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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
165.7
nTPM
HPA Brain:
86.6
nTPM
GTEx:
165.7
nTPM
FANTOM5:
163.3
Scaled Tags Per Million
MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
86.6
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 75.6
2019
Male, age 18, unknown
84.8
2666
Male, age 74, left hemisphere
84.2
2586
Male, age 75, left hemisphere
79.5
1827
Male, age 72, unknown
78.5
1870
Female, age 42, unknown
74.8
2411
Female, age 72, unknown
74.8
2828
Female, age 72, unknown
74.5
2219
Male, age 76, both hemispheres
70.0
1833
Male, age 53, unknown
69.6
1830
Male, age 51, unknown
65.0
Dorsal raphe nucleus nTPM: 76.4
2298
Female, age 72, unknown
82.1
2750
Male, age 76, both hemispheres
80.9
2047
Male, age 72, unknown
78.4
1828
Male, age 53, unknown
77.5
2016
Female, age 72, unknown
63.3
Inferior colliculus nTPM: 66.3
2097
Female, age 72, unknown
70.2
1890
Male, age 53, unknown
68.2
1848
Female, age 42, unknown
65.2
2849
Male, age 72, unknown
61.5
Median raphe nucleus nTPM: 79.8
2220
Male, age 76, midline
79.8
Periaquaductal grey, anterior nTPM: 76.8
1947
Male, age 18, unknown
77.9
2502
Female, age 75, unknown
77.0
1795
Male, age 51, unknown
75.4
Periaquaductal grey, dorsal nTPM: 65.8
1831
Male, age 72, unknown
67.3
2464
Female, age 72, unknown
67.1
1840
Male, age 53, unknown
64.5
2850
Male, age 76, both hemispheres
64.1
Periaquaductal grey, lateral nTPM: 63.3
2272
Male, age 74, both hemispheres
68.1
2053
Male, age 18, unknown
61.9
2140
Male, age 76, both hemispheres
59.8
Pretectal area nTPM: 78.9
1816
Male, age 51, unknown
95.2
1817
Female, age 42, unknown
95.2
2007
Male, age 72, unknown
92.0
1944
Female, age 72, unknown
90.0
1815
Male, age 53, unknown
83.9
2667
Female, age 75, unknown
77.2
2224
Female, age 72, unknown
73.4
2407
Male, age 75, both hemispheres
68.1
2273
Male, age 74, both hemispheres
66.7
2825
Male, age 18, unknown
66.0
2316
Male, age 76, right hemisphere
60.5
Red nucleus nTPM: 74.7
2785
Male, age 18, unknown
82.9
1821
Female, age 72, unknown
81.0
2725
Female, age 75, unknown
80.0
1954
Female, age 42, unknown
76.9
1865
Male, age 51, unknown
76.0
2769
Male, age 72, unknown
74.1
2227
Male, age 72, unknown
72.5
2584
Male, age 75, left hemisphere
72.5
1904
Male, age 53, unknown
72.4
2503
Female, age 72, unknown
71.5
2823
Male, age 76, right hemisphere
71.4
2588
Male, age 74, left hemisphere
64.8
Substantia nigra nTPM: 86.6
1916
Female, age 42, unknown
120.3
1851
Male, age 51, unknown
97.2
1941
Male, age 53, unknown
95.1
2665
Male, age 74, both hemispheres
87.7
1889
Female, age 72, unknown
86.8
2241
Male, age 72, unknown
80.2
2409
Female, age 72, unknown
78.5
2699
Male, age 18, unknown
77.3
2583
Male, age 75, right hemisphere
76.9
2590
Female, age 75, unknown
65.9
Superior colliculus nTPM: 73.0
2668
Female, age 75, unknown
88.5
2087
Female, age 72, unknown
81.1
2261
Male, age 18, unknown
76.3
1796
Male, age 53, unknown
73.9
1913
Female, age 42, unknown
73.2
2664
Male, age 75, both hemispheres
70.2
2587
Male, age 74, left hemisphere
69.3
1895
Male, age 76, right hemisphere
67.0
1995
Male, age 72, unknown
66.6
1839
Male, age 51, unknown
64.5
Ventral tegmental area nTPM: 78.4
1915
Female, age 42, unknown
89.6
2410
Female, age 72, unknown
82.3
2218
Male, age 76, both hemispheres
80.8
2223
Female, age 72, unknown
75.0
1942
Male, age 51, unknown
73.4
2021
Male, age 53, unknown
69.5
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
165.7
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 165.7
Samples: 139
Max nTPM: 316.3
Min nTPM: 96.3
Std nTPM: 31.6
Median nTPM: 161.7
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
316.3
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
273.5
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
265.4
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
235.5
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
228.6
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
223.0
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
214.0
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
212.5
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
211.0
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
209.3
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
208.7
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
207.7
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
206.8
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
206.6
GTEX-NL4W-0011-R2a-SM-2I5GV
50-59 years, male
203.0
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
201.8
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
199.7
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
197.9
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
196.6
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
196.5
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
195.0
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
194.1
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
192.4
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
191.7
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
190.9
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
190.7
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
189.6
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
189.3
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
187.3
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
184.3
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
183.9
GTEX-1IKOH-0011-R2a-SM-CMKHO
60-69 years, female
183.6
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
183.5
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
183.0
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
182.1
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
181.8
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
181.0
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
178.9
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
178.2
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
177.4
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
177.3
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
175.9
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
175.0
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
174.9
GTEX-P44G-0011-R2A-SM-2XCD2
30-39 years, male
174.8
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
174.3
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
174.2
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
173.8
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
173.6
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
172.8
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
172.6
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
172.2
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
171.1
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
170.5
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
170.2
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
169.9
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
169.9
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
168.3
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
167.9
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
167.8
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
167.3
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
166.5
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
166.0
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
165.6
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
165.5
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
164.0
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
163.1
GTEX-PWO3-0011-R2A-SM-2S1OX
60-69 years, female
163.1
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
162.0
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
161.7
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
160.9
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
160.1
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
159.0
GTEX-T5JC-0011-R2A-SM-32PLZ
20-29 years, male
158.9
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
158.1
GTEX-18464-0011-R2a-SM-731AL
50-59 years, male
156.8
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
156.5
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
156.2
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
155.9
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
155.8
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
154.9
GTEX-NPJ8-0011-R2a-SM-2TC6M
40-49 years, male
154.9
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
154.9
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
154.7
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
154.1
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
153.9
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
152.4
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
151.5
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
151.2
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
150.7
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
150.4
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
150.2
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
149.9
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
149.2
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
149.1
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
148.7
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
148.5
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
147.7
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
146.7
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
146.0
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
145.5
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
144.9
GTEX-N7MS-0011-R2a-SM-2HML6
60-69 years, male
144.5
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
144.4
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
144.3
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
144.1
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
144.0
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
143.2
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
141.4
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
141.3
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
140.8
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
140.1
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
139.8
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
139.8
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
139.2
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
138.4
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
138.3
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
137.7
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
137.3
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
136.1
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
136.0
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
135.7
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
135.3
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
133.4
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
133.3
GTEX-N7MT-0011-R2a-SM-2I3GI
60-69 years, female
133.2
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
132.7
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
132.3
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
130.1
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
129.8
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
128.2
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
126.9
GTEX-OXRO-0011-R2A-SM-3NB1W
60-69 years, female
123.3
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
121.4
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
118.9
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
115.6
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
111.0
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
107.7
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
96.3
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MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.