We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
h
m
l
n
Glial cells:
Not detected
Neuronal cells:
Not detected
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
174.5
nTPM
HPA Brain:
87.8
nTPM
GTEx:
174.5
nTPM
FANTOM5:
153.0
Scaled Tags Per Million
HIPPOCAMPUS - Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
Antibody HPA061298
Antibody CAB005042
Glial cells
Not detected
Not detected
Neuronal cells
Medium
Not detected
HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
87.8
Sample id
Sample description
nTPM
Hippocampus nTPM: 83.2
1898
Male, age 80, left hemisphere
99.1
2621
Female, age 67, right hemisphere
88.8
1855
Male, age 76, left hemisphere
84.5
2529
Female, age 94, left hemisphere
78.3
2148
Female, age 91, left hemisphere
75.2
1911
Female, age 85, right hemisphere
73.6
Dentate gyrus nTPM: 82.4
2530
Female, age 94, left hemisphere
105.8
1927
Female, age 91, both hemispheres
91.1
2010
Male, age 76, both hemispheres
86.9
2246
Female, age 85, both hemispheres
73.3
2528
Male, age 74, both hemispheres
70.1
2531
Female, age 67, both hemispheres
67.1
Entorhinal gyrus nTPM: 76.8
1938
Female, age 85, left hemisphere
88.6
2764
Male, age 80, right hemisphere
83.4
1787
Male, age 76, left hemisphere
76.0
2613
Female, age 94, left hemisphere
75.2
2117
Female, age 91, right hemisphere
70.5
2686
Male, age 75, right hemisphere
67.3
Hippocampus, CA1 nTPM: 87.8
2749
Male, age 80, left hemisphere
119.0
1873
Female, age 85, both hemispheres
88.3
2045
Male, age 76, both hemispheres
86.0
2527
Male, age 74, both hemispheres
76.1
2082
Female, age 91, right hemisphere
69.5
Hippocampus, CA2 nTPM: 83.0
1892
Male, age 76, both hemispheres
100.1
1963
Male, age 80, left hemisphere
96.2
2437
Female, age 94, left hemisphere
82.3
2249
Male, age 74, both hemispheres
79.5
1940
Female, age 85, left hemisphere
71.5
2113
Female, age 91, right hemisphere
68.5
Hippocampus, CA3 nTPM: 83.5
2137
Male, age 80, left hemisphere
95.7
1867
Male, age 76, both hemispheres
95.3
2861
Female, age 67, both hemispheres
80.6
2436
Male, age 74, both hemispheres
77.8
2620
Female, age 94, left hemisphere
77.8
1891
Female, age 85, both hemispheres
73.9
Parahippocampal cortex nTPM: 75.3
2250
Female, age 67, right hemisphere
83.8
1933
Female, age 85, both hemispheres
80.6
1850
Male, age 80, both hemispheres
80.1
2245
Female, age 91, both hemispheres
79.4
2532
Female, age 72, left hemisphere
76.1
2018
Male, age 76, both hemispheres
75.6
1990
Female, age 91, right hemisphere
75.4
2692
Male, age 74, both hemispheres
69.5
2622
Female, age 67, right hemisphere
69.0
2693
Female, age 94, both hemispheres
63.4
Perirhinal gyrus nTPM: 83.7
1847
Female, age 91, left hemisphere
99.2
1841
Female, age 85, right hemisphere
85.7
1794
Male, age 80, right hemisphere
82.8
2521
Female, age 94, right hemisphere
81.9
2848
Male, age 76, right hemisphere
68.8
Subiculum nTPM: 75.2
1901
Male, age 80, both hemispheres
80.6
2042
Male, age 76, both hemispheres
79.6
2438
Female, age 94, left hemisphere
78.2
1977
Female, age 85, both hemispheres
75.4
2619
Male, age 74, both hemispheres
73.9
2729
Female, age 91, right hemisphere
63.5
HIPPOCAMPAL FORMATION - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
174.5
GTEx sample id
Sample description
nTPM
Brain - Hippocampus Average nTPM: 174.5
Samples: 197
Max nTPM: 322.2
Min nTPM: 92.8
Std nTPM: 38.6
Median nTPM: 166.5
GTEX-144GL-0011-R1a-SM-5PNZ5
50-59 years, male
322.2
GTEX-13FXS-0011-R1a-SM-5K7U6
50-59 years, male
296.6
GTEX-14LLW-0011-R1a-SM-5ZZVD
70-79 years, female
292.0
GTEX-13O3Q-0011-R1b-SM-5KM3L
50-59 years, male
282.1
GTEX-139TT-0011-R1a-SM-5LZVD
60-69 years, male
280.6
GTEX-13O3O-0011-R1b-SM-5KM2K
60-69 years, female
262.4
GTEX-1IOXB-0011-R1a-SM-D4P27
50-59 years, male
262.3
GTEX-13112-0011-R1b-SM-5HL7K
50-59 years, male
252.4
GTEX-11TUW-0011-R1a-SM-DO92S
60-69 years, male
250.7
GTEX-N7MS-0011-R1a-SM-2HMJG
60-69 years, male
249.2
GTEX-X4EP-0011-R1A-SM-3P624
60-69 years, female
245.8
GTEX-14PN4-0011-R1b-SM-69LP8
50-59 years, male
244.0
GTEX-1B996-0011-R1b-SM-7P8PO
60-69 years, male
240.0
GTEX-1CB4J-0011-R1a-SM-9WG64
60-69 years, male
237.9
GTEX-1F75A-0011-R1b-SM-CE6RA
50-59 years, male
235.5
GTEX-1F6I4-0011-R1a-SM-9OSWU
60-69 years, male
234.0
GTEX-1B8SF-0011-R1b-SM-7P8Q8
60-69 years, male
229.1
GTEX-13JUV-0011-R1a-SM-5LZY4
40-49 years, female
227.4
GTEX-12WSM-0011-R1a-SM-5LZW6
60-69 years, male
223.3
GTEX-1GTWX-0011-R1a-SM-CE6RL
60-69 years, male
222.8
GTEX-1F48J-0011-R1a-SM-9QEIC
50-59 years, female
222.5
GTEX-17HHY-0011-R1a-SM-7189V
50-59 years, male
219.8
GTEX-17HG3-0011-R1a-SM-7LG6H
30-39 years, female
219.1
GTEX-14JIY-0011-R1a-SM-68713
60-69 years, male
219.0
GTEX-NL3H-0011-R1a-SM-48TDJ
60-69 years, male
217.7
GTEX-1CB4G-0011-R1b-SM-9QEHT
60-69 years, male
216.6
GTEX-13RTL-0011-R1a-SM-5PNZ8
40-49 years, male
213.7
GTEX-YFC4-0011-R1a-SM-4V6EH
40-49 years, female
213.6
GTEX-13FLW-0011-R1b-SM-5LZX2
50-59 years, male
213.0
GTEX-1A8G6-0011-R1a-SM-7P8PC
60-69 years, male
210.8
GTEX-1A3MX-0011-R1b-SM-7P8PH
60-69 years, male
210.6
GTEX-WHSE-0011-R1A-SM-3P5ZK
20-29 years, male
210.5
GTEX-P44G-0011-R1A-SM-2I3FE
30-39 years, male
210.4
GTEX-13NYB-0011-R1b-SM-5KM4F
40-49 years, male
208.8
GTEX-Y8DK-0011-R1A-SM-4RGLO
60-69 years, male
207.4
GTEX-1GF9W-0011-R1a-SM-9QEIQ
60-69 years, male
206.4
GTEX-1AX9I-0011-R1b-SM-7RHG2
60-69 years, male
205.9
GTEX-1J1OQ-0011-R1a-SM-A9G1Z
40-49 years, female
205.3
GTEX-11GS4-0011-R1a-SM-DO129
60-69 years, male
203.0
GTEX-1GMR8-0011-R1b-SM-CJI2O
50-59 years, female
201.6
GTEX-1I1GS-0011-R1a-SM-CJI43
60-69 years, male
201.6
GTEX-1EWIQ-0011-R1a-SM-9OSX7
70-79 years, female
199.0
GTEX-1EX96-0011-R1a-SM-CE6R5
50-59 years, male
198.6
GTEX-139T8-0011-R1a-SM-5HL75
60-69 years, male
198.5
GTEX-12WSE-0011-R1b-SM-5GU4V
20-29 years, male
198.3
GTEX-14E6D-0011-R1b-SM-5YYAW
50-59 years, male
198.0
GTEX-TSE9-0011-R1A-SM-3DB7E
60-69 years, female
197.0
GTEX-1399T-0011-R1b-SM-5DUWN
60-69 years, male
196.4
GTEX-1HSMO-0011-R1a-SM-CM2SV
60-69 years, male
196.1
GTEX-12WSD-0011-R1b-SM-5LZVY
60-69 years, female
195.9
GTEX-1H1ZS-0011-R1b-SM-A9G1E
70-79 years, male
193.7
GTEX-145LU-0011-R1a-SM-5Q5CE
50-59 years, male
193.3
GTEX-13FHP-0011-R1b-SM-5K7XL
50-59 years, male
192.4
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y
40-49 years, male
192.3
GTEX-14ASI-0011-R1b-SM-5S2TY
60-69 years, male
192.1
GTEX-11DXW-0011-R1a-SM-DNZZD
40-49 years, male
191.9
GTEX-13OW5-0011-R1b-SM-5L3GE
60-69 years, male
190.9
GTEX-15DCD-0011-R1b-SM-6LPIJ
70-79 years, female
190.2
GTEX-145MH-0011-R1b-SM-5PNWY
50-59 years, male
189.5
GTEX-13X6I-0011-R1b-SM-5PNZC
60-69 years, male
189.3
GTEX-13NYS-0011-R1b-SM-5MR55
60-69 years, male
188.8
GTEX-16XZZ-0011-R1a-SM-7LTAH
60-69 years, male
187.9
GTEX-16Z82-0011-R1b-SM-7EPHZ
60-69 years, male
187.6
GTEX-Q2AG-0011-R1A-SM-2HMJI
40-49 years, female
186.9
GTEX-1LG7Y-0011-R1a-SM-EYYWV
50-59 years, male
186.2
GTEX-13OVJ-0011-R1b-SM-5L3I6
50-59 years, female
185.3
GTEX-13N1W-0011-R1b-SM-5MR4T
70-79 years, male
185.1
GTEX-11EI6-0011-R1a-SM-DO93L
60-69 years, male
184.3
GTEX-1C6VR-0011-R1a-SM-7MXUE
60-69 years, male
184.2
GTEX-1H3VE-0011-R1a-SM-A9G1K
40-49 years, male
183.4
GTEX-13FTY-0011-R1a-SM-5LZXE
40-49 years, female
183.3
GTEX-1EMGI-0011-R1b-SM-9OSWZ
60-69 years, male
182.4
GTEX-1HT8W-0011-R1b-SM-CJI3V
30-39 years, male
182.2
GTEX-OHPN-0011-R1A-SM-2I5GB
60-69 years, female
180.4
GTEX-1C64N-0011-R1b-SM-7P8Q7
50-59 years, male
179.5
GTEX-1GN1U-0011-R1a-SM-CJI25
50-59 years, female
179.3
GTEX-15ER7-0011-R1b-SM-7KUE1
20-29 years, female
178.8
GTEX-17F97-0011-R1b-SM-7IGM9
50-59 years, male
178.7
GTEX-1GN73-0011-R1a-SM-CKZNT
60-69 years, male
178.7
GTEX-12WSH-0011-R1a-SM-5GU5V
50-59 years, male
177.9
GTEX-S7SE-0011-R1A-SM-2XCDE
50-59 years, male
177.8
GTEX-P44H-0011-R1A-SM-3NM8J
40-49 years, male
177.2
GTEX-14BIM-0011-R1a-SM-69LQI
60-69 years, female
177.0
GTEX-ZDXO-0011-R1a-SM-4WKF4
60-69 years, male
176.4
GTEX-13OW7-0011-R1b-SM-5L3HF
50-59 years, male
175.8
GTEX-14ABY-0011-R1a-SM-6EU2W
50-59 years, male
175.0
GTEX-17HII-0011-R1b-SM-7MGVW
50-59 years, male
174.3
GTEX-131XH-0011-R1a-SM-5DUWA
50-59 years, male
173.8
GTEX-13S7M-0011-R1b-SM-5PNZE
60-69 years, female
173.7
GTEX-ZE7O-0011-R1a-SM-57WDM
50-59 years, female
171.7
GTEX-NPJ7-0011-R1a-SM-3GACT
60-69 years, female
170.7
GTEX-131YS-0011-R1a-SM-5DUXC
60-69 years, female
170.2
GTEX-14C5O-0011-R1b-SM-6AJBW
60-69 years, male
169.8
GTEX-1HSKV-0011-R1b-SM-CMKH7
60-69 years, male
169.6
GTEX-1IY9M-0011-R1a-SM-EXURZ
60-69 years, male
168.5
GTEX-1LB8K-0011-R1b-SM-EZ6MV
50-59 years, male
168.4
GTEX-1H1DG-0011-R1b-SM-CKZP1
70-79 years, male
168.0
GTEX-18A6Q-0011-R1b-SM-731DI
60-69 years, male
167.9
GTEX-11GSP-0011-R1a-SM-9QEJ3
60-69 years, female
166.5
GTEX-11ONC-0011-R1a-SM-57WD4
60-69 years, male
166.2
GTEX-1IDJH-0011-R1b-SM-ARU6U
70-79 years, male
165.7
GTEX-13N2G-0011-R1b-SM-5MR3G
60-69 years, male
165.5
GTEX-1B933-0011-R1b-SM-9QEGW
50-59 years, female
165.5
GTEX-1EKGG-0011-R1b-SM-9QEI1
60-69 years, male
165.2
GTEX-1C6VQ-0011-R1a-SM-7P8Q2
50-59 years, male
165.1
GTEX-WVLH-0011-R1A-SM-4MVOK
50-59 years, male
164.6
GTEX-13SLW-0011-R1a-SM-5S2W7
70-79 years, male
164.4
GTEX-YJ89-0011-R1a-SM-4RGLS
60-69 years, male
164.3
GTEX-13CF2-0011-R1a-SM-5LZY1
60-69 years, male
163.7
GTEX-T5JC-0011-R1A-SM-32PM6
20-29 years, male
163.5
GTEX-N7MT-0011-R1a-SM-CNPO1
60-69 years, female
163.5
GTEX-12WSF-0011-R1a-SM-5DUVI
70-79 years, male
162.9
GTEX-ZF28-0011-R1a-SM-4WWD1
60-69 years, male
162.2
GTEX-12ZZX-0011-R1a-SM-5EQ6B
40-49 years, female
162.0
GTEX-1J8Q2-0011-R1a-SM-D4P2D
60-69 years, male
162.0
GTEX-1ICLZ-0011-R1b-SM-A9SM3
60-69 years, male
161.9
GTEX-X585-0011-R1B-SM-46MVE
50-59 years, male
161.4
GTEX-1GN2E-0011-R1b-SM-CE6RJ
60-69 years, male
160.8
GTEX-13PDP-0011-R1a-SM-5PNX5
60-69 years, male
160.6
GTEX-ZVZQ-0011-R1a-SM-57WBU
60-69 years, female
160.5
GTEX-1A32A-0011-R1a-SM-7P8SQ
50-59 years, female
160.5
GTEX-1H1CY-0011-R1a-SM-CKZOZ
60-69 years, female
160.0
GTEX-X4XX-0011-R1B-SM-3P622
60-69 years, male
158.8
GTEX-1EH9U-0011-R1b-SM-CJI2B
60-69 years, male
158.3
GTEX-1HR98-0011-R1a-SM-ARZLQ
60-69 years, male
157.8
GTEX-13OW6-0011-R1a-SM-5L3HQ
50-59 years, male
157.7
GTEX-WWYW-0011-R1A-SM-3TW8G
50-59 years, female
157.7
GTEX-RNOR-0011-R1A-SM-CNNP5
50-59 years, female
156.8
GTEX-1313W-0011-R1b-SM-5EQ4A
50-59 years, female
156.5
GTEX-15CHQ-0011-R1a-SM-COH27
60-69 years, male
155.7
GTEX-16YQH-0011-R1a-SM-7LT8R
30-39 years, male
155.3
GTEX-1IKK5-0011-R1b-SM-CE6SQ
60-69 years, male
154.9
GTEX-17JCI-0011-R1b-SM-718A3
60-69 years, female
154.5
GTEX-16NPV-0011-R1b-SM-7MGVZ
50-59 years, female
153.6
GTEX-1H23P-0011-R1a-SM-ACKVC
60-69 years, male
153.4
GTEX-1CAV2-0011-R1a-SM-ARZML
40-49 years, female
153.3
GTEX-R55E-0011-R1A-SM-2TC6N
20-29 years, male
152.9
GTEX-13FHO-0011-R1b-SM-5KLZG
60-69 years, male
152.7
GTEX-WL46-0011-R1A-SM-3LK6M
50-59 years, male
152.6
GTEX-1H4P4-0011-R1b-SM-CL54V
50-59 years, male
152.4
GTEX-1HBPI-0011-R1b-SM-A9SKF
50-59 years, male
152.1
GTEX-14PJM-0011-R1a-SM-CNPO3
50-59 years, female
151.7
GTEX-1E1VI-0011-R1a-SM-ARZMM
50-59 years, male
151.6
GTEX-1H3NZ-0011-R1a-SM-CKZP5
60-69 years, male
151.0
GTEX-1I1HK-0011-R1b-SM-CM2T7
60-69 years, male
150.5
GTEX-13JVG-0011-R1a-SM-5KM32
60-69 years, male
150.2
GTEX-PWO3-0011-R1A-SM-2I5EW
60-69 years, female
148.8
GTEX-WZTO-0011-R1B-SM-3NMAR
40-49 years, male
148.6
GTEX-1B8L1-0011-R1a-SM-7P8SS
60-69 years, male
148.4
GTEX-145LS-0011-R1b-SM-5PNUP
60-69 years, female
148.3
GTEX-17EVP-0011-R1a-SM-7DHLA
40-49 years, male
148.1
GTEX-11ZTS-0011-R1a-SM-5BC71
60-69 years, female
147.8
GTEX-QMR6-0011-R1A-SM-32PKW
50-59 years, male
147.7
GTEX-17MF6-0011-R1a-SM-72D6O
40-49 years, male
147.4
GTEX-14PQA-0011-R1b-SM-6EU1G
50-59 years, female
145.7
GTEX-1HGF4-0011-R1a-SM-CJI3S
60-69 years, male
145.7
GTEX-14PJO-0011-R1b-SM-6AJAK
60-69 years, male
145.1
GTEX-13QJC-0011-R1b-SM-5S2UU
60-69 years, female
145.0
GTEX-ZUA1-0011-R1a-SM-4YCE2
40-49 years, male
144.9
GTEX-1F75W-0011-R1a-SM-ARU81
60-69 years, male
144.8
GTEX-132Q8-0011-R1a-SM-5EGLK
60-69 years, male
144.4
GTEX-144GO-0011-R1a-SM-5PNWO
60-69 years, male
143.5
GTEX-11UD1-0011-R1b-SM-5BC7D
40-49 years, female
141.5
GTEX-PVOW-0011-R1A-SM-32PL6
40-49 years, male
141.3
GTEX-1GF9V-0011-R1a-SM-CKZNQ
60-69 years, male
141.1
GTEX-T6MN-0011-R1A-SM-32QOY
50-59 years, male
139.5
GTEX-13OVL-0011-R1a-SM-5L3H5
50-59 years, male
139.4
GTEX-1GZHY-0011-R1a-SM-CE6RR
50-59 years, female
139.4
GTEX-13G51-0011-R1a-SM-5LZYR
60-69 years, male
139.0
GTEX-ZAB4-0011-R1a-SM-4RGNO
40-49 years, male
137.6
GTEX-183WM-0011-R1a-SM-718A8
70-79 years, female
137.5
GTEX-1I1GQ-0011-R1a-SM-CY8GG
50-59 years, male
136.9
GTEX-13NZ8-0011-R1b-SM-5KM3V
60-69 years, female
135.2
GTEX-13QIC-0011-R1a-SM-5O9CJ
60-69 years, female
134.3
GTEX-QDT8-0011-R1A-SM-32PKS
30-39 years, female
132.4
GTEX-11ZVC-0011-R1b-SM-5BC6M
50-59 years, female
129.9
GTEX-13RTJ-0011-R1a-SM-5O9D9
60-69 years, male
129.7
GTEX-QVJO-0011-R1A-SM-2S1QI
60-69 years, female
129.2
GTEX-1E2YA-0011-R1b-SM-CJI29
50-59 years, male
127.1
GTEX-13OW8-0011-R1a-SM-5L3HI
60-69 years, male
125.7
GTEX-11WQC-0011-R1b-SM-DO932
60-69 years, male
124.5
GTEX-15UF6-0011-R1a-SM-9QEGH
70-79 years, female
124.4
GTEX-1BAJH-0011-R1a-SM-7P8SV
70-79 years, male
124.4
GTEX-1H3O1-0011-R1b-SM-CL554
60-69 years, male
124.2
GTEX-17EVQ-0011-R1a-SM-7189S
70-79 years, male
124.0
GTEX-13NZA-0011-R1b-SM-5LUAF
60-69 years, male
122.7
GTEX-16GPK-0011-R1b-SM-7EWDH
60-69 years, male
122.5
GTEX-11GSO-0011-R1b-SM-57WD3
60-69 years, male
122.2
GTEX-14LZ3-0011-R1a-SM-69LP5
60-69 years, female
122.1
GTEX-14E7W-0011-R1b-SM-5YYAT
70-79 years, male
121.1
GTEX-1212Z-0011-R1b-SM-5BC72
60-69 years, male
115.8
GTEX-1I1GV-0011-R1a-SM-CL559
60-69 years, male
114.9
GTEX-1F6IF-0011-R1b-SM-9WG78
60-69 years, male
112.4
GTEX-QVUS-0011-R1A-SM-3GAD2
60-69 years, female
109.5
GTEX-XMD1-0011-R1A-SM-4AT4C
60-69 years, male
107.2
GTEX-NPJ8-0011-R1a-SM-33HCB
40-49 years, male
96.0
GTEX-UTHO-0011-R1A-SM-3GIJO
60-69 years, male
92.8
Show allShow less
HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.