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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
155.1
nTPM
HPA Brain:
117.7
nTPM
GTEx:
155.1
nTPM
FANTOM5:
61.5
Scaled Tags Per Million
Pig:
173.2
nTPM
Mouse:
34.1
nTPM
Allen mouse:
0.1
Expression energy
MIDBRAIN - Annotated protein expression
Pending normal tissue analysis
MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
117.7
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 88.6
2828
Female, age 72, unknown
128.2
2586
Male, age 75, left hemisphere
124.5
1870
Female, age 42, unknown
103.2
1827
Male, age 72, unknown
88.9
2019
Male, age 18, unknown
85.7
1833
Male, age 53, unknown
77.6
2666
Male, age 74, left hemisphere
75.5
2411
Female, age 72, unknown
72.8
1830
Male, age 51, unknown
67.2
2219
Male, age 76, both hemispheres
62.3
Dorsal raphe nucleus nTPM: 108.6
2016
Female, age 72, unknown
128.0
1828
Male, age 53, unknown
119.0
2298
Female, age 72, unknown
117.2
2047
Male, age 72, unknown
108.4
2750
Male, age 76, both hemispheres
70.2
Inferior colliculus nTPM: 95.0
1848
Female, age 42, unknown
115.8
2849
Male, age 72, unknown
100.4
1890
Male, age 53, unknown
85.2
2097
Female, age 72, unknown
78.6
Median raphe nucleus nTPM: 73.6
2220
Male, age 76, midline
73.6
Periaquaductal grey, anterior nTPM: 113.6
1795
Male, age 51, unknown
142.4
2502
Female, age 75, unknown
118.2
1947
Male, age 18, unknown
80.3
Periaquaductal grey, dorsal nTPM: 105.8
1840
Male, age 53, unknown
129.0
2850
Male, age 76, both hemispheres
116.8
1831
Male, age 72, unknown
94.2
2464
Female, age 72, unknown
83.1
Periaquaductal grey, lateral nTPM: 117.7
2140
Male, age 76, both hemispheres
123.5
2053
Male, age 18, unknown
121.3
2272
Male, age 74, both hemispheres
108.3
Pretectal area nTPM: 108.8
2667
Female, age 75, unknown
127.9
2273
Male, age 74, both hemispheres
123.3
2316
Male, age 76, right hemisphere
119.0
2407
Male, age 75, both hemispheres
112.7
2224
Female, age 72, unknown
106.8
1816
Male, age 51, unknown
105.4
1944
Female, age 72, unknown
105.4
2825
Male, age 18, unknown
104.0
1817
Female, age 42, unknown
100.6
1815
Male, age 53, unknown
98.3
2007
Male, age 72, unknown
93.0
Red nucleus nTPM: 89.5
2503
Female, age 72, unknown
109.5
2769
Male, age 72, unknown
106.3
2227
Male, age 72, unknown
101.7
1821
Female, age 72, unknown
95.1
2785
Male, age 18, unknown
92.1
2725
Female, age 75, unknown
91.8
1954
Female, age 42, unknown
89.4
1904
Male, age 53, unknown
81.9
1865
Male, age 51, unknown
81.6
2823
Male, age 76, right hemisphere
78.1
2588
Male, age 74, left hemisphere
76.8
2584
Male, age 75, left hemisphere
69.2
Substantia nigra nTPM: 96.5
2699
Male, age 18, unknown
130.7
1916
Female, age 42, unknown
126.8
1851
Male, age 51, unknown
104.9
1889
Female, age 72, unknown
96.0
2583
Male, age 75, right hemisphere
92.9
2409
Female, age 72, unknown
91.3
2665
Male, age 74, both hemispheres
86.5
2590
Female, age 75, unknown
84.7
1941
Male, age 53, unknown
75.8
2241
Male, age 72, unknown
75.7
Superior colliculus nTPM: 105.9
2664
Male, age 75, both hemispheres
146.3
1796
Male, age 53, unknown
130.7
1995
Male, age 72, unknown
109.1
1913
Female, age 42, unknown
107.8
2261
Male, age 18, unknown
101.8
1839
Male, age 51, unknown
100.4
2587
Male, age 74, left hemisphere
99.5
2087
Female, age 72, unknown
97.7
2668
Female, age 75, unknown
89.4
1895
Male, age 76, right hemisphere
76.6
Ventral tegmental area nTPM: 94.9
1915
Female, age 42, unknown
108.6
2021
Male, age 53, unknown
99.5
1942
Male, age 51, unknown
98.7
2223
Female, age 72, unknown
96.2
2410
Female, age 72, unknown
88.1
2218
Male, age 76, both hemispheres
78.4
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
155.1
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 155.1
Samples: 139
Max nTPM: 415.6
Min nTPM: 43.9
Std nTPM: 70.2
Median nTPM: 143.7
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
415.6
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
402.8
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
391.8
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
308.0
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
304.0
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
303.2
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
300.7
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
295.2
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
282.4
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
262.1
GTEX-1IKOH-0011-R2a-SM-CMKHO
60-69 years, female
261.0
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
259.9
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
258.7
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
255.1
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
254.8
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
254.7
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
251.8
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
242.9
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
242.5
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
241.2
GTEX-OXRO-0011-R2A-SM-3NB1W
60-69 years, female
218.2
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
217.2
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
216.0
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
215.8
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
210.6
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
204.6
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
202.7
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
199.9
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
199.9
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
191.0
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
190.9
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
188.2
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
187.2
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
186.6
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
182.5
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
181.2
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
179.0
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
176.9
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
175.6
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
173.6
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
173.2
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
171.3
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
169.6
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
168.5
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
168.2
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
166.9
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
164.1
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
164.0
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
163.3
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
162.9
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
161.5
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
161.3
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
160.2
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
157.7
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
157.6
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
157.4
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
155.8
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
154.2
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
154.2
GTEX-NPJ8-0011-R2a-SM-2TC6M
40-49 years, male
153.8
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
152.8
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
151.9
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
151.9
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
151.8
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
150.9
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
148.3
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
148.0
GTEX-18464-0011-R2a-SM-731AL
50-59 years, male
146.1
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
145.0
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
143.7
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
141.9
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
140.2
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
139.7
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
138.8
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
138.8
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
138.5
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
138.3
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
138.1
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
135.9
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
135.5
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
133.4
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
129.3
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
129.2
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
127.3
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
127.1
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
126.9
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
126.5
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
126.1
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
124.8
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
121.7
GTEX-T5JC-0011-R2A-SM-32PLZ
20-29 years, male
120.5
GTEX-NL4W-0011-R2a-SM-2I5GV
50-59 years, male
119.7
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
119.5
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
117.5
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
115.7
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
114.7
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
114.6
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
113.7
GTEX-PWO3-0011-R2A-SM-2S1OX
60-69 years, female
113.0
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
112.0
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
111.5
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
111.4
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
110.9
GTEX-P44G-0011-R2A-SM-2XCD2
30-39 years, male
110.2
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
109.6
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
107.2
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
102.5
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
101.4
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
99.2
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
98.2
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
96.3
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
94.9
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
94.2
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
94.1
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
93.3
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
93.3
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
91.4
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
90.4
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
89.5
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
89.3
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
88.1
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
86.8
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
84.7
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
84.0
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
80.7
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
80.6
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
79.7
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
76.0
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
75.7
GTEX-N7MT-0011-R2a-SM-2I3GI
60-69 years, female
72.3
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
70.8
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
68.8
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
67.6
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
63.0
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
55.6
GTEX-N7MS-0011-R2a-SM-2HML6
60-69 years, male
51.8
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
48.6
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
48.6
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
43.9
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MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
34.1
Mouse sample
Sample description
nTPM
Midbrain nTPM: 34.1
Samples: 4
Max nTPM: 41.0
Min nTPM: 30.6
Sample A
Male
41.0
Sample B
Male
30.9
Sample C
Female
30.6
Sample D
Female
34.0
MIDBRAIN - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.