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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
80.8
nTPM
HPA Brain:
254.3
nTPM
GTEx:
80.8
nTPM
FANTOM5:
15.0
Scaled Tags Per Million
Pig:
226.0
nTPM
Mouse:
461.5
nTPM
Allen mouse:
9.4
Expression energy
MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
254.3
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 161.2
2586
Male, age 75, left hemisphere
310.1
1827
Male, age 72, unknown
191.2
2828
Female, age 72, unknown
177.9
1833
Male, age 53, unknown
173.1
2666
Male, age 74, left hemisphere
153.1
1870
Female, age 42, unknown
141.7
2219
Male, age 76, both hemispheres
127.5
2411
Female, age 72, unknown
122.8
1830
Male, age 51, unknown
120.8
2019
Male, age 18, unknown
93.4
Dorsal raphe nucleus nTPM: 181.5
1828
Male, age 53, unknown
242.2
2016
Female, age 72, unknown
224.7
2047
Male, age 72, unknown
203.2
2298
Female, age 72, unknown
151.6
2750
Male, age 76, both hemispheres
85.9
Inferior colliculus nTPM: 254.3
1848
Female, age 42, unknown
340.0
2849
Male, age 72, unknown
297.9
1890
Male, age 53, unknown
201.1
2097
Female, age 72, unknown
178.0
Median raphe nucleus nTPM: 68.3
2220
Male, age 76, midline
68.3
Periaquaductal grey, anterior nTPM: 185.0
2502
Female, age 75, unknown
206.8
1947
Male, age 18, unknown
177.7
1795
Male, age 51, unknown
170.6
Periaquaductal grey, dorsal nTPM: 194.3
1840
Male, age 53, unknown
291.8
2464
Female, age 72, unknown
226.1
2850
Male, age 76, both hemispheres
142.2
1831
Male, age 72, unknown
117.0
Periaquaductal grey, lateral nTPM: 157.1
2053
Male, age 18, unknown
197.8
2140
Male, age 76, both hemispheres
173.7
2272
Male, age 74, both hemispheres
99.8
Pretectal area nTPM: 179.5
1944
Female, age 72, unknown
225.0
1816
Male, age 51, unknown
224.0
1817
Female, age 42, unknown
214.1
2224
Female, age 72, unknown
212.6
2667
Female, age 75, unknown
208.6
2825
Male, age 18, unknown
207.4
1815
Male, age 53, unknown
154.2
2316
Male, age 76, right hemisphere
151.4
2007
Male, age 72, unknown
147.8
2273
Male, age 74, both hemispheres
117.1
2407
Male, age 75, both hemispheres
112.5
Red nucleus nTPM: 158.2
1821
Female, age 72, unknown
203.5
2769
Male, age 72, unknown
202.1
2227
Male, age 72, unknown
200.9
2588
Male, age 74, left hemisphere
200.2
2503
Female, age 72, unknown
194.8
1954
Female, age 42, unknown
187.4
1904
Male, age 53, unknown
147.8
2823
Male, age 76, right hemisphere
147.6
1865
Male, age 51, unknown
125.0
2725
Female, age 75, unknown
123.9
2785
Male, age 18, unknown
85.5
2584
Male, age 75, left hemisphere
80.1
Substantia nigra nTPM: 200.3
1916
Female, age 42, unknown
297.0
2699
Male, age 18, unknown
290.7
2665
Male, age 74, both hemispheres
237.6
1889
Female, age 72, unknown
201.9
2241
Male, age 72, unknown
196.4
1851
Male, age 51, unknown
193.3
2409
Female, age 72, unknown
184.6
2590
Female, age 75, unknown
155.4
2583
Male, age 75, right hemisphere
145.0
1941
Male, age 53, unknown
101.4
Superior colliculus nTPM: 167.9
2664
Male, age 75, both hemispheres
233.3
1839
Male, age 51, unknown
207.2
2261
Male, age 18, unknown
200.3
2087
Female, age 72, unknown
197.0
1796
Male, age 53, unknown
181.7
2668
Female, age 75, unknown
177.5
1895
Male, age 76, right hemisphere
162.5
2587
Male, age 74, left hemisphere
160.9
1995
Male, age 72, unknown
87.9
1913
Female, age 42, unknown
70.9
Ventral tegmental area nTPM: 129.1
2410
Female, age 72, unknown
192.9
1915
Female, age 42, unknown
186.1
1942
Male, age 51, unknown
116.9
2218
Male, age 76, both hemispheres
113.9
2021
Male, age 53, unknown
107.9
2223
Female, age 72, unknown
57.1
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
80.8
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 80.8
Samples: 139
Max nTPM: 389.2
Min nTPM: 1.4
Std nTPM: 69.8
Median nTPM: 60.9
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
389.2
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
305.2
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
285.4
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
281.4
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
257.1
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
247.8
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
227.7
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
215.7
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
214.2
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
204.2
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
188.0
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
185.3
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
182.6
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
177.3
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
175.2
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
171.9
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
168.6
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
167.4
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
154.9
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
154.3
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
148.3
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
141.2
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
132.6
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
131.5
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
128.7
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
119.9
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
117.9
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
117.6
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
115.8
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
115.6
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
115.4
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
115.1
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
114.4
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
113.3
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
113.1
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
111.7
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
106.4
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
106.2
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
105.7
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
103.8
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
103.7
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
102.9
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
99.1
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
97.5
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
94.8
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
94.4
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
94.3
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
92.4
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
90.1
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
88.7
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
88.6
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
88.6
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
87.7
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
87.0
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
87.0
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
81.5
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
76.9
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
71.1
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
68.6
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
68.1
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
68.0
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
67.5
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
67.0
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
67.0
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
63.3
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
63.2
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
62.2
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
61.9
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
61.1
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
60.9
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
59.7
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
59.0
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
58.5
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
57.9
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
57.4
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
56.6
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
56.5
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
54.0
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
53.6
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
53.2
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
50.3
GTEX-18464-0011-R2a-SM-731AL
50-59 years, male
49.9
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
49.3
GTEX-NL4W-0011-R2a-SM-2I5GV
50-59 years, male
48.9
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
48.1
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
47.7
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
47.6
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
47.2
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
45.6
GTEX-NPJ8-0011-R2a-SM-2TC6M
40-49 years, male
44.5
GTEX-T5JC-0011-R2A-SM-32PLZ
20-29 years, male
41.5
GTEX-PWO3-0011-R2A-SM-2S1OX
60-69 years, female
40.9
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
40.1
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
38.5
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
38.3
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
38.2
GTEX-P44G-0011-R2A-SM-2XCD2
30-39 years, male
37.5
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
36.3
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
36.2
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
36.2
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
34.9
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
34.3
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
34.2
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
34.2
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
31.9
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
31.9
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
31.7
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
30.6
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
27.3
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
26.2
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
25.2
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
23.2
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
22.9
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
22.6
GTEX-OXRO-0011-R2A-SM-3NB1W
60-69 years, female
21.9
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
20.8
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
17.9
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
17.5
GTEX-1IKOH-0011-R2a-SM-CMKHO
60-69 years, female
17.1
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
16.2
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
16.2
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
16.0
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
13.3
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
10.2
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
9.9
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
9.7
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
9.4
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
8.0
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
7.9
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
7.6
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
7.1
GTEX-N7MS-0011-R2a-SM-2HML6
60-69 years, male
7.1
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
5.4
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
5.1
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
4.6
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
4.6
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
4.6
GTEX-N7MT-0011-R2a-SM-2I3GI
60-69 years, female
4.5
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
1.4
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MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
461.5
Mouse sample
Sample description
nTPM
Midbrain nTPM: 461.5
Samples: 4
Max nTPM: 477.1
Min nTPM: 446.1
Sample A
Male
477.1
Sample B
Male
456.1
Sample C
Female
446.1
Sample D
Female
466.5
MIDBRAIN - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.