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A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
282.5
nTPM
Monaco:
1186.5
nTPM
Schmiedel:
807.9
TPM
T-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
282.5
HPA sample
nTPM
gdT-cell nTPM: 172.0
Samples: 6
Max nTPM: 268.4
Min nTPM: 82.7
P10809_1007
82.7
P10809_1022
268.4
P10809_1041
211.4
P10809_1060
180.1
P10809_1077
137.3
P10809_1098
151.9
MAIT T-cell nTPM: 185.1
Samples: 6
Max nTPM: 299.9
Min nTPM: 111.1
P10809_1006
111.1
P10809_1024
299.9
P10809_1043
193.8
P10809_1062
215.4
P10809_1083
117.0
P10809_1097
173.4
Memory CD4 T-cell nTPM: 245.2
Samples: 6
Max nTPM: 328.6
Min nTPM: 166.4
P10809_1014
166.4
P10809_1026
328.6
P10809_1045
284.4
P10809_1064
244.5
P10809_1086
204.9
P10809_1113
242.1
Memory CD8 T-cell nTPM: 214.9
Samples: 5
Max nTPM: 282.9
Min nTPM: 142.1
P10809_1012
142.1
P10809_1027
282.9
P10809_1046
198.6
P10809_1065
210.7
P10809_1111
240.3
Naive CD4 T-cell nTPM: 282.5
Samples: 6
Max nTPM: 399.4
Min nTPM: 150.2
P10809_1015
150.2
P10809_1030
319.6
P10809_1049
399.4
P10809_1068
283.6
P10809_1085
257.3
P10809_1112
284.8
Naive CD8 T-cell nTPM: 220.6
Samples: 6
Max nTPM: 271.6
Min nTPM: 153.2
P10809_1016
153.2
P10809_1031
271.6
P10809_1050
222.4
P10809_1069
265.2
P10809_1087
156.5
P10809_1110
254.5
T-reg nTPM: 271.6
Samples: 6
Max nTPM: 340.4
Min nTPM: 170.0
P10809_1018
170.0
P10809_1037
340.4
P10809_1056
338.4
P10809_1075
278.5
P10809_1094
267.7
P10809_1106
234.4
T-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
1186.5
Monaco sample
nTPM
Central memory CD8 T-cell nTPM: 1114.4
Samples: 4
Max nTPM: 1561.2
Min nTPM: 828.6
RHH5202_R3573
1561.2
RHH5230_R3602
1208.3
RHH5259_R3631
859.6
RHH5288_R3660
828.6
Effector memory CD8 T-cell nTPM: 906.7
Samples: 4
Max nTPM: 1290.5
Min nTPM: 716.2
RHH5203_R3574
1290.5
RHH5231_R3603
829.4
RHH5260_R3632
790.6
RHH5289_R3661
716.2
MAIT T-cell nTPM: 1074.9
Samples: 4
Max nTPM: 1902.7
Min nTPM: 648.0
RHH5233_R3605
917.6
RHH5205_R3576
1902.7
RHH5262_R3634
831.4
RHH5297_R3663
648.0
Memory CD4 T-cell TFH nTPM: 1134.2
Samples: 4
Max nTPM: 1585.4
Min nTPM: 755.9
RHH5300_R3666
755.9
RHH5236_R3608
1356.7
RHH5265_R3637
838.6
RHH5208_R3579
1585.4
Memory CD4 T-cell Th1 nTPM: 933.6
Samples: 4
Max nTPM: 1298.5
Min nTPM: 790.5
RHH5210_R3581
1298.5
RHH5302_R3668
790.5
RHH5238_R3610
826.4
RHH5267_R3639
818.9
Memory CD4 T-cell Th1/Th17 nTPM: 1186.6
Samples: 4
Max nTPM: 1822.1
Min nTPM: 858.7
RHH5303_R3669
1073.1
RHH5211_R3582
1822.1
RHH5239_R3611
992.3
RHH5268_R3640
858.7
Memory CD4 T-cell Th17 nTPM: 1062.1
Samples: 4
Max nTPM: 1478.9
Min nTPM: 732.7
RHH5304_R3670
878.5
RHH5212_R3583
1478.9
RHH5240_R3612
1158.3
RHH5269_R3641
732.7
Memory CD4 T-cell Th2 nTPM: 895.8
Samples: 4
Max nTPM: 1297.3
Min nTPM: 649.0
RHH5305_R3671
649.0
RHH5213_R3584
1297.3
RHH5241_R3613
975.9
RHH5270_R3642
661.0
Naive CD4 T-cell nTPM: 962.6
Samples: 4
Max nTPM: 1378.8
Min nTPM: 761.9
RHH5306_R3672
804.3
RHH5214_R3585
1378.8
RHH5242_R3614
905.4
RHH5271_R3643
761.9
Naive CD8 T-cell nTPM: 1077.8
Samples: 4
Max nTPM: 1422.0
Min nTPM: 913.6
RHH5201_R3572
1422.0
RHH5229_R3601
1015.2
RHH5258_R3630
913.6
RHH5287_R3659
960.2
Non-Vd2 gdTCR nTPM: 624.4
Samples: 4
Max nTPM: 756.6
Min nTPM: 404.2
RHH5235_R3607
756.6
RHH5264_R3636
652.6
RHH5207_R3578
684.2
RHH5299_R3665
404.2
T-reg nTPM: 1051.9
Samples: 4
Max nTPM: 1492.1
Min nTPM: 753.0
RHH5301_R3667
753.0
RHH5237_R3609
1155.1
RHH5266_R3638
807.3
RHH5209_R3580
1492.1
Terminal effector memory CD4 T-cell nTPM: 510.4
Samples: 2
Max nTPM: 600.0
Min nTPM: 420.7
RHH5243_R3615
420.7
RHH5272_R3644
600.0
Terminal effector memory CD8 T-cell nTPM: 609.3
Samples: 4
Max nTPM: 814.1
Min nTPM: 474.5
RHH5232_R3604
614.2
RHH5204_R3575
814.1
RHH5261_R3633
534.2
RHH5296_R3662
474.5
Vd2 gdTCR nTPM: 707.7
Samples: 4
Max nTPM: 830.7
Min nTPM: 512.1
RHH5234_R3606
724.5
RHH5206_R3577
830.7
RHH5263_R3635
763.5
RHH5298_R3664
512.1
T-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
The Human Protein Atlas project is funded
