We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
235.2
Sample id
Sample description
nTPM
Amygdala nTPM: 235.2
2695
Female, age 67, right hemisphere
420.3
2814
Male, age 76, right hemisphere
252.7
1987
Female, age 91, left hemisphere
175.3
2514
Male, age 75, right hemisphere
166.7
2517
Female, age 94, left hemisphere
161.2
Basal amygdala nTPM: 190.2
2609
Male, age 75, right hemisphere
314.9
2243
Female, age 91, right hemisphere
232.5
1955
Male, age 76, both hemispheres
170.3
2110
Male, age 80, left hemisphere
165.8
2685
Female, age 94, left hemisphere
149.3
2827
Female, age 67, right hemisphere
108.7
Central amygdala nTPM: 187.3
1905
Male, age 76, both hemispheres
246.0
2515
Male, age 75, right hemisphere
214.9
2826
Female, age 94, left hemisphere
174.1
2239
Male, age 80, left hemisphere
150.7
2701
Female, age 91, right hemisphere
150.7
Corticomedial amygdala nTPM: 196.3
2829
Male, age 80, left hemisphere
318.3
2428
Male, age 75, right hemisphere
220.8
2242
Female, age 91, right hemisphere
198.9
2240
Male, age 76, both hemispheres
162.5
2535
Female, age 67, right hemisphere
138.7
2429
Female, age 94, left hemisphere
138.6
Lateral amygdala nTPM: 176.2
2516
Male, age 75, right hemisphere
250.0
1883
Male, age 76, both hemispheres
197.5
2256
Male, age 80, left hemisphere
195.8
2255
Female, age 91, right hemisphere
170.6
2534
Female, age 94, left hemisphere
142.4
2830
Female, age 67, right hemisphere
100.8
AMYGDALA - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
231.4
GTEx sample id
Sample description
nTPM
Brain - Amygdala Average nTPM: 231.4
Samples: 152
Max nTPM: 691.9
Min nTPM: 8.5
Std nTPM: 98.0
Median nTPM: 218.1
GTEX-1J8Q2-0011-R4a-SM-ADEHA
60-69 years, male
691.9
GTEX-12ZZW-0011-R4a-SM-5DUX9
50-59 years, male
652.6
GTEX-1F75A-0011-R4a-SM-ARL8J
50-59 years, male
459.6
GTEX-13CZV-0011-R4b-SM-5J2NY
60-69 years, male
446.7
GTEX-1JMQJ-0011-R4b-SM-EXUT8
50-59 years, male
445.4
GTEX-11ZU8-0011-R4a-SM-5BC6Y
60-69 years, male
416.9
GTEX-14JFF-0011-R4a-SM-5ZZV5
60-69 years, male
394.9
GTEX-14JG1-0011-R4b-SM-62LEB
40-49 years, male
394.8
GTEX-12WSA-0011-R4a-SM-57WB7
60-69 years, male
379.9
GTEX-17HG3-0011-R4a-SM-7IGLL
30-39 years, female
377.5
GTEX-13OW8-0011-R4a-SM-9WG6V
60-69 years, male
375.8
GTEX-1J1OQ-0011-R4a-SM-D4P2A
40-49 years, female
374.9
GTEX-1F6IF-0011-R4b-SM-CKZNJ
60-69 years, male
368.5
GTEX-1GTWX-0011-R4a-SM-C1YQI
60-69 years, male
356.2
GTEX-13NYB-0011-R4b-SM-9QEGJ
40-49 years, male
355.5
GTEX-1H3O1-0011-R4b-SM-A9SKE
60-69 years, male
351.3
GTEX-13OVJ-0011-R4b-SM-5P9H5
50-59 years, female
350.8
GTEX-1H23P-0011-R4b-SM-CL54R
60-69 years, male
348.9
GTEX-1C6WA-0011-R4a-SM-9QEH2
60-69 years, male
348.2
GTEX-13FLV-0011-R4a-SM-5LZYU
50-59 years, male
342.2
GTEX-1J8EW-0011-R4b-SM-ARU89
60-69 years, female
338.6
GTEX-13SLX-0011-R4a-SM-5O9BJ
50-59 years, female
335.4
GTEX-1C6VR-0011-R4b-SM-9QEGZ
60-69 years, male
323.8
GTEX-NL3H-0011-R4a-SM-2I3GK
60-69 years, male
318.6
GTEX-14JIY-0011-R4b-SM-5ZZV7
60-69 years, male
306.3
GTEX-15SHU-0011-R4b-SM-7IGLC
40-49 years, female
305.0
GTEX-1HBPI-0011-R4a-SM-CJI3K
50-59 years, male
303.3
GTEX-QVUS-0011-R4A-SM-3GAE7
60-69 years, female
301.6
GTEX-11TTK-0011-R4a-SM-DNZZU
60-69 years, female
297.0
GTEX-11ONC-0011-R4b-SM-DO93H
60-69 years, male
292.9
GTEX-16YQH-0011-R4a-SM-7EPGI
30-39 years, male
290.0
GTEX-13OW7-0011-R4b-SM-5O9CX
50-59 years, male
289.3
GTEX-1GMR8-0011-R4a-SM-9OSX1
50-59 years, female
287.2
GTEX-13RTJ-0011-R4b-SM-5PNX1
60-69 years, male
283.6
GTEX-1H1ZS-0011-R4b-SM-CKZO7
70-79 years, male
281.8
GTEX-P44G-0011-R4A-SM-2I3FB
30-39 years, male
279.1
GTEX-12WSD-0011-R4b-SM-5LZUA
60-69 years, female
278.6
GTEX-17EVP-0011-R4a-SM-79OML
40-49 years, male
278.2
GTEX-13X6J-0011-R4b-SM-5P9K4
50-59 years, male
275.3
GTEX-13OVH-0011-R4a-SM-5KM3W
70-79 years, male
274.9
GTEX-15DCD-0011-R4a-SM-69LPB
70-79 years, female
273.0
GTEX-13QIC-0011-R4a-SM-5PNX8
60-69 years, female
271.8
GTEX-13O3Q-0011-R4a-SM-5P9H2
50-59 years, male
265.8
GTEX-1LSVX-0011-R4b-SM-EXURP
60-69 years, male
265.6
GTEX-TSE9-0011-R4A-SM-3DB7H
60-69 years, female
265.5
GTEX-1LVAO-0011-R4a-SM-EXURO
60-69 years, male
259.6
GTEX-15EO6-0011-R4a-SM-7KUKZ
50-59 years, male
258.6
GTEX-1F7RK-0011-R4b-SM-9QEI7
20-29 years, female
257.8
GTEX-1ICLZ-0011-R4a-SM-CMKHL
60-69 years, male
257.3
GTEX-14PQA-0011-R4b-SM-6AJBU
50-59 years, female
255.2
GTEX-13O3O-0011-R4b-SM-5KM3F
60-69 years, female
251.8
GTEX-1HB9E-0011-R4b-SM-ARZLS
50-59 years, male
250.4
GTEX-ZAB4-0011-R4a-SM-4SOKB
40-49 years, male
249.0
GTEX-13VXU-0011-R4b-SM-5O9CI
50-59 years, male
248.3
GTEX-1A3MX-0011-R4b-SM-7EWFK
60-69 years, male
248.2
GTEX-1HFI6-0011-R4b-SM-A96RT
40-49 years, male
243.6
GTEX-15CHQ-0011-R4a-SM-686ZX
60-69 years, male
242.4
GTEX-14E7W-0011-R4b-SM-62LEA
70-79 years, male
241.8
GTEX-13JVG-0011-R4a-SM-5MR4C
60-69 years, male
240.5
GTEX-P44H-0011-R4A-SM-2XCEW
40-49 years, male
236.5
GTEX-1EX96-0011-R4a-SM-ARU82
50-59 years, male
236.1
GTEX-15ER7-0011-R4a-SM-6M46S
20-29 years, female
235.1
GTEX-11ZVC-0011-R4a-SM-5BC6Z
50-59 years, female
232.3
GTEX-1GN73-0011-R4b-SM-9QEIK
60-69 years, male
232.2
GTEX-14BIM-0011-R4b-SM-5S2RK
60-69 years, female
231.6
GTEX-WVLH-0011-R4A-SM-3MJFS
50-59 years, male
231.2
GTEX-131YS-0011-R4a-SM-5DUVL
60-69 years, female
230.1
GTEX-13OVL-0011-R4b-SM-5L3HV
50-59 years, male
226.8
GTEX-147GR-0011-R4a-SM-5S2V2
60-69 years, male
224.3
GTEX-145LS-0011-R4b-SM-5S2UT
60-69 years, female
224.1
GTEX-14PN4-0011-R4a-SM-686ZT
50-59 years, male
222.7
GTEX-17F97-0011-R4b-SM-7KFS2
50-59 years, male
222.1
GTEX-13N1W-0011-R4a-SM-5MR52
70-79 years, male
220.4
GTEX-ZAK1-0011-R4a-SM-6AJBK
50-59 years, female
219.0
GTEX-13SLW-0011-R4b-SM-5S2W2
70-79 years, male
218.9
GTEX-1EMGI-0011-R4b-SM-CJI2D
60-69 years, male
218.7
GTEX-RNOR-0011-R4A-SM-3GAD3
50-59 years, female
217.5
GTEX-1I1GR-0011-R4a-SM-CMKHC
60-69 years, male
217.5
GTEX-1H1CY-0011-R4b-SM-CJI3G
60-69 years, female
216.6
GTEX-ZVZQ-0011-R4b-SM-57WCZ
60-69 years, female
215.5
GTEX-1B8L1-0011-R4a-SM-7EWFJ
60-69 years, male
215.2
GTEX-T5JC-0011-R4A-SM-32PLT
20-29 years, male
215.1
GTEX-QVJO-0011-R4A-SM-2S1QL
60-69 years, female
210.5
GTEX-R55E-0011-R4A-SM-2TC5H
20-29 years, male
210.1
GTEX-14ABY-0011-R4b-SM-5S2VN
50-59 years, male
208.4
GTEX-1CB4G-0011-R4b-SM-CJI28
60-69 years, male
207.8
GTEX-1313W-0011-R4b-SM-5KLZV
50-59 years, female
204.7
GTEX-Y8DK-0011-R4A-SM-EXUR1
60-69 years, male
202.8
GTEX-1N2EE-0011-R4a-SM-EXOII
60-69 years, male
202.6
GTEX-NPJ8-0011-R4a-SM-2HML3
40-49 years, male
202.1
GTEX-Q2AG-0011-R4A-SM-2HMKA
40-49 years, female
202.1
GTEX-11NUK-0011-R4a-SM-DO12B
50-59 years, male
201.2
GTEX-S7SE-0011-R4A-SM-2XCDB
50-59 years, male
199.7
GTEX-ZE9C-0011-R4a-SM-4WKH6
60-69 years, male
199.4
GTEX-1IY9M-0011-R4a-SM-C1YQ2
60-69 years, male
199.3
GTEX-1399T-0011-R4b-SM-5DUVX
60-69 years, male
199.1
GTEX-145MI-0011-R4b-SM-5PNZH
60-69 years, female
196.4
GTEX-N7MT-0011-R4a-SM-2I3G9
60-69 years, female
195.6
GTEX-13OW6-0011-R4a-SM-5O9DX
50-59 years, male
194.8
GTEX-12WSH-0011-R4a-SM-5GU6K
50-59 years, male
194.6
GTEX-QMR6-0011-R4A-SM-32PKU
50-59 years, male
194.2
GTEX-11PRG-0011-R4a-SM-DNZZR
50-59 years, male
194.2
GTEX-1GF9W-0011-R4a-SM-CE6RH
60-69 years, male
192.9
GTEX-1JJEA-0011-R4a-SM-EXUTC
60-69 years, male
191.4
GTEX-1H1DG-0011-R4a-SM-CE6RQ
70-79 years, male
188.8
GTEX-13NYS-0011-R4b-SM-5MR3O
60-69 years, male
185.4
GTEX-YFC4-0011-R4a-SM-4RGLQ
40-49 years, female
184.6
GTEX-XLM4-0011-R4B-SM-4AT5C
60-69 years, male
183.9
GTEX-1HBPH-0011-R4a-SM-A96RX
40-49 years, female
183.9
GTEX-1GZ4I-0011-R4a-SM-9QEI9
50-59 years, male
182.0
GTEX-131XH-0011-R4b-SM-5DUWB
50-59 years, male
181.8
GTEX-NPJ7-0011-R4a-SM-2I3GJ
60-69 years, female
177.4
GTEX-15DYW-0011-R4a-SM-6M46V
60-69 years, female
175.2
GTEX-14PJM-0011-R4a-SM-5YYAS
50-59 years, female
173.5
GTEX-1AX9I-0011-R4b-SM-7EPIB
60-69 years, male
172.6
GTEX-T6MN-0011-R4A-SM-32QPG
50-59 years, male
170.0
GTEX-1F48J-0011-R4b-SM-9OSVX
50-59 years, female
166.4
GTEX-14ASI-0011-R4a-SM-69LQ4
60-69 years, male
165.2
GTEX-13X6K-0011-R4b-SM-5P9HO
60-69 years, female
164.7
GTEX-1JN6P-0011-R4a-SM-EZ6MS
60-69 years, male
159.5
GTEX-1E1VI-0011-R4b-SM-9QEHV
50-59 years, male
158.4
GTEX-12WSF-0011-R4b-SM-5HL88
70-79 years, male
158.0
GTEX-QDT8-0011-R4A-SM-32PKM
30-39 years, female
156.0
GTEX-1H3NZ-0011-R4a-SM-CL54T
60-69 years, male
154.7
GTEX-WHSE-0011-R4A-SM-3P5ZN
20-29 years, male
154.1
GTEX-13OW5-0011-R4b-SM-5L3HS
60-69 years, male
151.7
GTEX-13X6I-0011-R4b-SM-5PNU9
60-69 years, male
150.3
GTEX-NL4W-0011-R4a-SM-2I5GZ
50-59 years, male
148.9
GTEX-WZTO-0011-R4A-SM-3NMC7
40-49 years, male
148.0
GTEX-12ZZZ-0011-R4b-SM-5DUV7
60-69 years, male
143.2
GTEX-13112-0011-R4b-SM-5DUXL
50-59 years, male
142.4
GTEX-1CB4J-0011-R4b-SM-9WG5P
60-69 years, male
140.2
GTEX-1445S-0011-R4a-SM-5PNWN
60-69 years, male
138.0
GTEX-1N2DW-0011-R4b-SM-EZ6MD
50-59 years, male
132.9
GTEX-X585-0011-R4B-SM-46MVH
50-59 years, male
132.8
GTEX-1B996-0011-R4b-SM-9OSVO
60-69 years, male
129.9
GTEX-13N2G-0011-R4b-SM-5MR54
60-69 years, male
127.6
GTEX-14DAQ-0011-R4a-SM-5YYAI
60-69 years, female
127.1
GTEX-139T8-0011-R4a-SM-5HL54
60-69 years, male
125.5
GTEX-N7MS-0011-R4a-SM-2HMKW
60-69 years, male
115.8
GTEX-13PVQ-0011-R4a-SM-5O9CT
50-59 years, male
110.3
GTEX-17EVQ-0011-R4b-SM-7LT94
70-79 years, male
100.9
GTEX-18464-0011-R4a-SM-7LG6T
50-59 years, male
100.4
GTEX-1HCU6-0011-R4b-SM-ARU74
60-69 years, female
98.4
GTEX-UTHO-0011-R4A-SM-3GIJP
60-69 years, male
92.8
GTEX-X4XX-0011-R4B-SM-46MWL
60-69 years, male
92.2
GTEX-1H2FU-0011-R4a-SM-CL551
60-69 years, female
91.9
GTEX-144GL-0011-R4a-SM-5PNUI
50-59 years, male
91.5
GTEX-OHPN-0011-R4A-SM-2I5FD
60-69 years, female
76.3
GTEX-183WM-0011-R4a-SM-7LG6S
70-79 years, female
51.8
GTEX-15DDE-0011-R4b-SM-7KULI
50-59 years, female
28.7
GTEX-X4EP-0011-R4B-SM-3P627
60-69 years, female
8.5
Show allShow less
AMYGDALA - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
156.2
Mouse sample
Sample description
nTPM
Amygdala nTPM: 156.2
Samples: 4
Max nTPM: 211.0
Min nTPM: 100.8
Sample A
Male
100.8
Sample B
Male
155.3
Sample C
Female
211.0
Sample D
Female
157.6
AMYGDALA - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.