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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
h
m
l
n
Glial cells:
High
Neuronal cells:
High
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
31.2
nTPM
HPA Brain:
45.8
nTPM
GTEx:
31.2
nTPM
FANTOM5:
46.5
Scaled Tags Per Million
Pig:
82.2
nTPM
Mouse:
74.0
nTPM
Allen mouse:
7.9
Expression energy
HIPPOCAMPUS - Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
Antibody HPA012510
Antibody CAB008388
Glial cells
Not detected
High
Neuronal cells
Medium
High
HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
45.8
Sample id
Sample description
nTPM
Hippocampus nTPM: 42.0
1898
Male, age 80, left hemisphere
48.9
1855
Male, age 76, left hemisphere
43.8
2621
Female, age 67, right hemisphere
43.3
2148
Female, age 91, left hemisphere
42.0
1911
Female, age 85, right hemisphere
38.3
2529
Female, age 94, left hemisphere
35.5
Dentate gyrus nTPM: 39.6
2010
Male, age 76, both hemispheres
43.9
1927
Female, age 91, both hemispheres
42.7
2246
Female, age 85, both hemispheres
39.2
2528
Male, age 74, both hemispheres
39.2
2531
Female, age 67, both hemispheres
36.6
2530
Female, age 94, left hemisphere
35.9
Entorhinal gyrus nTPM: 39.7
1938
Female, age 85, left hemisphere
42.6
2764
Male, age 80, right hemisphere
42.1
2686
Male, age 75, right hemisphere
39.3
2117
Female, age 91, right hemisphere
39.0
1787
Male, age 76, left hemisphere
38.2
2613
Female, age 94, left hemisphere
36.9
Hippocampus, CA1 nTPM: 43.6
2749
Male, age 80, left hemisphere
58.1
2045
Male, age 76, both hemispheres
42.3
1873
Female, age 85, both hemispheres
41.2
2527
Male, age 74, both hemispheres
40.4
2082
Female, age 91, right hemisphere
36.2
Hippocampus, CA2 nTPM: 41.0
1963
Male, age 80, left hemisphere
47.0
1892
Male, age 76, both hemispheres
46.1
2249
Male, age 74, both hemispheres
39.8
1940
Female, age 85, left hemisphere
38.2
2113
Female, age 91, right hemisphere
38.1
2437
Female, age 94, left hemisphere
36.8
Hippocampus, CA3 nTPM: 43.8
2137
Male, age 80, left hemisphere
49.8
2620
Female, age 94, left hemisphere
47.6
1867
Male, age 76, both hemispheres
46.9
2436
Male, age 74, both hemispheres
40.8
1891
Female, age 85, both hemispheres
39.2
2861
Female, age 67, both hemispheres
38.5
Parahippocampal cortex nTPM: 41.4
1850
Male, age 80, both hemispheres
46.5
1933
Female, age 85, both hemispheres
46.0
2250
Female, age 67, right hemisphere
44.3
2245
Female, age 91, both hemispheres
43.2
2532
Female, age 72, left hemisphere
40.8
2693
Female, age 94, both hemispheres
39.7
2622
Female, age 67, right hemisphere
39.4
1990
Female, age 91, right hemisphere
39.3
2692
Male, age 74, both hemispheres
38.9
2018
Male, age 76, both hemispheres
35.4
Perirhinal gyrus nTPM: 45.8
1847
Female, age 91, left hemisphere
50.8
1841
Female, age 85, right hemisphere
49.6
1794
Male, age 80, right hemisphere
48.0
2521
Female, age 94, right hemisphere
42.1
2848
Male, age 76, right hemisphere
38.7
Subiculum nTPM: 40.1
1977
Female, age 85, both hemispheres
42.2
1901
Male, age 80, both hemispheres
41.3
2619
Male, age 74, both hemispheres
40.4
2438
Female, age 94, left hemisphere
39.3
2729
Female, age 91, right hemisphere
38.9
2042
Male, age 76, both hemispheres
38.4
HIPPOCAMPAL FORMATION - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
31.2
GTEx sample id
Sample description
nTPM
Brain - Hippocampus Average nTPM: 31.2
Samples: 197
Max nTPM: 50.4
Min nTPM: 20.7
Std nTPM: 5.5
Median nTPM: 30.6
GTEX-RNOR-0011-R1A-SM-CNNP5
50-59 years, female
50.4
GTEX-1HT8W-0011-R1b-SM-CJI3V
30-39 years, male
50.0
GTEX-145MH-0011-R1b-SM-5PNWY
50-59 years, male
48.7
GTEX-14LLW-0011-R1a-SM-5ZZVD
70-79 years, female
43.2
GTEX-16YQH-0011-R1a-SM-7LT8R
30-39 years, male
41.7
GTEX-WL46-0011-R1A-SM-3LK6M
50-59 years, male
41.3
GTEX-13NYB-0011-R1b-SM-5KM4F
40-49 years, male
41.1
GTEX-R55E-0011-R1A-SM-2TC6N
20-29 years, male
41.1
GTEX-14ABY-0011-R1a-SM-6EU2W
50-59 years, male
40.5
GTEX-Q2AG-0011-R1A-SM-2HMJI
40-49 years, female
40.1
GTEX-P44G-0011-R1A-SM-2I3FE
30-39 years, male
39.9
GTEX-1GMR8-0011-R1b-SM-CJI2O
50-59 years, female
39.8
GTEX-1IDJH-0011-R1b-SM-ARU6U
70-79 years, male
39.4
GTEX-1313W-0011-R1b-SM-5EQ4A
50-59 years, female
39.3
GTEX-13NYS-0011-R1b-SM-5MR55
60-69 years, male
39.3
GTEX-12WSF-0011-R1a-SM-5DUVI
70-79 years, male
39.1
GTEX-1IY9M-0011-R1a-SM-EXURZ
60-69 years, male
39.0
GTEX-YFC4-0011-R1a-SM-4V6EH
40-49 years, female
38.6
GTEX-14PN4-0011-R1b-SM-69LP8
50-59 years, male
38.5
GTEX-13FLW-0011-R1b-SM-5LZX2
50-59 years, male
38.0
GTEX-WHSE-0011-R1A-SM-3P5ZK
20-29 years, male
38.0
GTEX-131XH-0011-R1a-SM-5DUWA
50-59 years, male
37.9
GTEX-1EMGI-0011-R1b-SM-9OSWZ
60-69 years, male
37.9
GTEX-1CB4J-0011-R1a-SM-9WG64
60-69 years, male
37.6
GTEX-12ZZX-0011-R1a-SM-5EQ6B
40-49 years, female
37.5
GTEX-X4EP-0011-R1A-SM-3P624
60-69 years, female
37.5
GTEX-1HGF4-0011-R1a-SM-CJI3S
60-69 years, male
37.4
GTEX-1HSKV-0011-R1b-SM-CMKH7
60-69 years, male
37.4
GTEX-1F75A-0011-R1b-SM-CE6RA
50-59 years, male
37.1
GTEX-131YS-0011-R1a-SM-5DUXC
60-69 years, female
36.6
GTEX-1ICLZ-0011-R1b-SM-A9SM3
60-69 years, male
36.6
GTEX-144GL-0011-R1a-SM-5PNZ5
50-59 years, male
36.5
GTEX-139TT-0011-R1a-SM-5LZVD
60-69 years, male
36.4
GTEX-13JUV-0011-R1a-SM-5LZY4
40-49 years, female
36.4
GTEX-17HG3-0011-R1a-SM-7LG6H
30-39 years, female
36.2
GTEX-11ZTS-0011-R1a-SM-5BC71
60-69 years, female
36.0
GTEX-ZDXO-0011-R1a-SM-4WKF4
60-69 years, male
35.9
GTEX-11EI6-0011-R1a-SM-DO93L
60-69 years, male
35.9
GTEX-1F75W-0011-R1a-SM-ARU81
60-69 years, male
35.9
GTEX-13O3O-0011-R1b-SM-5KM2K
60-69 years, female
35.8
GTEX-1A3MX-0011-R1b-SM-7P8PH
60-69 years, male
35.8
GTEX-1LG7Y-0011-R1a-SM-EYYWV
50-59 years, male
35.7
GTEX-13OVJ-0011-R1b-SM-5L3I6
50-59 years, female
35.6
GTEX-WWYW-0011-R1A-SM-3TW8G
50-59 years, female
35.6
GTEX-X585-0011-R1B-SM-46MVE
50-59 years, male
35.6
GTEX-QMR6-0011-R1A-SM-32PKW
50-59 years, male
35.5
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y
40-49 years, male
35.5
GTEX-T6MN-0011-R1A-SM-32QOY
50-59 years, male
35.2
GTEX-QDT8-0011-R1A-SM-32PKS
30-39 years, female
35.1
GTEX-X4XX-0011-R1B-SM-3P622
60-69 years, male
35.1
GTEX-1H1CY-0011-R1a-SM-CKZOZ
60-69 years, female
35.1
GTEX-144GO-0011-R1a-SM-5PNWO
60-69 years, male
34.8
GTEX-1GF9W-0011-R1a-SM-9QEIQ
60-69 years, male
34.7
GTEX-1IOXB-0011-R1a-SM-D4P27
50-59 years, male
34.7
GTEX-1H1DG-0011-R1b-SM-CKZP1
70-79 years, male
34.6
GTEX-1CAV2-0011-R1a-SM-ARZML
40-49 years, female
34.5
GTEX-N7MS-0011-R1a-SM-2HMJG
60-69 years, male
34.2
GTEX-ZUA1-0011-R1a-SM-4YCE2
40-49 years, male
34.2
GTEX-1AX9I-0011-R1b-SM-7RHG2
60-69 years, male
34.2
GTEX-1GF9V-0011-R1a-SM-CKZNQ
60-69 years, male
34.1
GTEX-1J8Q2-0011-R1a-SM-D4P2D
60-69 years, male
34.1
GTEX-1F6IF-0011-R1b-SM-9WG78
60-69 years, male
33.8
GTEX-13PDP-0011-R1a-SM-5PNX5
60-69 years, male
33.6
GTEX-1B996-0011-R1b-SM-7P8PO
60-69 years, male
33.6
GTEX-PWO3-0011-R1A-SM-2I5EW
60-69 years, female
33.5
GTEX-11DXW-0011-R1a-SM-DNZZD
40-49 years, male
33.3
GTEX-1B8L1-0011-R1a-SM-7P8SS
60-69 years, male
33.3
GTEX-13O3Q-0011-R1b-SM-5KM3L
50-59 years, male
33.2
GTEX-12WSE-0011-R1b-SM-5GU4V
20-29 years, male
33.1
GTEX-1CB4G-0011-R1b-SM-9QEHT
60-69 years, male
33.1
GTEX-17JCI-0011-R1b-SM-718A3
60-69 years, female
33.0
GTEX-ZAB4-0011-R1a-SM-4RGNO
40-49 years, male
33.0
GTEX-1F48J-0011-R1a-SM-9QEIC
50-59 years, female
32.9
GTEX-15DCD-0011-R1b-SM-6LPIJ
70-79 years, female
32.8
GTEX-1HSMO-0011-R1a-SM-CM2SV
60-69 years, male
32.8
GTEX-13X6I-0011-R1b-SM-5PNZC
60-69 years, male
32.7
GTEX-13OW6-0011-R1a-SM-5L3HQ
50-59 years, male
32.5
GTEX-14PJO-0011-R1b-SM-6AJAK
60-69 years, male
32.5
GTEX-13FXS-0011-R1a-SM-5K7U6
50-59 years, male
32.3
GTEX-TSE9-0011-R1A-SM-3DB7E
60-69 years, female
32.3
GTEX-13OW8-0011-R1a-SM-5L3HI
60-69 years, male
32.1
GTEX-1F6I4-0011-R1a-SM-9OSWU
60-69 years, male
31.9
GTEX-UTHO-0011-R1A-SM-3GIJO
60-69 years, male
31.7
GTEX-1B933-0011-R1b-SM-9QEGW
50-59 years, female
31.7
GTEX-1EKGG-0011-R1b-SM-9QEI1
60-69 years, male
31.6
GTEX-15ER7-0011-R1b-SM-7KUE1
20-29 years, female
31.5
GTEX-1EX96-0011-R1a-SM-CE6R5
50-59 years, male
31.4
GTEX-145LS-0011-R1b-SM-5PNUP
60-69 years, female
31.3
GTEX-NL3H-0011-R1a-SM-48TDJ
60-69 years, male
31.3
GTEX-1H1ZS-0011-R1b-SM-A9G1E
70-79 years, male
31.1
GTEX-1I1HK-0011-R1b-SM-CM2T7
60-69 years, male
31.0
GTEX-14PQA-0011-R1b-SM-6EU1G
50-59 years, female
30.9
GTEX-QVUS-0011-R1A-SM-3GAD2
60-69 years, female
30.9
GTEX-1IKK5-0011-R1b-SM-CE6SQ
60-69 years, male
30.7
GTEX-14JIY-0011-R1a-SM-68713
60-69 years, male
30.6
GTEX-NPJ8-0011-R1a-SM-33HCB
40-49 years, male
30.6
GTEX-QVJO-0011-R1A-SM-2S1QI
60-69 years, female
30.6
GTEX-11GS4-0011-R1a-SM-DO129
60-69 years, male
30.6
GTEX-11TUW-0011-R1a-SM-DO92S
60-69 years, male
30.6
GTEX-1BAJH-0011-R1a-SM-7P8SV
70-79 years, male
30.6
GTEX-1A32A-0011-R1a-SM-7P8SQ
50-59 years, female
30.5
GTEX-1H23P-0011-R1a-SM-ACKVC
60-69 years, male
30.5
GTEX-PVOW-0011-R1A-SM-32PL6
40-49 years, male
30.4
GTEX-1C64N-0011-R1b-SM-7P8Q7
50-59 years, male
30.4
GTEX-XMD1-0011-R1A-SM-4AT4C
60-69 years, male
30.3
GTEX-1GN73-0011-R1a-SM-CKZNT
60-69 years, male
30.2
GTEX-12WSH-0011-R1a-SM-5GU5V
50-59 years, male
30.1
GTEX-1EWIQ-0011-R1a-SM-9OSX7
70-79 years, female
30.1
GTEX-1E2YA-0011-R1b-SM-CJI29
50-59 years, male
30.0
GTEX-11ZVC-0011-R1b-SM-5BC6M
50-59 years, female
29.9
GTEX-1A8G6-0011-R1a-SM-7P8PC
60-69 years, male
29.9
GTEX-1B8SF-0011-R1b-SM-7P8Q8
60-69 years, male
29.9
GTEX-13112-0011-R1b-SM-5HL7K
50-59 years, male
29.8
GTEX-1H3NZ-0011-R1a-SM-CKZP5
60-69 years, male
29.8
GTEX-14E6D-0011-R1b-SM-5YYAW
50-59 years, male
29.7
GTEX-13NZ8-0011-R1b-SM-5KM3V
60-69 years, female
29.4
GTEX-ZF28-0011-R1a-SM-4WWD1
60-69 years, male
29.4
GTEX-12WSD-0011-R1b-SM-5LZVY
60-69 years, female
29.3
GTEX-13N2G-0011-R1b-SM-5MR3G
60-69 years, male
29.3
GTEX-14PJM-0011-R1a-SM-CNPO3
50-59 years, female
29.3
GTEX-11GSO-0011-R1b-SM-57WD3
60-69 years, male
29.2
GTEX-T5JC-0011-R1A-SM-32PM6
20-29 years, male
29.2
GTEX-16Z82-0011-R1b-SM-7EPHZ
60-69 years, male
29.1
GTEX-1212Z-0011-R1b-SM-5BC72
60-69 years, male
28.8
GTEX-14E7W-0011-R1b-SM-5YYAT
70-79 years, male
28.8
GTEX-13JVG-0011-R1a-SM-5KM32
60-69 years, male
28.7
GTEX-17HII-0011-R1b-SM-7MGVW
50-59 years, male
28.7
GTEX-13G51-0011-R1a-SM-5LZYR
60-69 years, male
28.6
GTEX-16XZZ-0011-R1a-SM-7LTAH
60-69 years, male
28.4
GTEX-15UF6-0011-R1a-SM-9QEGH
70-79 years, female
28.4
GTEX-13FTY-0011-R1a-SM-5LZXE
40-49 years, female
28.3
GTEX-N7MT-0011-R1a-SM-CNPO1
60-69 years, female
28.3
GTEX-1EH9U-0011-R1b-SM-CJI2B
60-69 years, male
28.2
GTEX-WVLH-0011-R1A-SM-4MVOK
50-59 years, male
28.1
GTEX-WZTO-0011-R1B-SM-3NMAR
40-49 years, male
28.1
GTEX-1C6VR-0011-R1a-SM-7MXUE
60-69 years, male
28.1
GTEX-NPJ7-0011-R1a-SM-3GACT
60-69 years, female
28.0
GTEX-1GZHY-0011-R1a-SM-CE6RR
50-59 years, female
27.9
GTEX-1H3O1-0011-R1b-SM-CL554
60-69 years, male
27.8
GTEX-1GN1U-0011-R1a-SM-CJI25
50-59 years, female
27.7
GTEX-13FHO-0011-R1b-SM-5KLZG
60-69 years, male
27.6
GTEX-15CHQ-0011-R1a-SM-COH27
60-69 years, male
27.6
GTEX-14ASI-0011-R1b-SM-5S2TY
60-69 years, male
27.5
GTEX-17F97-0011-R1b-SM-7IGM9
50-59 years, male
27.5
GTEX-11GSP-0011-R1a-SM-9QEJ3
60-69 years, female
27.4
GTEX-12WSM-0011-R1a-SM-5LZW6
60-69 years, male
27.3
GTEX-Y8DK-0011-R1A-SM-4RGLO
60-69 years, male
27.3
GTEX-1LB8K-0011-R1b-SM-EZ6MV
50-59 years, male
27.3
GTEX-17MF6-0011-R1a-SM-72D6O
40-49 years, male
27.1
GTEX-1I1GV-0011-R1a-SM-CL559
60-69 years, male
27.1
GTEX-P44H-0011-R1A-SM-3NM8J
40-49 years, male
27.0
GTEX-1J1OQ-0011-R1a-SM-A9G1Z
40-49 years, female
27.0
GTEX-16GPK-0011-R1b-SM-7EWDH
60-69 years, male
26.9
GTEX-ZVZQ-0011-R1a-SM-57WBU
60-69 years, female
26.9
GTEX-1E1VI-0011-R1a-SM-ARZMM
50-59 years, male
26.9
GTEX-1I1GQ-0011-R1a-SM-CY8GG
50-59 years, male
26.9
GTEX-1399T-0011-R1b-SM-5DUWN
60-69 years, male
26.8
GTEX-14C5O-0011-R1b-SM-6AJBW
60-69 years, male
26.4
GTEX-13NZA-0011-R1b-SM-5LUAF
60-69 years, male
26.2
GTEX-1C6VQ-0011-R1a-SM-7P8Q2
50-59 years, male
26.2
GTEX-132Q8-0011-R1a-SM-5EGLK
60-69 years, male
26.1
GTEX-13CF2-0011-R1a-SM-5LZY1
60-69 years, male
26.0
GTEX-1HR98-0011-R1a-SM-ARZLQ
60-69 years, male
26.0
GTEX-13QJC-0011-R1b-SM-5S2UU
60-69 years, female
25.8
GTEX-16NPV-0011-R1b-SM-7MGVZ
50-59 years, female
25.7
GTEX-1GTWX-0011-R1a-SM-CE6RL
60-69 years, male
25.5
GTEX-11ONC-0011-R1a-SM-57WD4
60-69 years, male
25.4
GTEX-17HHY-0011-R1a-SM-7189V
50-59 years, male
25.2
GTEX-13SLW-0011-R1a-SM-5S2W7
70-79 years, male
25.0
GTEX-13S7M-0011-R1b-SM-5PNZE
60-69 years, female
24.9
GTEX-13RTJ-0011-R1a-SM-5O9D9
60-69 years, male
24.8
GTEX-183WM-0011-R1a-SM-718A8
70-79 years, female
24.8
GTEX-14BIM-0011-R1a-SM-69LQI
60-69 years, female
24.6
GTEX-S7SE-0011-R1A-SM-2XCDE
50-59 years, male
24.6
GTEX-YJ89-0011-R1a-SM-4RGLS
60-69 years, male
24.6
GTEX-1H4P4-0011-R1b-SM-CL54V
50-59 years, male
24.6
GTEX-17EVQ-0011-R1a-SM-7189S
70-79 years, male
24.5
GTEX-11WQC-0011-R1b-SM-DO932
60-69 years, male
24.4
GTEX-11UD1-0011-R1b-SM-5BC7D
40-49 years, female
24.2
GTEX-1HBPI-0011-R1b-SM-A9SKF
50-59 years, male
24.2
GTEX-139T8-0011-R1a-SM-5HL75
60-69 years, male
23.8
GTEX-14LZ3-0011-R1a-SM-69LP5
60-69 years, female
23.8
GTEX-13N1W-0011-R1b-SM-5MR4T
70-79 years, male
23.4
GTEX-13OW7-0011-R1b-SM-5L3HF
50-59 years, male
23.3
GTEX-ZE7O-0011-R1a-SM-57WDM
50-59 years, female
22.9
GTEX-1H3VE-0011-R1a-SM-A9G1K
40-49 years, male
22.9
GTEX-17EVP-0011-R1a-SM-7DHLA
40-49 years, male
22.8
GTEX-1GN2E-0011-R1b-SM-CE6RJ
60-69 years, male
22.5
GTEX-1I1GS-0011-R1a-SM-CJI43
60-69 years, male
22.5
GTEX-13OW5-0011-R1b-SM-5L3GE
60-69 years, male
22.3
GTEX-18A6Q-0011-R1b-SM-731DI
60-69 years, male
22.2
GTEX-13FHP-0011-R1b-SM-5K7XL
50-59 years, male
21.8
GTEX-13OVL-0011-R1a-SM-5L3H5
50-59 years, male
21.8
GTEX-OHPN-0011-R1A-SM-2I5GB
60-69 years, female
21.8
GTEX-145LU-0011-R1a-SM-5Q5CE
50-59 years, male
21.5
GTEX-13QIC-0011-R1a-SM-5O9CJ
60-69 years, female
20.9
GTEX-13RTL-0011-R1a-SM-5PNZ8
40-49 years, male
20.7
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
74.0
Mouse sample
Sample description
nTPM
Entorhinal cortex nTPM: 74.0
Samples: 4
Max nTPM: 77.9
Min nTPM: 67.1
Sample A
Male
67.1
Sample B
Male
75.4
Sample C
Female
75.5
Sample D
Female
77.9
Hippocampal formation nTPM: 73.0
Samples: 4
Max nTPM: 79.4
Min nTPM: 67.4
Sample A
Male
79.4
Sample B
Male
72.3
Sample C
Female
72.8
Sample D
Female
67.4
HIPPOCAMPAL FORMATION - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.