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A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
2618.7
nTPM
Monaco:
402.3
nTPM
Schmiedel:
1027.9
TPM
T-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
2618.7
HPA sample
nTPM
gdT-cell nTPM: 1243.6
Samples: 6
Max nTPM: 1525.7
Min nTPM: 1002.8
P10809_1007
1525.7
P10809_1022
1128.1
P10809_1041
1379.0
P10809_1060
1002.8
P10809_1077
1091.3
P10809_1098
1334.4
MAIT T-cell nTPM: 1921.6
Samples: 6
Max nTPM: 2452.1
Min nTPM: 1539.0
P10809_1006
2005.8
P10809_1024
1697.1
P10809_1043
1934.1
P10809_1062
1901.2
P10809_1083
1539.0
P10809_1097
2452.1
Memory CD4 T-cell nTPM: 2394.3
Samples: 6
Max nTPM: 3221.4
Min nTPM: 1567.2
P10809_1014
3221.4
P10809_1026
2766.4
P10809_1045
2222.8
P10809_1064
1913.3
P10809_1086
1567.2
P10809_1113
2674.4
Memory CD8 T-cell nTPM: 1781.7
Samples: 5
Max nTPM: 2217.8
Min nTPM: 1368.3
P10809_1012
2217.8
P10809_1027
1676.7
P10809_1046
1807.7
P10809_1065
1368.3
P10809_1111
1838.0
Naive CD4 T-cell nTPM: 2618.7
Samples: 6
Max nTPM: 3387.0
Min nTPM: 1821.6
P10809_1015
3387.0
P10809_1030
2780.9
P10809_1049
2468.3
P10809_1068
2585.2
P10809_1085
1821.6
P10809_1112
2669.4
Naive CD8 T-cell nTPM: 2250.9
Samples: 6
Max nTPM: 4261.3
Min nTPM: 1135.9
P10809_1016
4261.3
P10809_1031
2124.2
P10809_1050
1865.9
P10809_1069
1848.5
P10809_1087
1135.9
P10809_1110
2269.4
T-reg nTPM: 2026.7
Samples: 6
Max nTPM: 2218.7
Min nTPM: 1763.2
P10809_1018
2153.5
P10809_1037
1763.2
P10809_1056
2218.7
P10809_1075
1945.8
P10809_1094
2150.3
P10809_1106
1928.7
T-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
402.3
Monaco sample
nTPM
Central memory CD8 T-cell nTPM: 290.9
Samples: 4
Max nTPM: 499.0
Min nTPM: 104.6
RHH5202_R3573
104.6
RHH5230_R3602
384.8
RHH5259_R3631
499.0
RHH5288_R3660
175.1
Effector memory CD8 T-cell nTPM: 135.6
Samples: 4
Max nTPM: 269.7
Min nTPM: 72.6
RHH5203_R3574
72.6
RHH5231_R3603
109.8
RHH5260_R3632
269.7
RHH5289_R3661
90.3
MAIT T-cell nTPM: 208.1
Samples: 4
Max nTPM: 273.6
Min nTPM: 102.1
RHH5233_R3605
102.1
RHH5205_R3576
273.6
RHH5262_R3634
270.0
RHH5297_R3663
186.7
Memory CD4 T-cell TFH nTPM: 187.7
Samples: 4
Max nTPM: 235.5
Min nTPM: 131.2
RHH5300_R3666
191.6
RHH5236_R3608
235.5
RHH5265_R3637
192.5
RHH5208_R3579
131.2
Memory CD4 T-cell Th1 nTPM: 402.3
Samples: 4
Max nTPM: 778.6
Min nTPM: 109.7
RHH5210_R3581
109.7
RHH5302_R3668
270.8
RHH5238_R3610
778.6
RHH5267_R3639
450.1
Memory CD4 T-cell Th1/Th17 nTPM: 337.7
Samples: 4
Max nTPM: 523.4
Min nTPM: 156.8
RHH5303_R3669
237.7
RHH5211_R3582
156.8
RHH5239_R3611
432.7
RHH5268_R3640
523.4
Memory CD4 T-cell Th17 nTPM: 322.4
Samples: 4
Max nTPM: 463.2
Min nTPM: 142.6
RHH5304_R3670
463.2
RHH5212_R3583
142.6
RHH5240_R3612
371.3
RHH5269_R3641
312.3
Memory CD4 T-cell Th2 nTPM: 342.0
Samples: 4
Max nTPM: 561.0
Min nTPM: 239.4
RHH5305_R3671
561.0
RHH5213_R3584
245.6
RHH5241_R3613
239.4
RHH5270_R3642
321.8
Naive CD4 T-cell nTPM: 400.8
Samples: 4
Max nTPM: 525.9
Min nTPM: 237.5
RHH5306_R3672
525.9
RHH5214_R3585
448.9
RHH5242_R3614
237.5
RHH5271_R3643
390.8
Naive CD8 T-cell nTPM: 366.5
Samples: 4
Max nTPM: 585.1
Min nTPM: 201.3
RHH5201_R3572
201.3
RHH5229_R3601
585.1
RHH5258_R3630
216.7
RHH5287_R3659
463.0
Non-Vd2 gdTCR nTPM: 141.7
Samples: 4
Max nTPM: 226.6
Min nTPM: 101.2
RHH5235_R3607
226.6
RHH5264_R3636
118.1
RHH5207_R3578
101.2
RHH5299_R3665
120.9
T-reg nTPM: 273.9
Samples: 4
Max nTPM: 367.7
Min nTPM: 173.9
RHH5301_R3667
240.4
RHH5237_R3609
173.9
RHH5266_R3638
367.7
RHH5209_R3580
313.4
Terminal effector memory CD4 T-cell nTPM: 180.7
Samples: 2
Max nTPM: 241.4
Min nTPM: 120.0
RHH5243_R3615
241.4
RHH5272_R3644
120.0
Terminal effector memory CD8 T-cell nTPM: 178.2
Samples: 4
Max nTPM: 293.7
Min nTPM: 81.2
RHH5232_R3604
81.2
RHH5204_R3575
213.2
RHH5261_R3633
293.7
RHH5296_R3662
124.5
Vd2 gdTCR nTPM: 292.6
Samples: 4
Max nTPM: 451.7
Min nTPM: 191.6
RHH5234_R3606
191.6
RHH5206_R3577
451.7
RHH5263_R3635
321.3
RHH5298_R3664
205.6
T-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
The Human Protein Atlas project is funded
