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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
h
m
l
n
Ganglion cells :
Not detected
Inner nuclear layer:
Not detected
Inner plexiform layer:
Not detected
Limiting membrane:
Not detected
Nerve fiber layer:
Not detected
Outer plexiform layer:
Not detected
Photoreceptor cells:
High
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
307.1
nTPM
GTEx:
307.1
nTPM
FANTOM5:
221.4
Scaled Tags Per Million
Pig:
475.9
nTPM
Mouse:
2316.1
nTPM
RETINA - Extended tissue profilei
For selected proteins extended tissue profiling is performed in addition to standard tissue microarrays. The section below contains results from the extended profiling.
, antibody CAB026066
Photoreceptor cells
High
Immunohistochemical staining of human retina shows strong nuclear positivity in rods.
50 ฮผm
Limiting membrane
Not detected
Outer plexiform layer
Not detected
Inner nuclear layer
Not detected
Inner plexiform layer
Not detected
Ganglion cells
Not detected
Nerve fiber layer
Not detected
RETINA - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
307.1
GTEx sample id
Sample description
nTPM
Retina Average nTPM: 307.1
Samples: 105
Max nTPM: 686.5
Min nTPM: 83.9
Std nTPM: 132.4
Median nTPM:
352_1
62 years, male
686.5
319_1
81 years, male
598.2
316_1
62 years, male
573.9
322_1
76 years, male
567.9
218_1
71 years, female
555.3
163_1
78 years, male
552.3
321_1
62 years, female
550.9
354_1
81 years, female
533.9
386_1
76 years, male
502.3
447_1
81 years, male
483.8
6_1
73 years, female
481.9
377_1
82 years, female
479.0
355_1
70 years, female
478.7
425_1
59 years, female
464.3
172_1
72 years, female
451.2
353_1
82 years, female
431.9
376_1
75 years, female
428.8
406_1
79 years, male
426.0
356_1
87 years, female
424.7
318_1
68 years, male
418.0
375_1
74 years, female
418.0
320_1
89 years, female
416.7
480_1
63 years, male
416.3
350_1
84 years, female
415.5
286_1
68 years, female
414.8
292_1
71 years, male
406.6
405_1
91 years, male
403.6
394_1
75 years, female
394.0
404_1
82 years, female
392.7
251_1
78 years, male
385.6
389_1
86 years, female
385.4
503_1
68 years, male
382.4
177_1
74 years, male
379.3
335_1
73 years, female
372.8
243_1
75 years, male
372.7
379_1
60 years, male
372.3
349_1
83 years, male
369.6
2_1
77 years, female
369.0
237_1
82 years, male
366.1
229_1
69 years, female
361.0
348_1
84 years, male
356.5
189_1
76 years, male
338.0
293_1
68 years, female
336.0
396_1
62 years, male
332.6
35_1
74 years, female
328.7
351_1
91 years, male
327.5
517_1
88 years, male
324.1
153_1
70 years, female
315.2
246_1
77 years, male
315.0
217_1
76 years, male
308.0
384_1
83 years, male
307.8
526_1
61 years, male
296.3
265_1
87 years, male
292.3
291_1
76 years, male
287.5
468_1
89 years, male
282.7
324_1
76 years, male
280.0
317_1
60 years, male
271.1
452_1
88 years, female
267.4
347_1
72 years, male
266.5
518_1
75 years, female
265.1
126_1
63 years, male
262.5
266_1
85 years, male
262.2
17_1
71 years, male
261.6
115_1
83 years, male
259.5
295_1
61 years, female
253.1
264_1
73 years, female
252.5
99_1
64 years, male
252.2
139_1
64 years, female
251.6
173_1
67 years, male
245.8
506_1
65 years, male
241.3
499_1
55 years, female
232.8
4_1
88 years, female
225.8
311_1
78 years, male
222.2
254_1
77 years, female
222.1
145_1
84 years, male
216.0
9_1
66 years, female
215.2
137_1
83 years, male
203.4
495_1
57 years, female
194.1
415_1
77 years, female
190.7
120_1
70 years, female
189.4
18_1
88 years, male
189.2
288_1
66 years, female
189.2
142_1
61 years, female
188.1
307_1
66 years, female
187.6
43_1
64 years, female
186.6
81_1
67 years, male
169.5
117_1
61 years, male
165.6
414_1
84 years, female
162.5
466_1
57 years, female
161.1
109_1
81 years, female
155.5
315_1
62 years, female
154.9
32_1
67 years, male
152.3
314_1
67 years, male
144.2
162_1
79 years, female
144.0
313_1
79 years, female
139.0
41_1
94 years, female
138.6
308_1
70 years, female
135.4
42_1
85 years, male
132.5
149_1
88 years, male
117.0
119_1
70 years, female
115.5
89_1
63 years, male
111.9
490_1
67 years, female
103.7
501_1
88 years, male
92.1
413_1
59 years, female
91.8
491_1
89 years, female
83.9
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RETINA - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.