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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
h
m
l
n
Glial cells:
Not detected
Neuronal cells:
Not detected
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
90.6
nTPM
HPA Brain:
69.1
nTPM
GTEx:
90.6
nTPM
FANTOM5:
17.4
Scaled Tags Per Million
Pig:
39.2
nTPM
Mouse:
57.6
nTPM
Allen mouse:
0.6
Expression energy
HIPPOCAMPUS - Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
Antibody CAB011201
Glial cells
Not detected
Neuronal cells
Not detected
HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
69.1
Sample id
Sample description
nTPM
Hippocampus nTPM: 54.6
1898
Male, age 80, left hemisphere
73.5
2621
Female, age 67, right hemisphere
64.6
2529
Female, age 94, left hemisphere
52.1
2148
Female, age 91, left hemisphere
47.2
1911
Female, age 85, right hemisphere
45.8
1855
Male, age 76, left hemisphere
44.6
Dentate gyrus nTPM: 57.0
2530
Female, age 94, left hemisphere
77.9
1927
Female, age 91, both hemispheres
63.3
2246
Female, age 85, both hemispheres
52.1
2528
Male, age 74, both hemispheres
51.0
2010
Male, age 76, both hemispheres
50.2
2531
Female, age 67, both hemispheres
47.8
Entorhinal gyrus nTPM: 62.4
2613
Female, age 94, left hemisphere
87.7
2764
Male, age 80, right hemisphere
73.2
1938
Female, age 85, left hemisphere
64.8
1787
Male, age 76, left hemisphere
56.8
2686
Male, age 75, right hemisphere
51.8
2117
Female, age 91, right hemisphere
40.5
Hippocampus, CA1 nTPM: 62.1
2749
Male, age 80, left hemisphere
112.0
2527
Male, age 74, both hemispheres
64.8
2082
Female, age 91, right hemisphere
47.8
1873
Female, age 85, both hemispheres
47.5
2045
Male, age 76, both hemispheres
38.6
Hippocampus, CA2 nTPM: 59.2
1963
Male, age 80, left hemisphere
75.1
2437
Female, age 94, left hemisphere
67.4
2249
Male, age 74, both hemispheres
55.6
1892
Male, age 76, both hemispheres
54.9
1940
Female, age 85, left hemisphere
53.4
2113
Female, age 91, right hemisphere
48.8
Hippocampus, CA3 nTPM: 56.1
2137
Male, age 80, left hemisphere
85.7
2861
Female, age 67, both hemispheres
61.9
2436
Male, age 74, both hemispheres
49.6
1867
Male, age 76, both hemispheres
48.0
2620
Female, age 94, left hemisphere
47.6
1891
Female, age 85, both hemispheres
43.7
Parahippocampal cortex nTPM: 59.6
2245
Female, age 91, both hemispheres
67.7
2250
Female, age 67, right hemisphere
67.3
1850
Male, age 80, both hemispheres
64.9
1933
Female, age 85, both hemispheres
63.8
1990
Female, age 91, right hemisphere
60.4
2622
Female, age 67, right hemisphere
60.1
2693
Female, age 94, both hemispheres
56.7
2692
Male, age 74, both hemispheres
55.9
2532
Female, age 72, left hemisphere
52.9
2018
Male, age 76, both hemispheres
46.7
Perirhinal gyrus nTPM: 69.1
1847
Female, age 91, left hemisphere
83.3
2521
Female, age 94, right hemisphere
81.3
1794
Male, age 80, right hemisphere
73.7
1841
Female, age 85, right hemisphere
63.3
2848
Male, age 76, right hemisphere
43.7
Subiculum nTPM: 52.4
1977
Female, age 85, both hemispheres
63.6
2619
Male, age 74, both hemispheres
63.0
1901
Male, age 80, both hemispheres
59.0
2438
Female, age 94, left hemisphere
54.9
2042
Male, age 76, both hemispheres
37.6
2729
Female, age 91, right hemisphere
36.4
HIPPOCAMPAL FORMATION - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
90.6
GTEx sample id
Sample description
nTPM
Brain - Hippocampus Average nTPM: 90.6
Samples: 197
Max nTPM: 251.3
Min nTPM: 25.4
Std nTPM: 40.6
Median nTPM: 85.2
GTEX-1HT8W-0011-R1b-SM-CJI3V
30-39 years, male
251.3
GTEX-144GL-0011-R1a-SM-5PNZ5
50-59 years, male
220.6
GTEX-13NYB-0011-R1b-SM-5KM4F
40-49 years, male
201.7
GTEX-14LLW-0011-R1a-SM-5ZZVD
70-79 years, female
193.5
GTEX-12WSE-0011-R1b-SM-5GU4V
20-29 years, male
183.8
GTEX-1F75A-0011-R1b-SM-CE6RA
50-59 years, male
183.8
GTEX-14PN4-0011-R1b-SM-69LP8
50-59 years, male
178.9
GTEX-1GMR8-0011-R1b-SM-CJI2O
50-59 years, female
178.2
GTEX-13O3Q-0011-R1b-SM-5KM3L
50-59 years, male
173.6
GTEX-1IOXB-0011-R1a-SM-D4P27
50-59 years, male
172.3
GTEX-13FLW-0011-R1b-SM-5LZX2
50-59 years, male
171.1
GTEX-11EI6-0011-R1a-SM-DO93L
60-69 years, male
163.4
GTEX-1LG7Y-0011-R1a-SM-EYYWV
50-59 years, male
161.1
GTEX-145MH-0011-R1b-SM-5PNWY
50-59 years, male
157.5
GTEX-13FXS-0011-R1a-SM-5K7U6
50-59 years, male
153.7
GTEX-13PDP-0011-R1a-SM-5PNX5
60-69 years, male
149.8
GTEX-1CB4G-0011-R1b-SM-9QEHT
60-69 years, male
148.5
GTEX-11DXW-0011-R1a-SM-DNZZD
40-49 years, male
147.0
GTEX-13O3O-0011-R1b-SM-5KM2K
60-69 years, female
144.3
GTEX-ZF28-0011-R1a-SM-4WWD1
60-69 years, male
142.7
GTEX-NL3H-0011-R1a-SM-48TDJ
60-69 years, male
141.7
GTEX-RNOR-0011-R1A-SM-CNNP5
50-59 years, female
139.1
GTEX-1ICLZ-0011-R1b-SM-A9SM3
60-69 years, male
135.8
GTEX-16YQH-0011-R1a-SM-7LT8R
30-39 years, male
135.0
GTEX-17HG3-0011-R1a-SM-7LG6H
30-39 years, female
133.1
GTEX-P44G-0011-R1A-SM-2I3FE
30-39 years, male
133.0
GTEX-1EWIQ-0011-R1a-SM-9OSX7
70-79 years, female
132.4
GTEX-1GF9W-0011-R1a-SM-9QEIQ
60-69 years, male
131.1
GTEX-1HSMO-0011-R1a-SM-CM2SV
60-69 years, male
129.7
GTEX-1F6I4-0011-R1a-SM-9OSWU
60-69 years, male
129.3
GTEX-13FTY-0011-R1a-SM-5LZXE
40-49 years, female
128.7
GTEX-1F48J-0011-R1a-SM-9QEIC
50-59 years, female
128.6
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y
40-49 years, male
128.6
GTEX-N7MS-0011-R1a-SM-2HMJG
60-69 years, male
126.5
GTEX-1313W-0011-R1b-SM-5EQ4A
50-59 years, female
126.4
GTEX-139TT-0011-R1a-SM-5LZVD
60-69 years, male
125.8
GTEX-ZDXO-0011-R1a-SM-4WKF4
60-69 years, male
125.5
GTEX-1399T-0011-R1b-SM-5DUWN
60-69 years, male
125.0
GTEX-WL46-0011-R1A-SM-3LK6M
50-59 years, male
124.1
GTEX-12WSH-0011-R1a-SM-5GU5V
50-59 years, male
123.6
GTEX-14ABY-0011-R1a-SM-6EU2W
50-59 years, male
123.3
GTEX-1EX96-0011-R1a-SM-CE6R5
50-59 years, male
122.2
GTEX-WHSE-0011-R1A-SM-3P5ZK
20-29 years, male
118.8
GTEX-1H3VE-0011-R1a-SM-A9G1K
40-49 years, male
117.7
GTEX-1B933-0011-R1b-SM-9QEGW
50-59 years, female
116.8
GTEX-12WSF-0011-R1a-SM-5DUVI
70-79 years, male
116.1
GTEX-1I1HK-0011-R1b-SM-CM2T7
60-69 years, male
116.1
GTEX-13112-0011-R1b-SM-5HL7K
50-59 years, male
115.3
GTEX-WVLH-0011-R1A-SM-4MVOK
50-59 years, male
113.9
GTEX-1B8SF-0011-R1b-SM-7P8Q8
60-69 years, male
113.3
GTEX-X585-0011-R1B-SM-46MVE
50-59 years, male
112.9
GTEX-12ZZX-0011-R1a-SM-5EQ6B
40-49 years, female
112.1
GTEX-1GN73-0011-R1a-SM-CKZNT
60-69 years, male
109.4
GTEX-1C6VR-0011-R1a-SM-7MXUE
60-69 years, male
108.1
GTEX-Q2AG-0011-R1A-SM-2HMJI
40-49 years, female
107.9
GTEX-T5JC-0011-R1A-SM-32PM6
20-29 years, male
107.7
GTEX-13N2G-0011-R1b-SM-5MR3G
60-69 years, male
107.6
GTEX-ZE7O-0011-R1a-SM-57WDM
50-59 years, female
107.6
GTEX-12WSD-0011-R1b-SM-5LZVY
60-69 years, female
107.3
GTEX-11GS4-0011-R1a-SM-DO129
60-69 years, male
107.3
GTEX-ZAB4-0011-R1a-SM-4RGNO
40-49 years, male
106.9
GTEX-P44H-0011-R1A-SM-3NM8J
40-49 years, male
106.7
GTEX-1GN1U-0011-R1a-SM-CJI25
50-59 years, female
106.4
GTEX-WWYW-0011-R1A-SM-3TW8G
50-59 years, female
106.0
GTEX-T6MN-0011-R1A-SM-32QOY
50-59 years, male
105.9
GTEX-14JIY-0011-R1a-SM-68713
60-69 years, male
105.4
GTEX-R55E-0011-R1A-SM-2TC6N
20-29 years, male
104.1
GTEX-TSE9-0011-R1A-SM-3DB7E
60-69 years, female
103.9
GTEX-17JCI-0011-R1b-SM-718A3
60-69 years, female
103.7
GTEX-YFC4-0011-R1a-SM-4V6EH
40-49 years, female
103.4
GTEX-1GTWX-0011-R1a-SM-CE6RL
60-69 years, male
102.9
GTEX-16Z82-0011-R1b-SM-7EPHZ
60-69 years, male
101.1
GTEX-1HGF4-0011-R1a-SM-CJI3S
60-69 years, male
99.9
GTEX-1A8G6-0011-R1a-SM-7P8PC
60-69 years, male
99.8
GTEX-13SLW-0011-R1a-SM-5S2W7
70-79 years, male
98.9
GTEX-1IDJH-0011-R1b-SM-ARU6U
70-79 years, male
98.5
GTEX-1B8L1-0011-R1a-SM-7P8SS
60-69 years, male
98.3
GTEX-PVOW-0011-R1A-SM-32PL6
40-49 years, male
97.9
GTEX-WZTO-0011-R1B-SM-3NMAR
40-49 years, male
97.9
GTEX-1C64N-0011-R1b-SM-7P8Q7
50-59 years, male
97.7
GTEX-1EMGI-0011-R1b-SM-9OSWZ
60-69 years, male
97.4
GTEX-12WSM-0011-R1a-SM-5LZW6
60-69 years, male
96.0
GTEX-13OW6-0011-R1a-SM-5L3HQ
50-59 years, male
95.6
GTEX-1I1GS-0011-R1a-SM-CJI43
60-69 years, male
95.4
GTEX-14E6D-0011-R1b-SM-5YYAW
50-59 years, male
95.2
GTEX-17HHY-0011-R1a-SM-7189V
50-59 years, male
94.5
GTEX-13NYS-0011-R1b-SM-5MR55
60-69 years, male
93.6
GTEX-131XH-0011-R1a-SM-5DUWA
50-59 years, male
93.0
GTEX-14ASI-0011-R1b-SM-5S2TY
60-69 years, male
92.6
GTEX-14C5O-0011-R1b-SM-6AJBW
60-69 years, male
92.1
GTEX-13RTL-0011-R1a-SM-5PNZ8
40-49 years, male
89.3
GTEX-1A3MX-0011-R1b-SM-7P8PH
60-69 years, male
88.6
GTEX-1AX9I-0011-R1b-SM-7RHG2
60-69 years, male
88.6
GTEX-1EH9U-0011-R1b-SM-CJI2B
60-69 years, male
87.9
GTEX-13JUV-0011-R1a-SM-5LZY4
40-49 years, female
87.8
GTEX-13FHP-0011-R1b-SM-5K7XL
50-59 years, male
87.3
GTEX-1GF9V-0011-R1a-SM-CKZNQ
60-69 years, male
86.6
GTEX-13X6I-0011-R1b-SM-5PNZC
60-69 years, male
85.4
GTEX-Y8DK-0011-R1A-SM-4RGLO
60-69 years, male
85.2
GTEX-1IKK5-0011-R1b-SM-CE6SQ
60-69 years, male
83.9
GTEX-17HII-0011-R1b-SM-7MGVW
50-59 years, male
83.0
GTEX-1H3NZ-0011-R1a-SM-CKZP5
60-69 years, male
82.9
GTEX-1H1ZS-0011-R1b-SM-A9G1E
70-79 years, male
82.6
GTEX-1J1OQ-0011-R1a-SM-A9G1Z
40-49 years, female
81.9
GTEX-1EKGG-0011-R1b-SM-9QEI1
60-69 years, male
81.5
GTEX-132Q8-0011-R1a-SM-5EGLK
60-69 years, male
79.9
GTEX-1H3O1-0011-R1b-SM-CL554
60-69 years, male
79.6
GTEX-17F97-0011-R1b-SM-7IGM9
50-59 years, male
78.3
GTEX-13OW7-0011-R1b-SM-5L3HF
50-59 years, male
77.8
GTEX-QMR6-0011-R1A-SM-32PKW
50-59 years, male
77.8
GTEX-131YS-0011-R1a-SM-5DUXC
60-69 years, female
77.7
GTEX-144GO-0011-R1a-SM-5PNWO
60-69 years, male
77.7
GTEX-11UD1-0011-R1b-SM-5BC7D
40-49 years, female
75.9
GTEX-1LB8K-0011-R1b-SM-EZ6MV
50-59 years, male
75.8
GTEX-16XZZ-0011-R1a-SM-7LTAH
60-69 years, male
75.7
GTEX-N7MT-0011-R1a-SM-CNPO1
60-69 years, female
74.8
GTEX-139T8-0011-R1a-SM-5HL75
60-69 years, male
74.0
GTEX-13N1W-0011-R1b-SM-5MR4T
70-79 years, male
73.5
GTEX-13OVJ-0011-R1b-SM-5L3I6
50-59 years, female
73.4
GTEX-X4XX-0011-R1B-SM-3P622
60-69 years, male
73.1
GTEX-QDT8-0011-R1A-SM-32PKS
30-39 years, female
72.4
GTEX-ZUA1-0011-R1a-SM-4YCE2
40-49 years, male
72.3
GTEX-15DCD-0011-R1b-SM-6LPIJ
70-79 years, female
71.8
GTEX-15CHQ-0011-R1a-SM-COH27
60-69 years, male
71.7
GTEX-1H1CY-0011-R1a-SM-CKZOZ
60-69 years, female
71.6
GTEX-13JVG-0011-R1a-SM-5KM32
60-69 years, male
71.5
GTEX-1J8Q2-0011-R1a-SM-D4P2D
60-69 years, male
71.1
GTEX-13FHO-0011-R1b-SM-5KLZG
60-69 years, male
70.7
GTEX-YJ89-0011-R1a-SM-4RGLS
60-69 years, male
69.9
GTEX-1H1DG-0011-R1b-SM-CKZP1
70-79 years, male
69.4
GTEX-1IY9M-0011-R1a-SM-EXURZ
60-69 years, male
69.0
GTEX-1HSKV-0011-R1b-SM-CMKH7
60-69 years, male
68.9
GTEX-ZVZQ-0011-R1a-SM-57WBU
60-69 years, female
68.8
GTEX-11WQC-0011-R1b-SM-DO932
60-69 years, male
68.3
GTEX-QVJO-0011-R1A-SM-2S1QI
60-69 years, female
66.9
GTEX-S7SE-0011-R1A-SM-2XCDE
50-59 years, male
66.9
GTEX-14PJM-0011-R1a-SM-CNPO3
50-59 years, female
66.8
GTEX-1B996-0011-R1b-SM-7P8PO
60-69 years, male
66.7
GTEX-11GSP-0011-R1a-SM-9QEJ3
60-69 years, female
65.9
GTEX-14BIM-0011-R1a-SM-69LQI
60-69 years, female
65.8
GTEX-13CF2-0011-R1a-SM-5LZY1
60-69 years, male
65.1
GTEX-145LS-0011-R1b-SM-5PNUP
60-69 years, female
64.8
GTEX-1HBPI-0011-R1b-SM-A9SKF
50-59 years, male
64.1
GTEX-1E1VI-0011-R1a-SM-ARZMM
50-59 years, male
62.4
GTEX-15ER7-0011-R1b-SM-7KUE1
20-29 years, female
62.2
GTEX-145LU-0011-R1a-SM-5Q5CE
50-59 years, male
62.0
GTEX-16GPK-0011-R1b-SM-7EWDH
60-69 years, male
62.0
GTEX-13OW5-0011-R1b-SM-5L3GE
60-69 years, male
61.5
GTEX-17MF6-0011-R1a-SM-72D6O
40-49 years, male
61.0
GTEX-15UF6-0011-R1a-SM-9QEGH
70-79 years, female
60.4
GTEX-X4EP-0011-R1A-SM-3P624
60-69 years, female
59.4
GTEX-1GN2E-0011-R1b-SM-CE6RJ
60-69 years, male
59.0
GTEX-1I1GQ-0011-R1a-SM-CY8GG
50-59 years, male
58.1
GTEX-1HR98-0011-R1a-SM-ARZLQ
60-69 years, male
57.5
GTEX-1CAV2-0011-R1a-SM-ARZML
40-49 years, female
56.9
GTEX-13S7M-0011-R1b-SM-5PNZE
60-69 years, female
56.5
GTEX-13NZ8-0011-R1b-SM-5KM3V
60-69 years, female
56.4
GTEX-14LZ3-0011-R1a-SM-69LP5
60-69 years, female
54.7
GTEX-11ONC-0011-R1a-SM-57WD4
60-69 years, male
52.0
GTEX-16NPV-0011-R1b-SM-7MGVZ
50-59 years, female
51.7
GTEX-1C6VQ-0011-R1a-SM-7P8Q2
50-59 years, male
51.3
GTEX-14PQA-0011-R1b-SM-6EU1G
50-59 years, female
51.2
GTEX-OHPN-0011-R1A-SM-2I5GB
60-69 years, female
50.6
GTEX-13G51-0011-R1a-SM-5LZYR
60-69 years, male
49.4
GTEX-11TUW-0011-R1a-SM-DO92S
60-69 years, male
48.9
GTEX-1F6IF-0011-R1b-SM-9WG78
60-69 years, male
48.7
GTEX-XMD1-0011-R1A-SM-4AT4C
60-69 years, male
48.5
GTEX-PWO3-0011-R1A-SM-2I5EW
60-69 years, female
48.3
GTEX-14PJO-0011-R1b-SM-6AJAK
60-69 years, male
48.1
GTEX-1A32A-0011-R1a-SM-7P8SQ
50-59 years, female
47.9
GTEX-1E2YA-0011-R1b-SM-CJI29
50-59 years, male
47.4
GTEX-17EVP-0011-R1a-SM-7DHLA
40-49 years, male
46.7
GTEX-NPJ7-0011-R1a-SM-3GACT
60-69 years, female
46.4
GTEX-1F75W-0011-R1a-SM-ARU81
60-69 years, male
46.1
GTEX-1H4P4-0011-R1b-SM-CL54V
50-59 years, male
46.0
GTEX-11ZTS-0011-R1a-SM-5BC71
60-69 years, female
44.4
GTEX-1212Z-0011-R1b-SM-5BC72
60-69 years, male
44.4
GTEX-11GSO-0011-R1b-SM-57WD3
60-69 years, male
41.0
GTEX-1BAJH-0011-R1a-SM-7P8SV
70-79 years, male
40.5
GTEX-17EVQ-0011-R1a-SM-7189S
70-79 years, male
39.6
GTEX-14E7W-0011-R1b-SM-5YYAT
70-79 years, male
39.4
GTEX-UTHO-0011-R1A-SM-3GIJO
60-69 years, male
38.8
GTEX-13OW8-0011-R1a-SM-5L3HI
60-69 years, male
38.6
GTEX-183WM-0011-R1a-SM-718A8
70-79 years, female
38.1
GTEX-11ZVC-0011-R1b-SM-5BC6M
50-59 years, female
37.3
GTEX-18A6Q-0011-R1b-SM-731DI
60-69 years, male
36.6
GTEX-1GZHY-0011-R1a-SM-CE6RR
50-59 years, female
36.0
GTEX-13QIC-0011-R1a-SM-5O9CJ
60-69 years, female
35.7
GTEX-13QJC-0011-R1b-SM-5S2UU
60-69 years, female
34.6
GTEX-13OVL-0011-R1a-SM-5L3H5
50-59 years, male
34.2
GTEX-1I1GV-0011-R1a-SM-CL559
60-69 years, male
34.0
GTEX-1H23P-0011-R1a-SM-ACKVC
60-69 years, male
31.4
GTEX-13NZA-0011-R1b-SM-5LUAF
60-69 years, male
30.8
GTEX-1CB4J-0011-R1a-SM-9WG64
60-69 years, male
29.4
GTEX-NPJ8-0011-R1a-SM-33HCB
40-49 years, male
26.2
GTEX-QVUS-0011-R1A-SM-3GAD2
60-69 years, female
25.7
GTEX-13RTJ-0011-R1a-SM-5O9D9
60-69 years, male
25.4
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
57.6
Mouse sample
Sample description
nTPM
Entorhinal cortex nTPM: 55.5
Samples: 4
Max nTPM: 58.7
Min nTPM: 52.7
Sample A
Male
54.8
Sample B
Male
58.7
Sample C
Female
52.7
Sample D
Female
55.6
Hippocampal formation nTPM: 57.6
Samples: 4
Max nTPM: 60.2
Min nTPM: 55.4
Sample A
Male
55.4
Sample B
Male
57.5
Sample C
Female
60.2
Sample D
Female
57.4
HIPPOCAMPAL FORMATION - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.