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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
h
m
l
n
Glial cells:
Not detected
Neuronal cells:
Not detected
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
148.3
nTPM
HPA Brain:
477.6
nTPM
GTEx:
148.3
nTPM
FANTOM5:
1473.0
Scaled Tags Per Million
Pig:
407.9
nTPM
Mouse:
246.6
nTPM
Allen mouse:
17.9
Expression energy
HIPPOCAMPUS - Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
Antibody HPA010698
Glial cells
Not detected
Neuronal cells
Not detected
HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
477.6
Sample id
Sample description
nTPM
Hippocampus nTPM: 434.9
2148
Female, age 91, left hemisphere
478.4
2529
Female, age 94, left hemisphere
478.4
2621
Female, age 67, right hemisphere
454.6
1855
Male, age 76, left hemisphere
454.0
1911
Female, age 85, right hemisphere
376.2
1898
Male, age 80, left hemisphere
368.0
Dentate gyrus nTPM: 338.8
2246
Female, age 85, both hemispheres
456.1
2528
Male, age 74, both hemispheres
430.1
2530
Female, age 94, left hemisphere
324.7
1927
Female, age 91, both hemispheres
303.2
2010
Male, age 76, both hemispheres
264.4
2531
Female, age 67, both hemispheres
254.2
Entorhinal gyrus nTPM: 422.4
2117
Female, age 91, right hemisphere
559.4
1938
Female, age 85, left hemisphere
515.1
2686
Male, age 75, right hemisphere
476.8
1787
Male, age 76, left hemisphere
369.0
2764
Male, age 80, right hemisphere
309.2
2613
Female, age 94, left hemisphere
305.0
Hippocampus, CA1 nTPM: 359.1
2527
Male, age 74, both hemispheres
576.8
1873
Female, age 85, both hemispheres
326.6
2082
Female, age 91, right hemisphere
316.1
2749
Male, age 80, left hemisphere
306.6
2045
Male, age 76, both hemispheres
269.3
Hippocampus, CA2 nTPM: 367.4
1940
Female, age 85, left hemisphere
491.8
2249
Male, age 74, both hemispheres
465.7
2113
Female, age 91, right hemisphere
386.5
2437
Female, age 94, left hemisphere
347.5
1963
Male, age 80, left hemisphere
270.2
1892
Male, age 76, both hemispheres
242.4
Hippocampus, CA3 nTPM: 346.1
2436
Male, age 74, both hemispheres
467.5
2861
Female, age 67, both hemispheres
380.9
1891
Female, age 85, both hemispheres
346.6
2137
Male, age 80, left hemisphere
304.5
2620
Female, age 94, left hemisphere
298.0
1867
Male, age 76, both hemispheres
278.9
Parahippocampal cortex nTPM: 477.6
2692
Male, age 74, both hemispheres
677.8
2250
Female, age 67, right hemisphere
663.8
2622
Female, age 67, right hemisphere
647.0
1933
Female, age 85, both hemispheres
523.6
2245
Female, age 91, both hemispheres
456.2
2693
Female, age 94, both hemispheres
400.7
2532
Female, age 72, left hemisphere
378.4
1850
Male, age 80, both hemispheres
366.7
1990
Female, age 91, right hemisphere
335.4
2018
Male, age 76, both hemispheres
326.2
Perirhinal gyrus nTPM: 363.5
1794
Male, age 80, right hemisphere
401.8
1841
Female, age 85, right hemisphere
397.9
2521
Female, age 94, right hemisphere
363.8
1847
Female, age 91, left hemisphere
335.7
2848
Male, age 76, right hemisphere
318.5
Subiculum nTPM: 419.0
2619
Male, age 74, both hemispheres
632.7
2438
Female, age 94, left hemisphere
469.0
2729
Female, age 91, right hemisphere
434.9
2042
Male, age 76, both hemispheres
332.5
1977
Female, age 85, both hemispheres
330.0
1901
Male, age 80, both hemispheres
314.8
HIPPOCAMPAL FORMATION - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
148.3
GTEx sample id
Sample description
nTPM
Brain - Hippocampus Average nTPM: 148.3
Samples: 197
Max nTPM: 469.4
Min nTPM: 32.5
Std nTPM: 80.2
Median nTPM: 128.8
GTEX-13OW8-0011-R1a-SM-5L3HI
60-69 years, male
469.4
GTEX-P44G-0011-R1A-SM-2I3FE
30-39 years, male
408.3
GTEX-1GMR8-0011-R1b-SM-CJI2O
50-59 years, female
407.6
GTEX-13NYS-0011-R1b-SM-5MR55
60-69 years, male
405.4
GTEX-13OVJ-0011-R1b-SM-5L3I6
50-59 years, female
386.1
GTEX-1CAV2-0011-R1a-SM-ARZML
40-49 years, female
338.5
GTEX-17JCI-0011-R1b-SM-718A3
60-69 years, female
334.3
GTEX-14PQA-0011-R1b-SM-6EU1G
50-59 years, female
328.8
GTEX-1B996-0011-R1b-SM-7P8PO
60-69 years, male
317.9
GTEX-1J1OQ-0011-R1a-SM-A9G1Z
40-49 years, female
301.9
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y
40-49 years, male
290.4
GTEX-1HT8W-0011-R1b-SM-CJI3V
30-39 years, male
283.8
GTEX-13FTY-0011-R1a-SM-5LZXE
40-49 years, female
280.6
GTEX-1F75W-0011-R1a-SM-ARU81
60-69 years, male
279.1
GTEX-1EKGG-0011-R1b-SM-9QEI1
60-69 years, male
271.1
GTEX-1J8Q2-0011-R1a-SM-D4P2D
60-69 years, male
270.8
GTEX-1GF9V-0011-R1a-SM-CKZNQ
60-69 years, male
265.3
GTEX-1I1GQ-0011-R1a-SM-CY8GG
50-59 years, male
261.6
GTEX-PWO3-0011-R1A-SM-2I5EW
60-69 years, female
252.0
GTEX-1LG7Y-0011-R1a-SM-EYYWV
50-59 years, male
250.6
GTEX-13FHO-0011-R1b-SM-5KLZG
60-69 years, male
249.3
GTEX-14PJO-0011-R1b-SM-6AJAK
60-69 years, male
247.2
GTEX-1C6VR-0011-R1a-SM-7MXUE
60-69 years, male
242.9
GTEX-13O3Q-0011-R1b-SM-5KM3L
50-59 years, male
242.8
GTEX-1A3MX-0011-R1b-SM-7P8PH
60-69 years, male
242.7
GTEX-1C64N-0011-R1b-SM-7P8Q7
50-59 years, male
242.3
GTEX-13SLW-0011-R1a-SM-5S2W7
70-79 years, male
235.3
GTEX-13OW5-0011-R1b-SM-5L3GE
60-69 years, male
234.4
GTEX-1H3VE-0011-R1a-SM-A9G1K
40-49 years, male
231.7
GTEX-TSE9-0011-R1A-SM-3DB7E
60-69 years, female
228.4
GTEX-14LLW-0011-R1a-SM-5ZZVD
70-79 years, female
228.0
GTEX-1EWIQ-0011-R1a-SM-9OSX7
70-79 years, female
221.6
GTEX-1IOXB-0011-R1a-SM-D4P27
50-59 years, male
219.5
GTEX-1GN73-0011-R1a-SM-CKZNT
60-69 years, male
219.2
GTEX-1HGF4-0011-R1a-SM-CJI3S
60-69 years, male
215.8
GTEX-11ZVC-0011-R1b-SM-5BC6M
50-59 years, female
213.6
GTEX-14C5O-0011-R1b-SM-6AJBW
60-69 years, male
213.1
GTEX-1BAJH-0011-R1a-SM-7P8SV
70-79 years, male
212.4
GTEX-15CHQ-0011-R1a-SM-COH27
60-69 years, male
210.6
GTEX-131YS-0011-R1a-SM-5DUXC
60-69 years, female
207.6
GTEX-1GN1U-0011-R1a-SM-CJI25
50-59 years, female
206.8
GTEX-R55E-0011-R1A-SM-2TC6N
20-29 years, male
204.7
GTEX-11DXW-0011-R1a-SM-DNZZD
40-49 years, male
202.7
GTEX-13JVG-0011-R1a-SM-5KM32
60-69 years, male
198.2
GTEX-1H1CY-0011-R1a-SM-CKZOZ
60-69 years, female
194.6
GTEX-X4XX-0011-R1B-SM-3P622
60-69 years, male
193.6
GTEX-1ICLZ-0011-R1b-SM-A9SM3
60-69 years, male
192.0
GTEX-132Q8-0011-R1a-SM-5EGLK
60-69 years, male
191.6
GTEX-13FHP-0011-R1b-SM-5K7XL
50-59 years, male
188.8
GTEX-1IY9M-0011-R1a-SM-EXURZ
60-69 years, male
187.6
GTEX-ZDXO-0011-R1a-SM-4WKF4
60-69 years, male
186.3
GTEX-11GSP-0011-R1a-SM-9QEJ3
60-69 years, female
185.4
GTEX-WVLH-0011-R1A-SM-4MVOK
50-59 years, male
184.5
GTEX-17F97-0011-R1b-SM-7IGM9
50-59 years, male
183.9
GTEX-1A8G6-0011-R1a-SM-7P8PC
60-69 years, male
183.8
GTEX-1A32A-0011-R1a-SM-7P8SQ
50-59 years, female
181.6
GTEX-1F48J-0011-R1a-SM-9QEIC
50-59 years, female
180.2
GTEX-1B933-0011-R1b-SM-9QEGW
50-59 years, female
179.4
GTEX-1CB4J-0011-R1a-SM-9WG64
60-69 years, male
178.3
GTEX-11GS4-0011-R1a-SM-DO129
60-69 years, male
177.4
GTEX-11GSO-0011-R1b-SM-57WD3
60-69 years, male
177.2
GTEX-17HG3-0011-R1a-SM-7LG6H
30-39 years, female
172.3
GTEX-11ONC-0011-R1a-SM-57WD4
60-69 years, male
172.2
GTEX-1LB8K-0011-R1b-SM-EZ6MV
50-59 years, male
168.6
GTEX-11TUW-0011-R1a-SM-DO92S
60-69 years, male
168.3
GTEX-1I1GV-0011-R1a-SM-CL559
60-69 years, male
166.2
GTEX-1IDJH-0011-R1b-SM-ARU6U
70-79 years, male
165.2
GTEX-13PDP-0011-R1a-SM-5PNX5
60-69 years, male
163.8
GTEX-1HSKV-0011-R1b-SM-CMKH7
60-69 years, male
161.9
GTEX-WWYW-0011-R1A-SM-3TW8G
50-59 years, female
161.4
GTEX-144GL-0011-R1a-SM-5PNZ5
50-59 years, male
160.8
GTEX-16Z82-0011-R1b-SM-7EPHZ
60-69 years, male
160.7
GTEX-14PN4-0011-R1b-SM-69LP8
50-59 years, male
160.2
GTEX-1GTWX-0011-R1a-SM-CE6RL
60-69 years, male
157.3
GTEX-13JUV-0011-R1a-SM-5LZY4
40-49 years, female
154.7
GTEX-12WSD-0011-R1b-SM-5LZVY
60-69 years, female
154.1
GTEX-13N2G-0011-R1b-SM-5MR3G
60-69 years, male
152.9
GTEX-131XH-0011-R1a-SM-5DUWA
50-59 years, male
152.3
GTEX-YFC4-0011-R1a-SM-4V6EH
40-49 years, female
152.0
GTEX-1IKK5-0011-R1b-SM-CE6SQ
60-69 years, male
150.8
GTEX-1EH9U-0011-R1b-SM-CJI2B
60-69 years, male
150.5
GTEX-1H1ZS-0011-R1b-SM-A9G1E
70-79 years, male
150.2
GTEX-145MH-0011-R1b-SM-5PNWY
50-59 years, male
148.4
GTEX-ZUA1-0011-R1a-SM-4YCE2
40-49 years, male
147.5
GTEX-QVUS-0011-R1A-SM-3GAD2
60-69 years, female
146.9
GTEX-1399T-0011-R1b-SM-5DUWN
60-69 years, male
146.3
GTEX-QDT8-0011-R1A-SM-32PKS
30-39 years, female
146.3
GTEX-1B8L1-0011-R1a-SM-7P8SS
60-69 years, male
145.6
GTEX-S7SE-0011-R1A-SM-2XCDE
50-59 years, male
143.5
GTEX-12ZZX-0011-R1a-SM-5EQ6B
40-49 years, female
141.5
GTEX-ZF28-0011-R1a-SM-4WWD1
60-69 years, male
140.9
GTEX-11EI6-0011-R1a-SM-DO93L
60-69 years, male
135.4
GTEX-1212Z-0011-R1b-SM-5BC72
60-69 years, male
135.1
GTEX-13CF2-0011-R1a-SM-5LZY1
60-69 years, male
134.0
GTEX-13FXS-0011-R1a-SM-5K7U6
50-59 years, male
132.4
GTEX-1E2YA-0011-R1b-SM-CJI29
50-59 years, male
131.7
GTEX-14JIY-0011-R1a-SM-68713
60-69 years, male
130.4
GTEX-WHSE-0011-R1A-SM-3P5ZK
20-29 years, male
129.5
GTEX-1F6I4-0011-R1a-SM-9OSWU
60-69 years, male
128.8
GTEX-1GF9W-0011-R1a-SM-9QEIQ
60-69 years, male
128.7
GTEX-11ZTS-0011-R1a-SM-5BC71
60-69 years, female
128.4
GTEX-NL3H-0011-R1a-SM-48TDJ
60-69 years, male
128.0
GTEX-14ABY-0011-R1a-SM-6EU2W
50-59 years, male
127.6
GTEX-X4EP-0011-R1A-SM-3P624
60-69 years, female
127.1
GTEX-QVJO-0011-R1A-SM-2S1QI
60-69 years, female
127.0
GTEX-1EMGI-0011-R1b-SM-9OSWZ
60-69 years, male
126.8
GTEX-13NYB-0011-R1b-SM-5KM4F
40-49 years, male
126.1
GTEX-14E6D-0011-R1b-SM-5YYAW
50-59 years, male
126.1
GTEX-1HBPI-0011-R1b-SM-A9SKF
50-59 years, male
125.4
GTEX-XMD1-0011-R1A-SM-4AT4C
60-69 years, male
121.9
GTEX-17HHY-0011-R1a-SM-7189V
50-59 years, male
121.8
GTEX-13FLW-0011-R1b-SM-5LZX2
50-59 years, male
121.0
GTEX-14ASI-0011-R1b-SM-5S2TY
60-69 years, male
118.5
GTEX-16NPV-0011-R1b-SM-7MGVZ
50-59 years, female
118.2
GTEX-1CB4G-0011-R1b-SM-9QEHT
60-69 years, male
115.1
GTEX-13OW6-0011-R1a-SM-5L3HQ
50-59 years, male
114.8
GTEX-14E7W-0011-R1b-SM-5YYAT
70-79 years, male
113.9
GTEX-ZE7O-0011-R1a-SM-57WDM
50-59 years, female
113.7
GTEX-P44H-0011-R1A-SM-3NM8J
40-49 years, male
112.9
GTEX-14PJM-0011-R1a-SM-CNPO3
50-59 years, female
112.4
GTEX-13G51-0011-R1a-SM-5LZYR
60-69 years, male
112.2
GTEX-139TT-0011-R1a-SM-5LZVD
60-69 years, male
110.3
GTEX-ZAB4-0011-R1a-SM-4RGNO
40-49 years, male
110.2
GTEX-13RTJ-0011-R1a-SM-5O9D9
60-69 years, male
109.8
GTEX-UTHO-0011-R1A-SM-3GIJO
60-69 years, male
108.7
GTEX-14BIM-0011-R1a-SM-69LQI
60-69 years, female
108.2
GTEX-1HR98-0011-R1a-SM-ARZLQ
60-69 years, male
108.1
GTEX-1F75A-0011-R1b-SM-CE6RA
50-59 years, male
108.0
GTEX-145LS-0011-R1b-SM-5PNUP
60-69 years, female
104.4
GTEX-NPJ8-0011-R1a-SM-33HCB
40-49 years, male
99.7
GTEX-1F6IF-0011-R1b-SM-9WG78
60-69 years, male
99.3
GTEX-WZTO-0011-R1B-SM-3NMAR
40-49 years, male
98.8
GTEX-N7MT-0011-R1a-SM-CNPO1
60-69 years, female
98.8
GTEX-13QJC-0011-R1b-SM-5S2UU
60-69 years, female
98.4
GTEX-13OVL-0011-R1a-SM-5L3H5
50-59 years, male
98.1
GTEX-12WSE-0011-R1b-SM-5GU4V
20-29 years, male
97.2
GTEX-T5JC-0011-R1A-SM-32PM6
20-29 years, male
96.6
GTEX-Q2AG-0011-R1A-SM-2HMJI
40-49 years, female
94.2
GTEX-QMR6-0011-R1A-SM-32PKW
50-59 years, male
93.2
GTEX-13S7M-0011-R1b-SM-5PNZE
60-69 years, female
93.1
GTEX-16GPK-0011-R1b-SM-7EWDH
60-69 years, male
92.7
GTEX-15DCD-0011-R1b-SM-6LPIJ
70-79 years, female
92.5
GTEX-1B8SF-0011-R1b-SM-7P8Q8
60-69 years, male
92.4
GTEX-13RTL-0011-R1a-SM-5PNZ8
40-49 years, male
91.8
GTEX-NPJ7-0011-R1a-SM-3GACT
60-69 years, female
90.4
GTEX-11UD1-0011-R1b-SM-5BC7D
40-49 years, female
90.1
GTEX-13X6I-0011-R1b-SM-5PNZC
60-69 years, male
89.8
GTEX-1GN2E-0011-R1b-SM-CE6RJ
60-69 years, male
89.1
GTEX-1I1GS-0011-R1a-SM-CJI43
60-69 years, male
88.4
GTEX-16YQH-0011-R1a-SM-7LT8R
30-39 years, male
87.9
GTEX-17HII-0011-R1b-SM-7MGVW
50-59 years, male
87.7
GTEX-1E1VI-0011-R1a-SM-ARZMM
50-59 years, male
87.7
GTEX-13112-0011-R1b-SM-5HL7K
50-59 years, male
87.2
GTEX-12WSH-0011-R1a-SM-5GU5V
50-59 years, male
86.1
GTEX-1I1HK-0011-R1b-SM-CM2T7
60-69 years, male
83.7
GTEX-1AX9I-0011-R1b-SM-7RHG2
60-69 years, male
83.3
GTEX-1EX96-0011-R1a-SM-CE6R5
50-59 years, male
81.7
GTEX-1H1DG-0011-R1b-SM-CKZP1
70-79 years, male
80.7
GTEX-1HSMO-0011-R1a-SM-CM2SV
60-69 years, male
80.3
GTEX-PVOW-0011-R1A-SM-32PL6
40-49 years, male
80.0
GTEX-OHPN-0011-R1A-SM-2I5GB
60-69 years, female
79.8
GTEX-13N1W-0011-R1b-SM-5MR4T
70-79 years, male
79.5
GTEX-12WSM-0011-R1a-SM-5LZW6
60-69 years, male
79.4
GTEX-RNOR-0011-R1A-SM-CNNP5
50-59 years, female
79.0
GTEX-15ER7-0011-R1b-SM-7KUE1
20-29 years, female
77.4
GTEX-18A6Q-0011-R1b-SM-731DI
60-69 years, male
75.4
GTEX-1H3O1-0011-R1b-SM-CL554
60-69 years, male
75.1
GTEX-17EVP-0011-R1a-SM-7DHLA
40-49 years, male
74.4
GTEX-13QIC-0011-R1a-SM-5O9CJ
60-69 years, female
73.7
GTEX-145LU-0011-R1a-SM-5Q5CE
50-59 years, male
73.7
GTEX-139T8-0011-R1a-SM-5HL75
60-69 years, male
73.4
GTEX-13OW7-0011-R1b-SM-5L3HF
50-59 years, male
71.8
GTEX-1C6VQ-0011-R1a-SM-7P8Q2
50-59 years, male
71.4
GTEX-17MF6-0011-R1a-SM-72D6O
40-49 years, male
70.4
GTEX-13O3O-0011-R1b-SM-5KM2K
60-69 years, female
68.9
GTEX-Y8DK-0011-R1A-SM-4RGLO
60-69 years, male
67.8
GTEX-YJ89-0011-R1a-SM-4RGLS
60-69 years, male
64.5
GTEX-12WSF-0011-R1a-SM-5DUVI
70-79 years, male
64.3
GTEX-15UF6-0011-R1a-SM-9QEGH
70-79 years, female
60.6
GTEX-16XZZ-0011-R1a-SM-7LTAH
60-69 years, male
60.3
GTEX-13NZA-0011-R1b-SM-5LUAF
60-69 years, male
58.7
GTEX-N7MS-0011-R1a-SM-2HMJG
60-69 years, male
56.4
GTEX-183WM-0011-R1a-SM-718A8
70-79 years, female
55.7
GTEX-WL46-0011-R1A-SM-3LK6M
50-59 years, male
54.7
GTEX-1313W-0011-R1b-SM-5EQ4A
50-59 years, female
54.3
GTEX-ZVZQ-0011-R1a-SM-57WBU
60-69 years, female
52.9
GTEX-T6MN-0011-R1A-SM-32QOY
50-59 years, male
52.4
GTEX-13NZ8-0011-R1b-SM-5KM3V
60-69 years, female
48.9
GTEX-144GO-0011-R1a-SM-5PNWO
60-69 years, male
47.4
GTEX-17EVQ-0011-R1a-SM-7189S
70-79 years, male
42.7
GTEX-1H4P4-0011-R1b-SM-CL54V
50-59 years, male
42.6
GTEX-1H3NZ-0011-R1a-SM-CKZP5
60-69 years, male
42.2
GTEX-X585-0011-R1B-SM-46MVE
50-59 years, male
40.4
GTEX-1H23P-0011-R1a-SM-ACKVC
60-69 years, male
35.4
GTEX-11WQC-0011-R1b-SM-DO932
60-69 years, male
34.9
GTEX-1GZHY-0011-R1a-SM-CE6RR
50-59 years, female
34.4
GTEX-14LZ3-0011-R1a-SM-69LP5
60-69 years, female
32.5
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
246.6
Mouse sample
Sample description
nTPM
Entorhinal cortex nTPM: 246.6
Samples: 4
Max nTPM: 263.4
Min nTPM: 209.7
Sample A
Male
261.9
Sample B
Male
209.7
Sample C
Female
251.5
Sample D
Female
263.4
Hippocampal formation nTPM: 229.6
Samples: 4
Max nTPM: 244.1
Min nTPM: 221.2
Sample A
Male
221.2
Sample B
Male
223.6
Sample C
Female
244.1
Sample D
Female
229.5
HIPPOCAMPAL FORMATION - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.