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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
17.0
nTPM
HPA Brain:
29.5
nTPM
GTEx:
17.0
nTPM
FANTOM5:
13.3
Scaled Tags Per Million
Pig:
8.3
nTPM
Mouse:
14.0
nTPM
Allen mouse:
2.8
Expression energy
MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
29.5
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 23.6
2586
Male, age 75, left hemisphere
36.5
2828
Female, age 72, unknown
29.2
1830
Male, age 51, unknown
23.7
1827
Male, age 72, unknown
22.9
2666
Male, age 74, left hemisphere
22.8
1870
Female, age 42, unknown
22.7
1833
Male, age 53, unknown
22.1
2411
Female, age 72, unknown
21.6
2219
Male, age 76, both hemispheres
17.2
2019
Male, age 18, unknown
17.1
Dorsal raphe nucleus nTPM: 27.6
2016
Female, age 72, unknown
34.3
2047
Male, age 72, unknown
28.4
2298
Female, age 72, unknown
26.8
1828
Male, age 53, unknown
25.9
2750
Male, age 76, both hemispheres
22.5
Inferior colliculus nTPM: 23.6
1848
Female, age 42, unknown
27.1
2849
Male, age 72, unknown
26.2
1890
Male, age 53, unknown
22.4
2097
Female, age 72, unknown
18.8
Median raphe nucleus nTPM: 21.7
2220
Male, age 76, midline
21.7
Periaquaductal grey, anterior nTPM: 23.2
1795
Male, age 51, unknown
25.1
1947
Male, age 18, unknown
23.1
2502
Female, age 75, unknown
21.4
Periaquaductal grey, dorsal nTPM: 29.5
1840
Male, age 53, unknown
35.4
2850
Male, age 76, both hemispheres
29.3
2464
Female, age 72, unknown
27.7
1831
Male, age 72, unknown
25.6
Periaquaductal grey, lateral nTPM: 29.4
2053
Male, age 18, unknown
32.3
2140
Male, age 76, both hemispheres
28.8
2272
Male, age 74, both hemispheres
27.0
Pretectal area nTPM: 22.6
2273
Male, age 74, both hemispheres
29.3
2825
Male, age 18, unknown
28.5
2407
Male, age 75, both hemispheres
26.6
2316
Male, age 76, right hemisphere
24.2
2667
Female, age 75, unknown
24.2
2224
Female, age 72, unknown
21.8
1815
Male, age 53, unknown
21.6
1944
Female, age 72, unknown
21.6
1817
Female, age 42, unknown
17.6
1816
Male, age 51, unknown
17.1
2007
Male, age 72, unknown
16.1
Red nucleus nTPM: 22.6
2823
Male, age 76, right hemisphere
26.5
2725
Female, age 75, unknown
24.8
1865
Male, age 51, unknown
24.7
2769
Male, age 72, unknown
24.1
1904
Male, age 53, unknown
23.3
2584
Male, age 75, left hemisphere
22.6
2227
Male, age 72, unknown
22.4
2503
Female, age 72, unknown
21.9
2588
Male, age 74, left hemisphere
21.5
1821
Female, age 72, unknown
21.4
1954
Female, age 42, unknown
21.0
2785
Male, age 18, unknown
17.0
Substantia nigra nTPM: 22.6
2699
Male, age 18, unknown
30.4
1916
Female, age 42, unknown
25.7
1851
Male, age 51, unknown
23.6
2583
Male, age 75, right hemisphere
23.5
2590
Female, age 75, unknown
23.2
2241
Male, age 72, unknown
22.5
2409
Female, age 72, unknown
22.2
2665
Male, age 74, both hemispheres
21.6
1889
Female, age 72, unknown
16.6
1941
Male, age 53, unknown
16.6
Superior colliculus nTPM: 24.7
2664
Male, age 75, both hemispheres
33.3
1995
Male, age 72, unknown
30.8
1913
Female, age 42, unknown
26.3
1796
Male, age 53, unknown
25.2
1839
Male, age 51, unknown
24.1
2587
Male, age 74, left hemisphere
23.2
2261
Male, age 18, unknown
22.4
2087
Female, age 72, unknown
22.1
2668
Female, age 75, unknown
21.1
1895
Male, age 76, right hemisphere
18.9
Ventral tegmental area nTPM: 22.6
2021
Male, age 53, unknown
27.6
1915
Female, age 42, unknown
25.0
1942
Male, age 51, unknown
22.8
2410
Female, age 72, unknown
21.5
2218
Male, age 76, both hemispheres
21.0
2223
Female, age 72, unknown
18.0
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
17.0
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 17.0
Samples: 139
Max nTPM: 40.8
Min nTPM: 3.4
Std nTPM: 6.2
Median nTPM: 16.0
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
40.8
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
34.6
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
34.4
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
34.4
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
34.4
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
33.6
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
33.5
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
31.7
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
29.7
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
29.6
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
25.8
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
25.4
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
25.1
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
24.9
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
24.5
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
23.7
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
23.6
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
23.3
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
23.1
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
23.0
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
21.7
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
20.9
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
20.8
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
20.5
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
20.5
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
20.2
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
20.0
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
19.8
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
19.8
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
19.8
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
19.7
GTEX-NPJ8-0011-R2a-SM-2TC6M
40-49 years, male
19.7
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
19.6
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
19.5
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
19.5
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
19.3
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
19.2
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
19.1
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
19.1
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
18.9
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
18.8
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
18.7
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
18.6
GTEX-PWO3-0011-R2A-SM-2S1OX
60-69 years, female
18.3
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
18.2
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
18.0
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
17.8
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
17.8
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
17.8
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
17.7
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
17.5
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
17.5
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
17.4
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
17.3
GTEX-NL4W-0011-R2a-SM-2I5GV
50-59 years, male
17.3
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
17.3
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
17.2
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
17.1
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
17.1
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
16.9
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
16.8
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
16.7
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
16.6
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
16.5
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
16.5
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
16.4
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
16.3
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
16.3
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
16.1
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
16.0
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
15.9
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
15.9
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
15.8
GTEX-18464-0011-R2a-SM-731AL
50-59 years, male
15.8
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
15.6
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
15.5
GTEX-1IKOH-0011-R2a-SM-CMKHO
60-69 years, female
15.5
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
15.4
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
15.4
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
15.3
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
15.3
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
15.1
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
14.9
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
14.8
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
14.7
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
14.6
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
14.4
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
14.4
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
14.2
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
14.1
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
14.1
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
14.1
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
14.0
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
13.9
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
13.9
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
13.9
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
13.8
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
13.7
GTEX-T5JC-0011-R2A-SM-32PLZ
20-29 years, male
13.7
GTEX-P44G-0011-R2A-SM-2XCD2
30-39 years, male
13.5
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
13.5
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
13.1
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
13.1
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
13.1
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
13.1
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
12.8
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
12.8
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
12.6
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
12.6
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
12.5
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
12.5
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
12.4
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
12.4
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
12.4
GTEX-OXRO-0011-R2A-SM-3NB1W
60-69 years, female
11.9
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
11.8
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
11.8
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
11.8
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
11.8
GTEX-N7MT-0011-R2a-SM-2I3GI
60-69 years, female
11.5
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
11.4
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
11.3
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
11.1
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
10.7
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
10.7
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
10.6
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
10.4
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
10.3
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
10.0
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
9.4
GTEX-N7MS-0011-R2a-SM-2HML6
60-69 years, male
8.8
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
8.7
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
8.7
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
8.4
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
8.2
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
7.7
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
7.4
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
6.3
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
3.4
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MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
14.0
Mouse sample
Sample description
nTPM
Midbrain nTPM: 14.0
Samples: 4
Max nTPM: 14.9
Min nTPM: 12.1
Sample A
Male
14.9
Sample B
Male
14.7
Sample C
Female
12.1
Sample D
Female
14.1
MIDBRAIN - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.