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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
12.5
nTPM
HPA Brain:
107.1
nTPM
GTEx:
12.5
nTPM
FANTOM5:
5.8
Scaled Tags Per Million
Pig:
99.9
nTPM
Mouse:
128.1
nTPM
Allen mouse:
13.3
Expression energy
MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
107.1
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 41.6
1833
Male, age 53, unknown
64.9
2019
Male, age 18, unknown
63.6
1827
Male, age 72, unknown
57.6
1870
Female, age 42, unknown
42.4
1830
Male, age 51, unknown
41.1
2411
Female, age 72, unknown
38.7
2219
Male, age 76, both hemispheres
35.8
2586
Male, age 75, left hemisphere
31.1
2828
Female, age 72, unknown
29.1
2666
Male, age 74, left hemisphere
11.9
Dorsal raphe nucleus nTPM: 30.4
2298
Female, age 72, unknown
45.1
1828
Male, age 53, unknown
33.1
2750
Male, age 76, both hemispheres
28.8
2016
Female, age 72, unknown
26.6
2047
Male, age 72, unknown
18.3
Inferior colliculus nTPM: 107.1
2097
Female, age 72, unknown
144.8
1890
Male, age 53, unknown
109.9
1848
Female, age 42, unknown
107.6
2849
Male, age 72, unknown
66.3
Median raphe nucleus nTPM: 13.0
2220
Male, age 76, midline
13.0
Periaquaductal grey, anterior nTPM: 36.1
2502
Female, age 75, unknown
73.1
1795
Male, age 51, unknown
17.7
1947
Male, age 18, unknown
17.5
Periaquaductal grey, dorsal nTPM: 30.8
2464
Female, age 72, unknown
40.2
1840
Male, age 53, unknown
34.2
2850
Male, age 76, both hemispheres
29.1
1831
Male, age 72, unknown
19.7
Periaquaductal grey, lateral nTPM: 24.4
2140
Male, age 76, both hemispheres
30.6
2053
Male, age 18, unknown
23.0
2272
Male, age 74, both hemispheres
19.7
Pretectal area nTPM: 50.4
1816
Male, age 51, unknown
85.5
2316
Male, age 76, right hemisphere
78.3
1817
Female, age 42, unknown
68.9
2007
Male, age 72, unknown
57.8
2224
Female, age 72, unknown
50.3
1944
Female, age 72, unknown
49.7
1815
Male, age 53, unknown
45.4
2667
Female, age 75, unknown
41.4
2407
Male, age 75, both hemispheres
36.1
2825
Male, age 18, unknown
21.2
2273
Male, age 74, both hemispheres
20.1
Red nucleus nTPM: 37.5
2785
Male, age 18, unknown
62.8
2584
Male, age 75, left hemisphere
48.4
2503
Female, age 72, unknown
46.9
1954
Female, age 42, unknown
43.5
2227
Male, age 72, unknown
42.2
2769
Male, age 72, unknown
41.4
2823
Male, age 76, right hemisphere
35.3
1904
Male, age 53, unknown
31.2
2588
Male, age 74, left hemisphere
29.0
1821
Female, age 72, unknown
28.5
1865
Male, age 51, unknown
24.1
2725
Female, age 75, unknown
16.4
Substantia nigra nTPM: 27.6
1889
Female, age 72, unknown
55.4
2241
Male, age 72, unknown
45.7
2590
Female, age 75, unknown
29.3
1916
Female, age 42, unknown
27.9
2583
Male, age 75, right hemisphere
26.2
2409
Female, age 72, unknown
21.2
2699
Male, age 18, unknown
20.8
2665
Male, age 74, both hemispheres
18.8
1851
Male, age 51, unknown
18.3
1941
Male, age 53, unknown
12.9
Superior colliculus nTPM: 53.1
2087
Female, age 72, unknown
84.0
1895
Male, age 76, right hemisphere
83.0
2261
Male, age 18, unknown
74.4
1796
Male, age 53, unknown
61.2
1839
Male, age 51, unknown
45.5
2668
Female, age 75, unknown
39.9
1995
Male, age 72, unknown
39.3
2664
Male, age 75, both hemispheres
35.7
1913
Female, age 42, unknown
34.5
2587
Male, age 74, left hemisphere
33.8
Ventral tegmental area nTPM: 35.4
1942
Male, age 51, unknown
57.5
2218
Male, age 76, both hemispheres
51.6
2410
Female, age 72, unknown
31.0
1915
Female, age 42, unknown
26.1
2021
Male, age 53, unknown
25.0
2223
Female, age 72, unknown
21.0
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
12.5
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 12.5
Samples: 139
Max nTPM: 156.0
Min nTPM: 0.2
Std nTPM: 17.3
Median nTPM: 6.9
GTEX-N7MS-0011-R2a-SM-2HML6
60-69 years, male
156.0
GTEX-P44G-0011-R2A-SM-2XCD2
30-39 years, male
71.3
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
50.4
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
47.6
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
43.7
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
42.2
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
41.0
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
38.2
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
37.3
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
37.0
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
36.7
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
35.7
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
34.5
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
30.6
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
30.1
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
29.1
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
29.0
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
28.4
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
28.3
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
26.5
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
25.5
GTEX-T5JC-0011-R2A-SM-32PLZ
20-29 years, male
24.2
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
23.9
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
22.6
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
19.8
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
19.6
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
19.6
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
17.9
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
17.2
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
16.8
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
16.8
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
16.8
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
16.1
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
15.9
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
15.6
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
15.1
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
14.9
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
13.7
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
13.5
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
13.4
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
13.3
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
12.9
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
12.6
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
11.9
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
11.1
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
10.3
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
10.2
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
9.4
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
9.4
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
9.2
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
9.2
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
9.0
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
8.9
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
8.8
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
8.8
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
8.3
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
8.1
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
8.0
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
7.8
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
7.7
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
7.6
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
7.5
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
7.4
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
7.4
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
7.3
GTEX-NL4W-0011-R2a-SM-2I5GV
50-59 years, male
7.3
GTEX-OXRO-0011-R2A-SM-3NB1W
60-69 years, female
7.3
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
7.0
GTEX-18464-0011-R2a-SM-731AL
50-59 years, male
6.9
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
6.9
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
6.8
GTEX-NPJ8-0011-R2a-SM-2TC6M
40-49 years, male
6.5
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
6.4
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
6.3
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
6.2
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
5.9
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
5.9
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
5.7
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
5.4
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
5.4
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
5.4
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
5.2
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
5.1
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
4.8
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
4.8
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
4.8
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
4.5
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
4.5
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
4.2
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
4.2
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
4.1
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
4.0
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
4.0
GTEX-N7MT-0011-R2a-SM-2I3GI
60-69 years, female
4.0
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
4.0
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
3.9
GTEX-PWO3-0011-R2A-SM-2S1OX
60-69 years, female
3.8
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
3.7
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
3.6
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
3.6
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
3.6
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
3.5
GTEX-1IKOH-0011-R2a-SM-CMKHO
60-69 years, female
3.5
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
3.3
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
3.3
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
3.3
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
3.2
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
3.2
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
3.1
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
3.1
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
3.1
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
3.0
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
2.9
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
2.8
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
2.7
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
2.7
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
2.6
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
2.6
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
2.6
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
2.6
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
2.5
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
2.4
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
2.4
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
2.2
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
2.1
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
2.1
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
1.9
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
1.9
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
1.8
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
1.8
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
1.7
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
1.6
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
1.4
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
1.2
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
0.8
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
0.8
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
0.5
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
0.5
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
0.2
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MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
128.1
Mouse sample
Sample description
nTPM
Midbrain nTPM: 128.1
Samples: 4
Max nTPM: 137.8
Min nTPM: 123.3
Sample A
Male
123.9
Sample B
Male
123.3
Sample C
Female
137.8
Sample D
Female
127.4
MIDBRAIN - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.