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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
19.4
nTPM
HPA Brain:
56.2
nTPM
GTEx:
19.4
nTPM
FANTOM5:
48.0
Scaled Tags Per Million
Pig:
97.1
nTPM
Mouse:
100.3
nTPM
Allen mouse:
11.6
Expression energy
HIPPOCAMPUS - Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
56.2
Sample id
Sample description
nTPM
Hippocampus nTPM: 34.7
1911
Female, age 85, right hemisphere
40.7
2148
Female, age 91, left hemisphere
40.7
2529
Female, age 94, left hemisphere
40.0
2621
Female, age 67, right hemisphere
36.3
1898
Male, age 80, left hemisphere
28.5
1855
Male, age 76, left hemisphere
21.8
Dentate gyrus nTPM: 41.4
2531
Female, age 67, both hemispheres
73.0
1927
Female, age 91, both hemispheres
53.2
2528
Male, age 74, both hemispheres
37.4
2246
Female, age 85, both hemispheres
36.4
2010
Male, age 76, both hemispheres
34.1
2530
Female, age 94, left hemisphere
14.3
Entorhinal gyrus nTPM: 39.6
1787
Male, age 76, left hemisphere
64.3
2764
Male, age 80, right hemisphere
42.7
2686
Male, age 75, right hemisphere
38.3
1938
Female, age 85, left hemisphere
36.9
2613
Female, age 94, left hemisphere
35.4
2117
Female, age 91, right hemisphere
19.9
Hippocampus, CA1 nTPM: 34.1
2045
Male, age 76, both hemispheres
44.2
2749
Male, age 80, left hemisphere
37.9
1873
Female, age 85, both hemispheres
35.3
2527
Male, age 74, both hemispheres
31.1
2082
Female, age 91, right hemisphere
21.9
Hippocampus, CA2 nTPM: 26.7
1892
Male, age 76, both hemispheres
52.7
2437
Female, age 94, left hemisphere
34.2
1963
Male, age 80, left hemisphere
22.4
2113
Female, age 91, right hemisphere
21.0
1940
Female, age 85, left hemisphere
15.9
2249
Male, age 74, both hemispheres
14.3
Hippocampus, CA3 nTPM: 49.2
2620
Female, age 94, left hemisphere
76.2
1867
Male, age 76, both hemispheres
72.3
1891
Female, age 85, both hemispheres
43.1
2861
Female, age 67, both hemispheres
40.2
2137
Male, age 80, left hemisphere
36.8
2436
Male, age 74, both hemispheres
26.7
Parahippocampal cortex nTPM: 46.2
2250
Female, age 67, right hemisphere
77.6
2693
Female, age 94, both hemispheres
56.1
1990
Female, age 91, right hemisphere
51.7
2018
Male, age 76, both hemispheres
50.2
2245
Female, age 91, both hemispheres
48.4
1933
Female, age 85, both hemispheres
41.4
2532
Female, age 72, left hemisphere
38.8
1850
Male, age 80, both hemispheres
37.6
2622
Female, age 67, right hemisphere
30.5
2692
Male, age 74, both hemispheres
29.8
Perirhinal gyrus nTPM: 56.2
2521
Female, age 94, right hemisphere
63.8
2848
Male, age 76, right hemisphere
60.2
1794
Male, age 80, right hemisphere
59.5
1847
Female, age 91, left hemisphere
56.4
1841
Female, age 85, right hemisphere
41.0
Subiculum nTPM: 32.9
2619
Male, age 74, both hemispheres
50.5
1977
Female, age 85, both hemispheres
43.2
2729
Female, age 91, right hemisphere
28.8
2042
Male, age 76, both hemispheres
28.4
1901
Male, age 80, both hemispheres
27.6
2438
Female, age 94, left hemisphere
18.7
HIPPOCAMPAL FORMATION - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
19.4
GTEx sample id
Sample description
nTPM
Brain - Hippocampus Average nTPM: 19.4
Samples: 197
Max nTPM: 126.9
Min nTPM: 0.4
Std nTPM: 18.7
Median nTPM: 14.3
GTEX-RNOR-0011-R1A-SM-CNNP5
50-59 years, female
126.9
GTEX-145MH-0011-R1b-SM-5PNWY
50-59 years, male
101.7
GTEX-R55E-0011-R1A-SM-2TC6N
20-29 years, male
80.3
GTEX-14ABY-0011-R1a-SM-6EU2W
50-59 years, male
76.4
GTEX-16YQH-0011-R1a-SM-7LT8R
30-39 years, male
65.7
GTEX-PVOW-0011-R1A-SM-32PL6
40-49 years, male
63.6
GTEX-13OW6-0011-R1a-SM-5L3HQ
50-59 years, male
59.1
GTEX-WL46-0011-R1A-SM-3LK6M
50-59 years, male
55.3
GTEX-1HT8W-0011-R1b-SM-CJI3V
30-39 years, male
54.5
GTEX-131YS-0011-R1a-SM-5DUXC
60-69 years, female
53.2
GTEX-WWYW-0011-R1A-SM-3TW8G
50-59 years, female
52.7
GTEX-14JIY-0011-R1a-SM-68713
60-69 years, male
52.0
GTEX-1CB4G-0011-R1b-SM-9QEHT
60-69 years, male
49.8
GTEX-13O3Q-0011-R1b-SM-5KM3L
50-59 years, male
48.3
GTEX-13FLW-0011-R1b-SM-5LZX2
50-59 years, male
45.9
GTEX-1B8L1-0011-R1a-SM-7P8SS
60-69 years, male
45.8
GTEX-P44G-0011-R1A-SM-2I3FE
30-39 years, male
44.6
GTEX-WZTO-0011-R1B-SM-3NMAR
40-49 years, male
44.3
GTEX-1313W-0011-R1b-SM-5EQ4A
50-59 years, female
43.4
GTEX-ZAB4-0011-R1a-SM-4RGNO
40-49 years, male
43.1
GTEX-1GN73-0011-R1a-SM-CKZNT
60-69 years, male
42.5
GTEX-ZUA1-0011-R1a-SM-4YCE2
40-49 years, male
41.6
GTEX-1IY9M-0011-R1a-SM-EXURZ
60-69 years, male
40.7
GTEX-T5JC-0011-R1A-SM-32PM6
20-29 years, male
40.5
GTEX-X585-0011-R1B-SM-46MVE
50-59 years, male
40.2
GTEX-1F75A-0011-R1b-SM-CE6RA
50-59 years, male
39.9
GTEX-TSE9-0011-R1A-SM-3DB7E
60-69 years, female
38.3
GTEX-12WSD-0011-R1b-SM-5LZVY
60-69 years, female
37.3
GTEX-ZDXO-0011-R1a-SM-4WKF4
60-69 years, male
37.3
GTEX-15CHQ-0011-R1a-SM-COH27
60-69 years, male
37.1
GTEX-13NYB-0011-R1b-SM-5KM4F
40-49 years, male
36.6
GTEX-Q2AG-0011-R1A-SM-2HMJI
40-49 years, female
34.5
GTEX-11GS4-0011-R1a-SM-DO129
60-69 years, male
33.9
GTEX-1399T-0011-R1b-SM-5DUWN
60-69 years, male
33.8
GTEX-17HG3-0011-R1a-SM-7LG6H
30-39 years, female
33.7
GTEX-1IDJH-0011-R1b-SM-ARU6U
70-79 years, male
32.6
GTEX-1ICLZ-0011-R1b-SM-A9SM3
60-69 years, male
32.2
GTEX-Y8DK-0011-R1A-SM-4RGLO
60-69 years, male
31.9
GTEX-11GSP-0011-R1a-SM-9QEJ3
60-69 years, female
31.9
GTEX-11ONC-0011-R1a-SM-57WD4
60-69 years, male
31.8
GTEX-14C5O-0011-R1b-SM-6AJBW
60-69 years, male
31.3
GTEX-131XH-0011-R1a-SM-5DUWA
50-59 years, male
30.9
GTEX-QDT8-0011-R1A-SM-32PKS
30-39 years, female
30.3
GTEX-NL3H-0011-R1a-SM-48TDJ
60-69 years, male
30.1
GTEX-1EMGI-0011-R1b-SM-9OSWZ
60-69 years, male
30.1
GTEX-145LS-0011-R1b-SM-5PNUP
60-69 years, female
29.8
GTEX-1EWIQ-0011-R1a-SM-9OSX7
70-79 years, female
29.6
GTEX-1F6IF-0011-R1b-SM-9WG78
60-69 years, male
29.0
GTEX-12WSH-0011-R1a-SM-5GU5V
50-59 years, male
28.7
GTEX-YFC4-0011-R1a-SM-4V6EH
40-49 years, female
28.2
GTEX-12WSF-0011-R1a-SM-5DUVI
70-79 years, male
28.0
GTEX-14PN4-0011-R1b-SM-69LP8
50-59 years, male
27.6
GTEX-11DXW-0011-R1a-SM-DNZZD
40-49 years, male
27.4
GTEX-WVLH-0011-R1A-SM-4MVOK
50-59 years, male
27.2
GTEX-1H3O1-0011-R1b-SM-CL554
60-69 years, male
27.2
GTEX-WHSE-0011-R1A-SM-3P5ZK
20-29 years, male
26.5
GTEX-X4XX-0011-R1B-SM-3P622
60-69 years, male
26.0
GTEX-1H1ZS-0011-R1b-SM-A9G1E
70-79 years, male
25.6
GTEX-T6MN-0011-R1A-SM-32QOY
50-59 years, male
25.3
GTEX-13N2G-0011-R1b-SM-5MR3G
60-69 years, male
24.8
GTEX-N7MS-0011-R1a-SM-2HMJG
60-69 years, male
23.9
GTEX-12WSE-0011-R1b-SM-5GU4V
20-29 years, male
23.2
GTEX-139TT-0011-R1a-SM-5LZVD
60-69 years, male
22.4
GTEX-1F6I4-0011-R1a-SM-9OSWU
60-69 years, male
22.0
GTEX-1I1GQ-0011-R1a-SM-CY8GG
50-59 years, male
22.0
GTEX-1B933-0011-R1b-SM-9QEGW
50-59 years, female
21.7
GTEX-1J1OQ-0011-R1a-SM-A9G1Z
40-49 years, female
21.2
GTEX-17F97-0011-R1b-SM-7IGM9
50-59 years, male
21.1
GTEX-16Z82-0011-R1b-SM-7EPHZ
60-69 years, male
20.9
GTEX-S7SE-0011-R1A-SM-2XCDE
50-59 years, male
20.7
GTEX-11GSO-0011-R1b-SM-57WD3
60-69 years, male
19.8
GTEX-1LG7Y-0011-R1a-SM-EYYWV
50-59 years, male
19.6
GTEX-15ER7-0011-R1b-SM-7KUE1
20-29 years, female
19.4
GTEX-1H3NZ-0011-R1a-SM-CKZP5
60-69 years, male
19.2
GTEX-13X6I-0011-R1b-SM-5PNZC
60-69 years, male
19.1
GTEX-1EX96-0011-R1a-SM-CE6R5
50-59 years, male
18.5
GTEX-14E7W-0011-R1b-SM-5YYAT
70-79 years, male
18.4
GTEX-1A3MX-0011-R1b-SM-7P8PH
60-69 years, male
17.9
GTEX-1H1CY-0011-R1a-SM-CKZOZ
60-69 years, female
17.8
GTEX-1AX9I-0011-R1b-SM-7RHG2
60-69 years, male
17.7
GTEX-QVJO-0011-R1A-SM-2S1QI
60-69 years, female
17.4
GTEX-14BIM-0011-R1a-SM-69LQI
60-69 years, female
17.2
GTEX-YJ89-0011-R1a-SM-4RGLS
60-69 years, male
17.1
GTEX-14PJM-0011-R1a-SM-CNPO3
50-59 years, female
16.7
GTEX-P44H-0011-R1A-SM-3NM8J
40-49 years, male
16.6
GTEX-14E6D-0011-R1b-SM-5YYAW
50-59 years, male
16.2
GTEX-1I1GS-0011-R1a-SM-CJI43
60-69 years, male
16.2
GTEX-N7MT-0011-R1a-SM-CNPO1
60-69 years, female
16.2
GTEX-1B8SF-0011-R1b-SM-7P8Q8
60-69 years, male
16.1
GTEX-NPJ7-0011-R1a-SM-3GACT
60-69 years, female
15.9
GTEX-1IOXB-0011-R1a-SM-D4P27
50-59 years, male
15.9
GTEX-13G51-0011-R1a-SM-5LZYR
60-69 years, male
15.6
GTEX-14ASI-0011-R1b-SM-5S2TY
60-69 years, male
15.5
GTEX-1HGF4-0011-R1a-SM-CJI3S
60-69 years, male
15.5
GTEX-PWO3-0011-R1A-SM-2I5EW
60-69 years, female
15.3
GTEX-1IKK5-0011-R1b-SM-CE6SQ
60-69 years, male
15.3
GTEX-132Q8-0011-R1a-SM-5EGLK
60-69 years, male
15.1
GTEX-13OW8-0011-R1a-SM-5L3HI
60-69 years, male
14.4
GTEX-13JUV-0011-R1a-SM-5LZY4
40-49 years, female
14.3
GTEX-13N1W-0011-R1b-SM-5MR4T
70-79 years, male
14.1
GTEX-15DCD-0011-R1b-SM-6LPIJ
70-79 years, female
14.1
GTEX-13FXS-0011-R1a-SM-5K7U6
50-59 years, male
13.7
GTEX-139T8-0011-R1a-SM-5HL75
60-69 years, male
13.6
GTEX-1HBPI-0011-R1b-SM-A9SKF
50-59 years, male
13.6
GTEX-1HSKV-0011-R1b-SM-CMKH7
60-69 years, male
13.3
GTEX-13O3O-0011-R1b-SM-5KM2K
60-69 years, female
13.2
GTEX-QMR6-0011-R1A-SM-32PKW
50-59 years, male
12.8
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y
40-49 years, male
12.7
GTEX-13S7M-0011-R1b-SM-5PNZE
60-69 years, female
12.4
GTEX-14PQA-0011-R1b-SM-6EU1G
50-59 years, female
12.3
GTEX-17JCI-0011-R1b-SM-718A3
60-69 years, female
11.9
GTEX-13FHO-0011-R1b-SM-5KLZG
60-69 years, male
11.3
GTEX-1BAJH-0011-R1a-SM-7P8SV
70-79 years, male
11.2
GTEX-13OW7-0011-R1b-SM-5L3HF
50-59 years, male
11.0
GTEX-1GF9V-0011-R1a-SM-CKZNQ
60-69 years, male
10.7
GTEX-13112-0011-R1b-SM-5HL7K
50-59 years, male
10.6
GTEX-1F48J-0011-R1a-SM-9QEIC
50-59 years, female
10.6
GTEX-QVUS-0011-R1A-SM-3GAD2
60-69 years, female
10.4
GTEX-1F75W-0011-R1a-SM-ARU81
60-69 years, male
10.4
GTEX-1EKGG-0011-R1b-SM-9QEI1
60-69 years, male
10.2
GTEX-1I1HK-0011-R1b-SM-CM2T7
60-69 years, male
9.5
GTEX-14PJO-0011-R1b-SM-6AJAK
60-69 years, male
9.4
GTEX-16NPV-0011-R1b-SM-7MGVZ
50-59 years, female
9.3
GTEX-12WSM-0011-R1a-SM-5LZW6
60-69 years, male
9.2
GTEX-OHPN-0011-R1A-SM-2I5GB
60-69 years, female
9.2
GTEX-ZVZQ-0011-R1a-SM-57WBU
60-69 years, female
9.1
GTEX-1GF9W-0011-R1a-SM-9QEIQ
60-69 years, male
8.7
GTEX-1GMR8-0011-R1b-SM-CJI2O
50-59 years, female
8.5
GTEX-13CF2-0011-R1a-SM-5LZY1
60-69 years, male
8.4
GTEX-17EVP-0011-R1a-SM-7DHLA
40-49 years, male
8.4
GTEX-13NYS-0011-R1b-SM-5MR55
60-69 years, male
8.3
GTEX-12ZZX-0011-R1a-SM-5EQ6B
40-49 years, female
8.2
GTEX-UTHO-0011-R1A-SM-3GIJO
60-69 years, male
8.1
GTEX-X4EP-0011-R1A-SM-3P624
60-69 years, female
7.5
GTEX-16XZZ-0011-R1a-SM-7LTAH
60-69 years, male
7.3
GTEX-11EI6-0011-R1a-SM-DO93L
60-69 years, male
7.2
GTEX-1A32A-0011-R1a-SM-7P8SQ
50-59 years, female
7.1
GTEX-13FHP-0011-R1b-SM-5K7XL
50-59 years, male
7.0
GTEX-XMD1-0011-R1A-SM-4AT4C
60-69 years, male
6.7
GTEX-1E2YA-0011-R1b-SM-CJI29
50-59 years, male
6.7
GTEX-1GTWX-0011-R1a-SM-CE6RL
60-69 years, male
6.6
GTEX-13OVL-0011-R1a-SM-5L3H5
50-59 years, male
6.4
GTEX-16GPK-0011-R1b-SM-7EWDH
60-69 years, male
6.0
GTEX-1C6VR-0011-R1a-SM-7MXUE
60-69 years, male
6.0
GTEX-1H1DG-0011-R1b-SM-CKZP1
70-79 years, male
6.0
GTEX-13RTJ-0011-R1a-SM-5O9D9
60-69 years, male
5.8
GTEX-13QJC-0011-R1b-SM-5S2UU
60-69 years, female
5.6
GTEX-1E1VI-0011-R1a-SM-ARZMM
50-59 years, male
5.6
GTEX-ZE7O-0011-R1a-SM-57WDM
50-59 years, female
5.5
GTEX-14LLW-0011-R1a-SM-5ZZVD
70-79 years, female
5.4
GTEX-11ZTS-0011-R1a-SM-5BC71
60-69 years, female
5.2
GTEX-1B996-0011-R1b-SM-7P8PO
60-69 years, male
4.8
GTEX-1I1GV-0011-R1a-SM-CL559
60-69 years, male
4.8
GTEX-17HHY-0011-R1a-SM-7189V
50-59 years, male
4.7
GTEX-ZF28-0011-R1a-SM-4WWD1
60-69 years, male
4.7
GTEX-13NZ8-0011-R1b-SM-5KM3V
60-69 years, female
4.5
GTEX-NPJ8-0011-R1a-SM-33HCB
40-49 years, male
4.5
GTEX-13SLW-0011-R1a-SM-5S2W7
70-79 years, male
4.1
GTEX-17EVQ-0011-R1a-SM-7189S
70-79 years, male
3.9
GTEX-13OVJ-0011-R1b-SM-5L3I6
50-59 years, female
3.8
GTEX-1A8G6-0011-R1a-SM-7P8PC
60-69 years, male
3.8
GTEX-1HR98-0011-R1a-SM-ARZLQ
60-69 years, male
3.8
GTEX-145LU-0011-R1a-SM-5Q5CE
50-59 years, male
3.4
GTEX-144GL-0011-R1a-SM-5PNZ5
50-59 years, male
3.3
GTEX-1H3VE-0011-R1a-SM-A9G1K
40-49 years, male
3.3
GTEX-1HSMO-0011-R1a-SM-CM2SV
60-69 years, male
3.3
GTEX-11UD1-0011-R1b-SM-5BC7D
40-49 years, female
3.2
GTEX-13QIC-0011-R1a-SM-5O9CJ
60-69 years, female
3.2
GTEX-11ZVC-0011-R1b-SM-5BC6M
50-59 years, female
3.1
GTEX-13FTY-0011-R1a-SM-5LZXE
40-49 years, female
3.1
GTEX-17HII-0011-R1b-SM-7MGVW
50-59 years, male
3.1
GTEX-1EH9U-0011-R1b-SM-CJI2B
60-69 years, male
3.1
GTEX-1GN1U-0011-R1a-SM-CJI25
50-59 years, female
3.1
GTEX-1H4P4-0011-R1b-SM-CL54V
50-59 years, male
3.1
GTEX-17MF6-0011-R1a-SM-72D6O
40-49 years, male
2.9
GTEX-14LZ3-0011-R1a-SM-69LP5
60-69 years, female
2.8
GTEX-1GZHY-0011-R1a-SM-CE6RR
50-59 years, female
2.7
GTEX-1CAV2-0011-R1a-SM-ARZML
40-49 years, female
2.5
GTEX-13OW5-0011-R1b-SM-5L3GE
60-69 years, male
2.3
GTEX-13PDP-0011-R1a-SM-5PNX5
60-69 years, male
2.2
GTEX-1GN2E-0011-R1b-SM-CE6RJ
60-69 years, male
2.2
GTEX-13RTL-0011-R1a-SM-5PNZ8
40-49 years, male
2.1
GTEX-13JVG-0011-R1a-SM-5KM32
60-69 years, male
2.0
GTEX-11WQC-0011-R1b-SM-DO932
60-69 years, male
2.0
GTEX-13NZA-0011-R1b-SM-5LUAF
60-69 years, male
1.9
GTEX-15UF6-0011-R1a-SM-9QEGH
70-79 years, female
1.9
GTEX-1J8Q2-0011-R1a-SM-D4P2D
60-69 years, male
1.8
GTEX-183WM-0011-R1a-SM-718A8
70-79 years, female
1.6
GTEX-1LB8K-0011-R1b-SM-EZ6MV
50-59 years, male
1.6
GTEX-1C64N-0011-R1b-SM-7P8Q7
50-59 years, male
1.3
GTEX-1212Z-0011-R1b-SM-5BC72
60-69 years, male
1.2
GTEX-144GO-0011-R1a-SM-5PNWO
60-69 years, male
1.2
GTEX-1C6VQ-0011-R1a-SM-7P8Q2
50-59 years, male
1.1
GTEX-11TUW-0011-R1a-SM-DO92S
60-69 years, male
1.0
GTEX-18A6Q-0011-R1b-SM-731DI
60-69 years, male
0.7
GTEX-1H23P-0011-R1a-SM-ACKVC
60-69 years, male
0.5
GTEX-1CB4J-0011-R1a-SM-9WG64
60-69 years, male
0.4
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
100.3
Mouse sample
Sample description
nTPM
Entorhinal cortex nTPM: 100.3
Samples: 4
Max nTPM: 109.6
Min nTPM: 92.4
Sample A
Male
92.4
Sample B
Male
109.6
Sample C
Female
97.9
Sample D
Female
101.1
Hippocampal formation nTPM: 91.9
Samples: 4
Max nTPM: 103.9
Min nTPM: 78.7
Sample A
Male
81.5
Sample B
Male
103.9
Sample C
Female
78.7
Sample D
Female
103.6
HIPPOCAMPAL FORMATION - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.