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A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
57.4
Sample id
Sample description
nTPM
Amygdala nTPM: 46.6
2695
Female, age 67, right hemisphere
60.6
1987
Female, age 91, left hemisphere
58.7
2517
Female, age 94, left hemisphere
42.2
2814
Male, age 76, right hemisphere
42.1
2514
Male, age 75, right hemisphere
29.3
Basal amygdala nTPM: 35.8
1955
Male, age 76, both hemispheres
41.9
2685
Female, age 94, left hemisphere
41.2
2110
Male, age 80, left hemisphere
39.9
2609
Male, age 75, right hemisphere
36.8
2827
Female, age 67, right hemisphere
30.2
2243
Female, age 91, right hemisphere
24.7
Central amygdala nTPM: 57.4
2701
Female, age 91, right hemisphere
84.7
1905
Male, age 76, both hemispheres
60.3
2515
Male, age 75, right hemisphere
59.2
2239
Male, age 80, left hemisphere
45.4
2826
Female, age 94, left hemisphere
37.4
Corticomedial amygdala nTPM: 34.9
2829
Male, age 80, left hemisphere
49.1
2240
Male, age 76, both hemispheres
44.2
2429
Female, age 94, left hemisphere
38.4
2428
Male, age 75, right hemisphere
36.8
2242
Female, age 91, right hemisphere
20.4
2535
Female, age 67, right hemisphere
20.3
Lateral amygdala nTPM: 39.3
2255
Female, age 91, right hemisphere
68.7
1883
Male, age 76, both hemispheres
46.5
2516
Male, age 75, right hemisphere
34.6
2534
Female, age 94, left hemisphere
34.1
2830
Female, age 67, right hemisphere
25.9
2256
Male, age 80, left hemisphere
25.8
AMYGDALA - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
27.2
GTEx sample id
Sample description
nTPM
Brain - Amygdala Average nTPM: 27.2
Samples: 152
Max nTPM: 92.5
Min nTPM: 1.5
Std nTPM: 20.8
Median nTPM: 21.7
GTEX-1313W-0011-R4b-SM-5KLZV
50-59 years, female
92.5
GTEX-1B8L1-0011-R4a-SM-7EWFJ
60-69 years, male
78.6
GTEX-P44G-0011-R4A-SM-2I3FB
30-39 years, male
77.3
GTEX-1LVAO-0011-R4a-SM-EXURO
60-69 years, male
74.7
GTEX-16YQH-0011-R4a-SM-7EPGI
30-39 years, male
72.8
GTEX-131YS-0011-R4a-SM-5DUVL
60-69 years, female
72.1
GTEX-R55E-0011-R4A-SM-2TC5H
20-29 years, male
70.0
GTEX-14JIY-0011-R4b-SM-5ZZV7
60-69 years, male
69.3
GTEX-14ABY-0011-R4b-SM-5S2VN
50-59 years, male
68.1
GTEX-17EVP-0011-R4a-SM-79OML
40-49 years, male
64.9
GTEX-WZTO-0011-R4A-SM-3NMC7
40-49 years, male
64.3
GTEX-11NUK-0011-R4a-SM-DO12B
50-59 years, male
63.7
GTEX-1F7RK-0011-R4b-SM-9QEI7
20-29 years, female
61.5
GTEX-13X6K-0011-R4b-SM-5P9HO
60-69 years, female
60.5
GTEX-13VXU-0011-R4b-SM-5O9CI
50-59 years, male
60.0
GTEX-15SHU-0011-R4b-SM-7IGLC
40-49 years, female
58.5
GTEX-1399T-0011-R4b-SM-5DUVX
60-69 years, male
58.1
GTEX-1IY9M-0011-R4a-SM-C1YQ2
60-69 years, male
56.0
GTEX-1A3MX-0011-R4b-SM-7EWFK
60-69 years, male
55.6
GTEX-1ICLZ-0011-R4a-SM-CMKHL
60-69 years, male
54.9
GTEX-15DYW-0011-R4a-SM-6M46V
60-69 years, female
53.9
GTEX-WVLH-0011-R4A-SM-3MJFS
50-59 years, male
53.9
GTEX-1EMGI-0011-R4b-SM-CJI2D
60-69 years, male
52.6
GTEX-T5JC-0011-R4A-SM-32PLT
20-29 years, male
52.2
GTEX-P44H-0011-R4A-SM-2XCEW
40-49 years, male
52.1
GTEX-S7SE-0011-R4A-SM-2XCDB
50-59 years, male
51.7
GTEX-13X6J-0011-R4b-SM-5P9K4
50-59 years, male
50.6
GTEX-1GN73-0011-R4b-SM-9QEIK
60-69 years, male
49.9
GTEX-13O3O-0011-R4b-SM-5KM3F
60-69 years, female
49.5
GTEX-1AX9I-0011-R4b-SM-7EPIB
60-69 years, male
49.5
GTEX-ZVZQ-0011-R4b-SM-57WCZ
60-69 years, female
46.4
GTEX-RNOR-0011-R4A-SM-3GAD3
50-59 years, female
46.2
GTEX-1H3NZ-0011-R4a-SM-CL54T
60-69 years, male
43.7
GTEX-14JG1-0011-R4b-SM-62LEB
40-49 years, male
43.4
GTEX-ZAB4-0011-R4a-SM-4SOKB
40-49 years, male
43.3
GTEX-1JMQJ-0011-R4b-SM-EXUT8
50-59 years, male
43.2
GTEX-11PRG-0011-R4a-SM-DNZZR
50-59 years, male
42.8
GTEX-13N1W-0011-R4a-SM-5MR52
70-79 years, male
42.7
GTEX-14PN4-0011-R4a-SM-686ZT
50-59 years, male
41.1
GTEX-1HFI6-0011-R4b-SM-A96RT
40-49 years, male
40.8
GTEX-15ER7-0011-R4a-SM-6M46S
20-29 years, female
39.9
GTEX-UTHO-0011-R4A-SM-3GIJP
60-69 years, male
39.2
GTEX-13NYB-0011-R4b-SM-9QEGJ
40-49 years, male
39.2
GTEX-QVJO-0011-R4A-SM-2S1QL
60-69 years, female
36.6
GTEX-1C6WA-0011-R4a-SM-9QEH2
60-69 years, male
35.9
GTEX-Q2AG-0011-R4A-SM-2HMKA
40-49 years, female
34.7
GTEX-12WSD-0011-R4b-SM-5LZUA
60-69 years, female
34.0
GTEX-13O3Q-0011-R4a-SM-5P9H2
50-59 years, male
33.8
GTEX-14BIM-0011-R4b-SM-5S2RK
60-69 years, female
33.6
GTEX-131XH-0011-R4b-SM-5DUWB
50-59 years, male
33.1
GTEX-1F75A-0011-R4a-SM-ARL8J
50-59 years, male
32.8
GTEX-13RTJ-0011-R4b-SM-5PNX1
60-69 years, male
32.0
GTEX-12WSF-0011-R4b-SM-5HL88
70-79 years, male
31.5
GTEX-YFC4-0011-R4a-SM-4RGLQ
40-49 years, female
31.5
GTEX-TSE9-0011-R4A-SM-3DB7H
60-69 years, female
31.0
GTEX-T6MN-0011-R4A-SM-32QPG
50-59 years, male
30.0
GTEX-1LSVX-0011-R4b-SM-EXURP
60-69 years, male
29.9
GTEX-N7MS-0011-R4a-SM-2HMKW
60-69 years, male
29.6
GTEX-N7MT-0011-R4a-SM-2I3G9
60-69 years, female
29.2
GTEX-1HB9E-0011-R4b-SM-ARZLS
50-59 years, male
28.8
GTEX-14E7W-0011-R4b-SM-62LEA
70-79 years, male
27.8
GTEX-14PJM-0011-R4a-SM-5YYAS
50-59 years, female
27.6
GTEX-15CHQ-0011-R4a-SM-686ZX
60-69 years, male
27.6
GTEX-1GTWX-0011-R4a-SM-C1YQI
60-69 years, male
27.1
GTEX-X585-0011-R4B-SM-46MVH
50-59 years, male
26.8
GTEX-QVUS-0011-R4A-SM-3GAE7
60-69 years, female
26.3
GTEX-1GMR8-0011-R4a-SM-9OSX1
50-59 years, female
26.3
GTEX-15EO6-0011-R4a-SM-7KUKZ
50-59 years, male
23.8
GTEX-145LS-0011-R4b-SM-5S2UT
60-69 years, female
23.7
GTEX-13SLX-0011-R4a-SM-5O9BJ
50-59 years, female
23.6
GTEX-WHSE-0011-R4A-SM-3P5ZN
20-29 years, male
23.2
GTEX-15DCD-0011-R4a-SM-69LPB
70-79 years, female
22.7
GTEX-1F6IF-0011-R4b-SM-CKZNJ
60-69 years, male
22.5
GTEX-1JN6P-0011-R4a-SM-EZ6MS
60-69 years, male
22.1
GTEX-11TTK-0011-R4a-SM-DNZZU
60-69 years, female
22.0
GTEX-1I1GR-0011-R4a-SM-CMKHC
60-69 years, male
22.0
GTEX-QMR6-0011-R4A-SM-32PKU
50-59 years, male
21.5
GTEX-1H1ZS-0011-R4b-SM-CKZO7
70-79 years, male
20.7
GTEX-1N2EE-0011-R4a-SM-EXOII
60-69 years, male
19.7
GTEX-13X6I-0011-R4b-SM-5PNU9
60-69 years, male
19.1
GTEX-15DDE-0011-R4b-SM-7KULI
50-59 years, female
19.1
GTEX-13OW6-0011-R4a-SM-5O9DX
50-59 years, male
19.0
GTEX-13PVQ-0011-R4a-SM-5O9CT
50-59 years, male
18.9
GTEX-1E1VI-0011-R4b-SM-9QEHV
50-59 years, male
18.7
GTEX-14DAQ-0011-R4a-SM-5YYAI
60-69 years, female
17.3
GTEX-1HCU6-0011-R4b-SM-ARU74
60-69 years, female
17.3
GTEX-Y8DK-0011-R4A-SM-EXUR1
60-69 years, male
17.3
GTEX-13112-0011-R4b-SM-5DUXL
50-59 years, male
16.9
GTEX-ZAK1-0011-R4a-SM-6AJBK
50-59 years, female
16.8
GTEX-XLM4-0011-R4B-SM-4AT5C
60-69 years, male
16.6
GTEX-NPJ7-0011-R4a-SM-2I3GJ
60-69 years, female
16.5
GTEX-1HBPH-0011-R4a-SM-A96RX
40-49 years, female
16.1
GTEX-14PQA-0011-R4b-SM-6AJBU
50-59 years, female
15.8
GTEX-1N2DW-0011-R4b-SM-EZ6MD
50-59 years, male
15.0
GTEX-NL3H-0011-R4a-SM-2I3GK
60-69 years, male
14.9
GTEX-14ASI-0011-R4a-SM-69LQ4
60-69 years, male
13.6
GTEX-11ONC-0011-R4b-SM-DO93H
60-69 years, male
13.5
GTEX-1H1CY-0011-R4b-SM-CJI3G
60-69 years, female
13.0
GTEX-1HBPI-0011-R4a-SM-CJI3K
50-59 years, male
12.9
GTEX-1CB4G-0011-R4b-SM-CJI28
60-69 years, male
12.8
GTEX-13OW5-0011-R4b-SM-5L3HS
60-69 years, male
12.2
GTEX-12ZZZ-0011-R4b-SM-5DUV7
60-69 years, male
12.1
GTEX-1B996-0011-R4b-SM-9OSVO
60-69 years, male
12.0
GTEX-1H1DG-0011-R4a-SM-CE6RQ
70-79 years, male
11.7
GTEX-18464-0011-R4a-SM-7LG6T
50-59 years, male
11.6
GTEX-17HG3-0011-R4a-SM-7IGLL
30-39 years, female
11.4
GTEX-17F97-0011-R4b-SM-7KFS2
50-59 years, male
11.3
GTEX-OHPN-0011-R4A-SM-2I5FD
60-69 years, female
11.3
GTEX-1EX96-0011-R4a-SM-ARU82
50-59 years, male
10.7
GTEX-QDT8-0011-R4A-SM-32PKM
30-39 years, female
10.6
GTEX-1GZ4I-0011-R4a-SM-9QEI9
50-59 years, male
10.6
GTEX-13OW7-0011-R4b-SM-5O9CX
50-59 years, male
10.4
GTEX-1H3O1-0011-R4b-SM-A9SKE
60-69 years, male
10.2
GTEX-1J1OQ-0011-R4a-SM-D4P2A
40-49 years, female
10.2
GTEX-X4XX-0011-R4B-SM-46MWL
60-69 years, male
10.0
GTEX-13FLV-0011-R4a-SM-5LZYU
50-59 years, male
9.9
GTEX-NL4W-0011-R4a-SM-2I5GZ
50-59 years, male
9.9
GTEX-13N2G-0011-R4b-SM-5MR54
60-69 years, male
9.2
GTEX-13OVL-0011-R4b-SM-5L3HV
50-59 years, male
9.2
GTEX-13CZV-0011-R4b-SM-5J2NY
60-69 years, male
8.4
GTEX-12WSA-0011-R4a-SM-57WB7
60-69 years, male
8.2
GTEX-17EVQ-0011-R4b-SM-7LT94
70-79 years, male
8.2
GTEX-13JVG-0011-R4a-SM-5MR4C
60-69 years, male
8.1
GTEX-13OW8-0011-R4a-SM-9WG6V
60-69 years, male
7.7
GTEX-1C6VR-0011-R4b-SM-9QEGZ
60-69 years, male
7.6
GTEX-1GF9W-0011-R4a-SM-CE6RH
60-69 years, male
7.6
GTEX-1J8EW-0011-R4b-SM-ARU89
60-69 years, female
7.6
GTEX-139T8-0011-R4a-SM-5HL54
60-69 years, male
7.2
GTEX-ZE9C-0011-R4a-SM-4WKH6
60-69 years, male
7.2
GTEX-NPJ8-0011-R4a-SM-2HML3
40-49 years, male
6.7
GTEX-X4EP-0011-R4B-SM-3P627
60-69 years, female
6.7
GTEX-13OVH-0011-R4a-SM-5KM3W
70-79 years, male
6.5
GTEX-1F48J-0011-R4b-SM-9OSVX
50-59 years, female
6.3
GTEX-13QIC-0011-R4a-SM-5PNX8
60-69 years, female
6.1
GTEX-1J8Q2-0011-R4a-SM-ADEHA
60-69 years, male
5.7
GTEX-13NYS-0011-R4b-SM-5MR3O
60-69 years, male
5.6
GTEX-144GL-0011-R4a-SM-5PNUI
50-59 years, male
5.4
GTEX-12WSH-0011-R4a-SM-5GU6K
50-59 years, male
5.0
GTEX-1445S-0011-R4a-SM-5PNWN
60-69 years, male
4.5
GTEX-14JFF-0011-R4a-SM-5ZZV5
60-69 years, male
4.4
GTEX-11ZU8-0011-R4a-SM-5BC6Y
60-69 years, male
4.2
GTEX-183WM-0011-R4a-SM-7LG6S
70-79 years, female
4.1
GTEX-12ZZW-0011-R4a-SM-5DUX9
50-59 years, male
3.9
GTEX-1JJEA-0011-R4a-SM-EXUTC
60-69 years, male
3.8
GTEX-13OVJ-0011-R4b-SM-5P9H5
50-59 years, female
3.5
GTEX-11ZVC-0011-R4a-SM-5BC6Z
50-59 years, female
3.4
GTEX-147GR-0011-R4a-SM-5S2V2
60-69 years, male
3.2
GTEX-13SLW-0011-R4b-SM-5S2W2
70-79 years, male
3.1
GTEX-1H23P-0011-R4b-SM-CL54R
60-69 years, male
2.9
GTEX-145MI-0011-R4b-SM-5PNZH
60-69 years, female
2.7
GTEX-1H2FU-0011-R4a-SM-CL551
60-69 years, female
2.1
GTEX-1CB4J-0011-R4b-SM-9WG5P
60-69 years, male
1.5
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AMYGDALA - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
123.8
Mouse sample
Sample description
nTPM
Amygdala nTPM: 123.8
Samples: 4
Max nTPM: 154.4
Min nTPM: 100.7
Sample A
Male
154.4
Sample B
Male
100.7
Sample C
Female
132.9
Sample D
Female
107.3
AMYGDALA - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.