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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
293.8
nTPM
HPA Brain:
180.5
nTPM
GTEx:
293.8
nTPM
FANTOM5:
488.1
Scaled Tags Per Million
Pig:
143.8
nTPM
Mouse:
101.0
nTPM
Allen mouse:
7.0
Expression energy
MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
180.5
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 157.2
2019
Male, age 18, unknown
200.0
2666
Male, age 74, left hemisphere
194.6
2586
Male, age 75, left hemisphere
181.4
1827
Male, age 72, unknown
153.3
2411
Female, age 72, unknown
153.0
2828
Female, age 72, unknown
143.1
1830
Male, age 51, unknown
142.0
1833
Male, age 53, unknown
141.4
1870
Female, age 42, unknown
138.7
2219
Male, age 76, both hemispheres
124.6
Dorsal raphe nucleus nTPM: 139.7
2750
Male, age 76, both hemispheres
170.0
1828
Male, age 53, unknown
157.2
2047
Male, age 72, unknown
128.1
2298
Female, age 72, unknown
126.3
2016
Female, age 72, unknown
116.7
Inferior colliculus nTPM: 129.9
1890
Male, age 53, unknown
158.7
2097
Female, age 72, unknown
140.5
1848
Female, age 42, unknown
110.3
2849
Male, age 72, unknown
110.3
Median raphe nucleus nTPM: 164.1
2220
Male, age 76, midline
164.1
Periaquaductal grey, anterior nTPM: 130.5
2502
Female, age 75, unknown
144.0
1795
Male, age 51, unknown
127.3
1947
Male, age 18, unknown
120.0
Periaquaductal grey, dorsal nTPM: 132.1
2850
Male, age 76, both hemispheres
171.9
1831
Male, age 72, unknown
146.3
2464
Female, age 72, unknown
122.6
1840
Male, age 53, unknown
87.6
Periaquaductal grey, lateral nTPM: 126.6
2140
Male, age 76, both hemispheres
148.5
2053
Male, age 18, unknown
118.5
2272
Male, age 74, both hemispheres
112.7
Pretectal area nTPM: 156.0
2007
Male, age 72, unknown
207.3
1817
Female, age 42, unknown
197.5
1815
Male, age 53, unknown
189.5
1816
Male, age 51, unknown
180.6
1944
Female, age 72, unknown
171.5
2407
Male, age 75, both hemispheres
157.5
2667
Female, age 75, unknown
133.0
2316
Male, age 76, right hemisphere
129.0
2825
Male, age 18, unknown
120.4
2224
Female, age 72, unknown
115.2
2273
Male, age 74, both hemispheres
114.5
Red nucleus nTPM: 180.5
1904
Male, age 53, unknown
207.9
2785
Male, age 18, unknown
204.1
1821
Female, age 72, unknown
202.0
1865
Male, age 51, unknown
197.1
1954
Female, age 42, unknown
176.1
2503
Female, age 72, unknown
175.8
2588
Male, age 74, left hemisphere
175.0
2227
Male, age 72, unknown
171.8
2769
Male, age 72, unknown
168.7
2823
Male, age 76, right hemisphere
165.2
2725
Female, age 75, unknown
164.9
2584
Male, age 75, left hemisphere
156.9
Substantia nigra nTPM: 174.7
1916
Female, age 42, unknown
235.9
1851
Male, age 51, unknown
189.3
2699
Male, age 18, unknown
180.6
1889
Female, age 72, unknown
173.7
2583
Male, age 75, right hemisphere
168.9
1941
Male, age 53, unknown
167.1
2409
Female, age 72, unknown
166.1
2665
Male, age 74, both hemispheres
163.3
2590
Female, age 75, unknown
150.8
2241
Male, age 72, unknown
150.7
Superior colliculus nTPM: 148.3
2668
Female, age 75, unknown
191.0
1913
Female, age 42, unknown
164.6
1995
Male, age 72, unknown
154.8
2087
Female, age 72, unknown
153.6
2587
Male, age 74, left hemisphere
144.0
2261
Male, age 18, unknown
140.7
2664
Male, age 75, both hemispheres
140.3
1796
Male, age 53, unknown
138.0
1839
Male, age 51, unknown
129.8
1895
Male, age 76, right hemisphere
126.8
Ventral tegmental area nTPM: 152.7
2223
Female, age 72, unknown
173.3
2410
Female, age 72, unknown
168.9
1915
Female, age 42, unknown
160.6
2218
Male, age 76, both hemispheres
144.1
1942
Male, age 51, unknown
135.7
2021
Male, age 53, unknown
133.6
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
293.8
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 293.8
Samples: 139
Max nTPM: 598.9
Min nTPM: 155.3
Std nTPM: 87.2
Median nTPM: 265.2
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
598.9
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
579.0
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
551.5
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
522.2
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
521.9
GTEX-OXRO-0011-R2A-SM-3NB1W
60-69 years, female
502.6
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
499.4
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
475.6
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
475.2
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
466.7
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
460.9
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
460.8
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
439.4
GTEX-1IKOH-0011-R2a-SM-CMKHO
60-69 years, female
403.3
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
391.5
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
391.0
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
390.1
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
386.2
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
381.5
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
378.7
GTEX-T5JC-0011-R2A-SM-32PLZ
20-29 years, male
378.3
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
369.2
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
361.3
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
358.7
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
358.3
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
353.6
GTEX-NL4W-0011-R2a-SM-2I5GV
50-59 years, male
353.3
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
348.5
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
344.6
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
341.0
GTEX-P44G-0011-R2A-SM-2XCD2
30-39 years, male
339.2
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
336.6
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
336.0
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
335.9
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
333.0
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
330.3
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
328.9
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
328.1
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
326.6
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
323.7
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
323.5
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
320.8
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
316.4
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
315.9
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
314.9
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
314.1
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
314.0
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
313.9
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
310.7
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
309.2
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
309.0
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
307.6
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
304.1
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
302.3
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
299.7
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
295.3
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
294.1
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
290.7
GTEX-N7MT-0011-R2a-SM-2I3GI
60-69 years, female
284.4
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
282.8
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
278.1
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
277.6
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
276.4
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
276.1
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
273.0
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
271.8
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
270.7
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
269.4
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
267.1
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
265.2
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
261.3
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
260.8
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
260.5
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
258.6
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
258.1
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
257.3
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
254.8
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
254.3
GTEX-NPJ8-0011-R2a-SM-2TC6M
40-49 years, male
252.8
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
252.6
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
252.4
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
252.1
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
251.7
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
250.5
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
249.7
GTEX-PWO3-0011-R2A-SM-2S1OX
60-69 years, female
246.9
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
246.5
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
245.8
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
245.5
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
244.9
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
244.8
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
244.6
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
243.9
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
243.1
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
242.1
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
242.0
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
240.3
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
239.9
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
239.9
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
239.8
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
239.5
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
239.3
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
237.6
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
236.8
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
235.9
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
234.2
GTEX-N7MS-0011-R2a-SM-2HML6
60-69 years, male
234.0
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
232.7
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
231.7
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
230.0
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
229.6
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
228.8
GTEX-18464-0011-R2a-SM-731AL
50-59 years, male
228.8
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
227.9
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
227.0
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
224.7
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
222.9
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
222.9
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
218.3
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
215.7
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
213.3
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
213.0
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
212.9
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
210.4
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
208.7
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
208.3
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
207.0
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
206.5
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
204.4
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
200.4
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
199.2
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
197.3
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
195.1
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
193.6
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
190.4
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
186.1
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
176.5
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
168.3
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
155.3
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MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
101.0
Mouse sample
Sample description
nTPM
Midbrain nTPM: 101.0
Samples: 4
Max nTPM: 106.9
Min nTPM: 95.1
Sample A
Male
106.9
Sample B
Male
101.8
Sample C
Female
95.1
Sample D
Female
100.2
MIDBRAIN - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.