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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
h
m
l
n
Glial cells:
Medium
Neuronal cells:
Not detected
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
261.1
nTPM
HPA Brain:
136.5
nTPM
GTEx:
261.1
nTPM
FANTOM5:
244.8
Scaled Tags Per Million
Pig:
106.7
nTPM
Mouse:
96.1
nTPM
Allen mouse:
8.9
Expression energy
HIPPOCAMPUS - Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
Antibody CAB011596
Glial cells
Medium
Neuronal cells
Not detected
HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
136.5
Sample id
Sample description
nTPM
Hippocampus nTPM: 136.5
2529
Female, age 94, left hemisphere
151.2
2621
Female, age 67, right hemisphere
143.6
1898
Male, age 80, left hemisphere
141.0
1855
Male, age 76, left hemisphere
138.1
2148
Female, age 91, left hemisphere
125.6
1911
Female, age 85, right hemisphere
119.3
Dentate gyrus nTPM: 126.8
2010
Male, age 76, both hemispheres
150.2
2530
Female, age 94, left hemisphere
142.7
2531
Female, age 67, both hemispheres
121.7
2246
Female, age 85, both hemispheres
116.3
2528
Male, age 74, both hemispheres
116.0
1927
Female, age 91, both hemispheres
114.0
Entorhinal gyrus nTPM: 119.7
2117
Female, age 91, right hemisphere
128.9
1787
Male, age 76, left hemisphere
125.5
2764
Male, age 80, right hemisphere
125.1
2686
Male, age 75, right hemisphere
124.0
1938
Female, age 85, left hemisphere
121.2
2613
Female, age 94, left hemisphere
93.5
Hippocampus, CA1 nTPM: 133.4
2749
Male, age 80, left hemisphere
175.8
1873
Female, age 85, both hemispheres
128.7
2045
Male, age 76, both hemispheres
127.8
2527
Male, age 74, both hemispheres
124.7
2082
Female, age 91, right hemisphere
110.2
Hippocampus, CA2 nTPM: 126.3
1963
Male, age 80, left hemisphere
156.5
1892
Male, age 76, both hemispheres
135.5
2437
Female, age 94, left hemisphere
118.5
2249
Male, age 74, both hemispheres
118.4
1940
Female, age 85, left hemisphere
117.7
2113
Female, age 91, right hemisphere
111.3
Hippocampus, CA3 nTPM: 128.7
1867
Male, age 76, both hemispheres
151.7
2137
Male, age 80, left hemisphere
140.6
2861
Female, age 67, both hemispheres
127.1
1891
Female, age 85, both hemispheres
126.5
2436
Male, age 74, both hemispheres
118.2
2620
Female, age 94, left hemisphere
108.1
Parahippocampal cortex nTPM: 123.3
2018
Male, age 76, both hemispheres
143.4
2532
Female, age 72, left hemisphere
135.6
2692
Male, age 74, both hemispheres
133.6
1990
Female, age 91, right hemisphere
127.2
1850
Male, age 80, both hemispheres
126.0
2245
Female, age 91, both hemispheres
123.6
2250
Female, age 67, right hemisphere
118.1
1933
Female, age 85, both hemispheres
117.4
2622
Female, age 67, right hemisphere
114.6
2693
Female, age 94, both hemispheres
94.0
Perirhinal gyrus nTPM: 113.9
1847
Female, age 91, left hemisphere
126.3
2521
Female, age 94, right hemisphere
114.5
1794
Male, age 80, right hemisphere
113.4
1841
Female, age 85, right hemisphere
108.4
2848
Male, age 76, right hemisphere
106.8
Subiculum nTPM: 135.0
2042
Male, age 76, both hemispheres
167.0
1901
Male, age 80, both hemispheres
140.0
2438
Female, age 94, left hemisphere
131.5
1977
Female, age 85, both hemispheres
131.4
2619
Male, age 74, both hemispheres
125.4
2729
Female, age 91, right hemisphere
114.6
HIPPOCAMPAL FORMATION - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
261.1
GTEx sample id
Sample description
nTPM
Brain - Hippocampus Average nTPM: 261.1
Samples: 197
Max nTPM: 630.4
Min nTPM: 143.9
Std nTPM: 72.5
Median nTPM: 244.3
GTEX-1CB4J-0011-R1a-SM-9WG64
60-69 years, male
630.4
GTEX-X4EP-0011-R1A-SM-3P624
60-69 years, female
560.7
GTEX-13NZ8-0011-R1b-SM-5KM3V
60-69 years, female
553.9
GTEX-13NYS-0011-R1b-SM-5MR55
60-69 years, male
495.8
GTEX-11TUW-0011-R1a-SM-DO92S
60-69 years, male
481.0
GTEX-13OW5-0011-R1b-SM-5L3GE
60-69 years, male
473.6
GTEX-12WSH-0011-R1a-SM-5GU5V
50-59 years, male
469.6
GTEX-1A32A-0011-R1a-SM-7P8SQ
50-59 years, female
426.9
GTEX-13RTL-0011-R1a-SM-5PNZ8
40-49 years, male
416.0
GTEX-13PDP-0011-R1a-SM-5PNX5
60-69 years, male
391.7
GTEX-1GN73-0011-R1a-SM-CKZNT
60-69 years, male
389.5
GTEX-1HSMO-0011-R1a-SM-CM2SV
60-69 years, male
382.2
GTEX-NL3H-0011-R1a-SM-48TDJ
60-69 years, male
378.9
GTEX-14PN4-0011-R1b-SM-69LP8
50-59 years, male
377.2
GTEX-14LLW-0011-R1a-SM-5ZZVD
70-79 years, female
373.2
GTEX-1B996-0011-R1b-SM-7P8PO
60-69 years, male
370.0
GTEX-18A6Q-0011-R1b-SM-731DI
60-69 years, male
369.0
GTEX-WHSE-0011-R1A-SM-3P5ZK
20-29 years, male
362.8
GTEX-13O3Q-0011-R1b-SM-5KM3L
50-59 years, male
348.2
GTEX-14C5O-0011-R1b-SM-6AJBW
60-69 years, male
346.3
GTEX-1H4P4-0011-R1b-SM-CL54V
50-59 years, male
340.2
GTEX-1399T-0011-R1b-SM-5DUWN
60-69 years, male
337.0
GTEX-1HR98-0011-R1a-SM-ARZLQ
60-69 years, male
334.8
GTEX-1HT8W-0011-R1b-SM-CJI3V
30-39 years, male
332.0
GTEX-13NYB-0011-R1b-SM-5KM4F
40-49 years, male
329.7
GTEX-UTHO-0011-R1A-SM-3GIJO
60-69 years, male
314.0
GTEX-1EX96-0011-R1a-SM-CE6R5
50-59 years, male
313.9
GTEX-17HHY-0011-R1a-SM-7189V
50-59 years, male
312.0
GTEX-OHPN-0011-R1A-SM-2I5GB
60-69 years, female
312.0
GTEX-13112-0011-R1b-SM-5HL7K
50-59 years, male
311.9
GTEX-12WSE-0011-R1b-SM-5GU4V
20-29 years, male
309.8
GTEX-X4XX-0011-R1B-SM-3P622
60-69 years, male
308.3
GTEX-XMD1-0011-R1A-SM-4AT4C
60-69 years, male
306.1
GTEX-1GMR8-0011-R1b-SM-CJI2O
50-59 years, female
305.6
GTEX-144GL-0011-R1a-SM-5PNZ5
50-59 years, male
305.1
GTEX-131YS-0011-R1a-SM-5DUXC
60-69 years, female
304.6
GTEX-1IOXB-0011-R1a-SM-D4P27
50-59 years, male
298.9
GTEX-1F75A-0011-R1b-SM-CE6RA
50-59 years, male
298.6
GTEX-13FXS-0011-R1a-SM-5K7U6
50-59 years, male
297.4
GTEX-WWYW-0011-R1A-SM-3TW8G
50-59 years, female
296.7
GTEX-13N2G-0011-R1b-SM-5MR3G
60-69 years, male
295.2
GTEX-TSE9-0011-R1A-SM-3DB7E
60-69 years, female
292.0
GTEX-1J8Q2-0011-R1a-SM-D4P2D
60-69 years, male
289.1
GTEX-14ABY-0011-R1a-SM-6EU2W
50-59 years, male
288.0
GTEX-T6MN-0011-R1A-SM-32QOY
50-59 years, male
287.5
GTEX-14LZ3-0011-R1a-SM-69LP5
60-69 years, female
287.4
GTEX-1LG7Y-0011-R1a-SM-EYYWV
50-59 years, male
286.1
GTEX-13QJC-0011-R1b-SM-5S2UU
60-69 years, female
284.7
GTEX-ZF28-0011-R1a-SM-4WWD1
60-69 years, male
283.8
GTEX-13N1W-0011-R1b-SM-5MR4T
70-79 years, male
283.4
GTEX-16YQH-0011-R1a-SM-7LT8R
30-39 years, male
281.7
GTEX-13QIC-0011-R1a-SM-5O9CJ
60-69 years, female
281.3
GTEX-12WSF-0011-R1a-SM-5DUVI
70-79 years, male
281.1
GTEX-1LB8K-0011-R1b-SM-EZ6MV
50-59 years, male
280.8
GTEX-144GO-0011-R1a-SM-5PNWO
60-69 years, male
280.3
GTEX-13OW7-0011-R1b-SM-5L3HF
50-59 years, male
279.6
GTEX-1GN2E-0011-R1b-SM-CE6RJ
60-69 years, male
278.8
GTEX-1H1DG-0011-R1b-SM-CKZP1
70-79 years, male
278.1
GTEX-1CAV2-0011-R1a-SM-ARZML
40-49 years, female
277.5
GTEX-1313W-0011-R1b-SM-5EQ4A
50-59 years, female
275.8
GTEX-1CB4G-0011-R1b-SM-9QEHT
60-69 years, male
275.2
GTEX-1A3MX-0011-R1b-SM-7P8PH
60-69 years, male
274.3
GTEX-183WM-0011-R1a-SM-718A8
70-79 years, female
274.2
GTEX-11ZTS-0011-R1a-SM-5BC71
60-69 years, female
273.8
GTEX-139TT-0011-R1a-SM-5LZVD
60-69 years, male
272.3
GTEX-13FTY-0011-R1a-SM-5LZXE
40-49 years, female
271.3
GTEX-17HG3-0011-R1a-SM-7LG6H
30-39 years, female
268.9
GTEX-WZTO-0011-R1B-SM-3NMAR
40-49 years, male
268.3
GTEX-NPJ8-0011-R1a-SM-33HCB
40-49 years, male
266.3
GTEX-1A8G6-0011-R1a-SM-7P8PC
60-69 years, male
266.2
GTEX-1F6I4-0011-R1a-SM-9OSWU
60-69 years, male
265.3
GTEX-13JUV-0011-R1a-SM-5LZY4
40-49 years, female
264.2
GTEX-13FLW-0011-R1b-SM-5LZX2
50-59 years, male
263.7
GTEX-1H1CY-0011-R1a-SM-CKZOZ
60-69 years, female
263.4
GTEX-14E6D-0011-R1b-SM-5YYAW
50-59 years, male
262.9
GTEX-1E1VI-0011-R1a-SM-ARZMM
50-59 years, male
262.4
GTEX-11UD1-0011-R1b-SM-5BC7D
40-49 years, female
260.0
GTEX-14PJM-0011-R1a-SM-CNPO3
50-59 years, female
259.4
GTEX-12WSM-0011-R1a-SM-5LZW6
60-69 years, male
258.3
GTEX-13S7M-0011-R1b-SM-5PNZE
60-69 years, female
257.9
GTEX-13O3O-0011-R1b-SM-5KM2K
60-69 years, female
256.4
GTEX-17F97-0011-R1b-SM-7IGM9
50-59 years, male
255.9
GTEX-1GN1U-0011-R1a-SM-CJI25
50-59 years, female
255.3
GTEX-16XZZ-0011-R1a-SM-7LTAH
60-69 years, male
254.8
GTEX-17EVP-0011-R1a-SM-7DHLA
40-49 years, male
254.8
GTEX-1HSKV-0011-R1b-SM-CMKH7
60-69 years, male
254.2
GTEX-1EKGG-0011-R1b-SM-9QEI1
60-69 years, male
253.7
GTEX-1B8SF-0011-R1b-SM-7P8Q8
60-69 years, male
253.1
GTEX-ZE7O-0011-R1a-SM-57WDM
50-59 years, female
253.0
GTEX-17MF6-0011-R1a-SM-72D6O
40-49 years, male
251.5
GTEX-T5JC-0011-R1A-SM-32PM6
20-29 years, male
251.2
GTEX-YFC4-0011-R1a-SM-4V6EH
40-49 years, female
250.5
GTEX-ZUA1-0011-R1a-SM-4YCE2
40-49 years, male
249.8
GTEX-13OVJ-0011-R1b-SM-5L3I6
50-59 years, female
248.4
GTEX-12ZZX-0011-R1a-SM-5EQ6B
40-49 years, female
248.3
GTEX-1I1GS-0011-R1a-SM-CJI43
60-69 years, male
247.9
GTEX-QMR6-0011-R1A-SM-32PKW
50-59 years, male
246.1
GTEX-1F75W-0011-R1a-SM-ARU81
60-69 years, male
244.5
GTEX-14JIY-0011-R1a-SM-68713
60-69 years, male
244.3
GTEX-1HGF4-0011-R1a-SM-CJI3S
60-69 years, male
242.7
GTEX-1B933-0011-R1b-SM-9QEGW
50-59 years, female
240.4
GTEX-1C6VR-0011-R1a-SM-7MXUE
60-69 years, male
240.3
GTEX-12WSD-0011-R1b-SM-5LZVY
60-69 years, female
239.0
GTEX-1GF9V-0011-R1a-SM-CKZNQ
60-69 years, male
237.9
GTEX-13NZA-0011-R1b-SM-5LUAF
60-69 years, male
237.8
GTEX-N7MT-0011-R1a-SM-CNPO1
60-69 years, female
237.6
GTEX-1H3O1-0011-R1b-SM-CL554
60-69 years, male
236.6
GTEX-RNOR-0011-R1A-SM-CNNP5
50-59 years, female
235.7
GTEX-17EVQ-0011-R1a-SM-7189S
70-79 years, male
235.0
GTEX-13OVL-0011-R1a-SM-5L3H5
50-59 years, male
234.9
GTEX-132Q8-0011-R1a-SM-5EGLK
60-69 years, male
234.8
GTEX-1H23P-0011-R1a-SM-ACKVC
60-69 years, male
233.7
GTEX-1IKK5-0011-R1b-SM-CE6SQ
60-69 years, male
232.2
GTEX-P44G-0011-R1A-SM-2I3FE
30-39 years, male
231.5
GTEX-WVLH-0011-R1A-SM-4MVOK
50-59 years, male
231.4
GTEX-1GZHY-0011-R1a-SM-CE6RR
50-59 years, female
231.0
GTEX-16GPK-0011-R1b-SM-7EWDH
60-69 years, male
230.4
GTEX-1J1OQ-0011-R1a-SM-A9G1Z
40-49 years, female
229.7
GTEX-14PQA-0011-R1b-SM-6EU1G
50-59 years, female
229.5
GTEX-16NPV-0011-R1b-SM-7MGVZ
50-59 years, female
228.8
GTEX-1ICLZ-0011-R1b-SM-A9SM3
60-69 years, male
228.8
GTEX-X585-0011-R1B-SM-46MVE
50-59 years, male
228.4
GTEX-YJ89-0011-R1a-SM-4RGLS
60-69 years, male
228.4
GTEX-1H3VE-0011-R1a-SM-A9G1K
40-49 years, male
227.7
GTEX-N7MS-0011-R1a-SM-2HMJG
60-69 years, male
227.6
GTEX-1I1GV-0011-R1a-SM-CL559
60-69 years, male
227.3
GTEX-15CHQ-0011-R1a-SM-COH27
60-69 years, male
226.0
GTEX-13FHP-0011-R1b-SM-5K7XL
50-59 years, male
225.4
GTEX-14BIM-0011-R1a-SM-69LQI
60-69 years, female
225.4
GTEX-P44H-0011-R1A-SM-3NM8J
40-49 years, male
225.2
GTEX-11GSO-0011-R1b-SM-57WD3
60-69 years, male
225.0
GTEX-1GF9W-0011-R1a-SM-9QEIQ
60-69 years, male
224.1
GTEX-14ASI-0011-R1b-SM-5S2TY
60-69 years, male
223.3
GTEX-1HBPI-0011-R1b-SM-A9SKF
50-59 years, male
222.3
GTEX-PVOW-0011-R1A-SM-32PL6
40-49 years, male
221.7
GTEX-WL46-0011-R1A-SM-3LK6M
50-59 years, male
221.7
GTEX-17HII-0011-R1b-SM-7MGVW
50-59 years, male
219.8
GTEX-1IDJH-0011-R1b-SM-ARU6U
70-79 years, male
219.5
GTEX-16Z82-0011-R1b-SM-7EPHZ
60-69 years, male
219.3
GTEX-Y8DK-0011-R1A-SM-4RGLO
60-69 years, male
219.3
GTEX-14E7W-0011-R1b-SM-5YYAT
70-79 years, male
219.2
GTEX-145LU-0011-R1a-SM-5Q5CE
50-59 years, male
218.5
GTEX-11WQC-0011-R1b-SM-DO932
60-69 years, male
218.4
GTEX-1E2YA-0011-R1b-SM-CJI29
50-59 years, male
218.1
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y
40-49 years, male
218.1
GTEX-1C64N-0011-R1b-SM-7P8Q7
50-59 years, male
217.6
GTEX-ZDXO-0011-R1a-SM-4WKF4
60-69 years, male
217.2
GTEX-145MH-0011-R1b-SM-5PNWY
50-59 years, male
216.8
GTEX-13JVG-0011-R1a-SM-5KM32
60-69 years, male
216.7
GTEX-1AX9I-0011-R1b-SM-7RHG2
60-69 years, male
216.3
GTEX-11EI6-0011-R1a-SM-DO93L
60-69 years, male
215.9
GTEX-1GTWX-0011-R1a-SM-CE6RL
60-69 years, male
215.9
GTEX-1F6IF-0011-R1b-SM-9WG78
60-69 years, male
215.6
GTEX-139T8-0011-R1a-SM-5HL75
60-69 years, male
215.3
GTEX-Q2AG-0011-R1A-SM-2HMJI
40-49 years, female
215.1
GTEX-11GS4-0011-R1a-SM-DO129
60-69 years, male
215.0
GTEX-1H1ZS-0011-R1b-SM-A9G1E
70-79 years, male
214.5
GTEX-17JCI-0011-R1b-SM-718A3
60-69 years, female
214.3
GTEX-13OW6-0011-R1a-SM-5L3HQ
50-59 years, male
213.2
GTEX-15ER7-0011-R1b-SM-7KUE1
20-29 years, female
212.8
GTEX-11ZVC-0011-R1b-SM-5BC6M
50-59 years, female
211.3
GTEX-13CF2-0011-R1a-SM-5LZY1
60-69 years, male
210.5
GTEX-1H3NZ-0011-R1a-SM-CKZP5
60-69 years, male
209.9
GTEX-1EH9U-0011-R1b-SM-CJI2B
60-69 years, male
209.2
GTEX-1BAJH-0011-R1a-SM-7P8SV
70-79 years, male
208.3
GTEX-1B8L1-0011-R1a-SM-7P8SS
60-69 years, male
206.9
GTEX-13X6I-0011-R1b-SM-5PNZC
60-69 years, male
205.4
GTEX-11DXW-0011-R1a-SM-DNZZD
40-49 years, male
203.6
GTEX-S7SE-0011-R1A-SM-2XCDE
50-59 years, male
203.5
GTEX-1EWIQ-0011-R1a-SM-9OSX7
70-79 years, female
202.1
GTEX-14PJO-0011-R1b-SM-6AJAK
60-69 years, male
201.8
GTEX-11GSP-0011-R1a-SM-9QEJ3
60-69 years, female
201.0
GTEX-ZVZQ-0011-R1a-SM-57WBU
60-69 years, female
200.2
GTEX-1EMGI-0011-R1b-SM-9OSWZ
60-69 years, male
198.4
GTEX-R55E-0011-R1A-SM-2TC6N
20-29 years, male
197.2
GTEX-13SLW-0011-R1a-SM-5S2W7
70-79 years, male
195.4
GTEX-13OW8-0011-R1a-SM-5L3HI
60-69 years, male
193.8
GTEX-NPJ7-0011-R1a-SM-3GACT
60-69 years, female
193.4
GTEX-15UF6-0011-R1a-SM-9QEGH
70-79 years, female
192.5
GTEX-15DCD-0011-R1b-SM-6LPIJ
70-79 years, female
191.1
GTEX-145LS-0011-R1b-SM-5PNUP
60-69 years, female
190.9
GTEX-PWO3-0011-R1A-SM-2I5EW
60-69 years, female
189.2
GTEX-1I1GQ-0011-R1a-SM-CY8GG
50-59 years, male
186.3
GTEX-1212Z-0011-R1b-SM-5BC72
60-69 years, male
185.2
GTEX-13RTJ-0011-R1a-SM-5O9D9
60-69 years, male
184.9
GTEX-QDT8-0011-R1A-SM-32PKS
30-39 years, female
184.2
GTEX-13G51-0011-R1a-SM-5LZYR
60-69 years, male
183.0
GTEX-QVUS-0011-R1A-SM-3GAD2
60-69 years, female
182.6
GTEX-1IY9M-0011-R1a-SM-EXURZ
60-69 years, male
182.1
GTEX-ZAB4-0011-R1a-SM-4RGNO
40-49 years, male
180.9
GTEX-QVJO-0011-R1A-SM-2S1QI
60-69 years, female
179.9
GTEX-1C6VQ-0011-R1a-SM-7P8Q2
50-59 years, male
179.2
GTEX-1F48J-0011-R1a-SM-9QEIC
50-59 years, female
176.0
GTEX-11ONC-0011-R1a-SM-57WD4
60-69 years, male
167.2
GTEX-1I1HK-0011-R1b-SM-CM2T7
60-69 years, male
167.1
GTEX-13FHO-0011-R1b-SM-5KLZG
60-69 years, male
162.7
GTEX-131XH-0011-R1a-SM-5DUWA
50-59 years, male
143.9
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
96.1
Mouse sample
Sample description
nTPM
Entorhinal cortex nTPM: 96.1
Samples: 4
Max nTPM: 108.9
Min nTPM: 77.3
Sample A
Male
98.7
Sample B
Male
108.9
Sample C
Female
99.6
Sample D
Female
77.3
Hippocampal formation nTPM: 92.0
Samples: 4
Max nTPM: 105.6
Min nTPM: 81.8
Sample A
Male
105.6
Sample B
Male
91.4
Sample C
Female
81.8
Sample D
Female
89.1
HIPPOCAMPAL FORMATION - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.