We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SDF2L1 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
78.9
Number of samples
362
Samples
Sample
Description
TPM
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
311.3
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
284.7
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
264.4
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
254.9
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
219.6
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
206.1
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
205.5
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
199.1
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
197.5
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
197.4
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
180.9
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
179.0
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
174.7
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
172.2
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
162.7
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
159.5
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
157.4
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
154.4
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
152.4
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
151.8
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
151.1
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
151.0
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
148.6
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
146.5
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
145.4
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
144.1
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
143.6
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
142.1
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
141.8
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
140.4
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
139.9
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
138.6
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
138.3
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
137.2
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
136.7
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
136.2
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
135.9
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
135.9
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
134.5
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
133.5
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
130.0
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
129.8
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
128.1
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
125.6
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
125.2
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
124.6
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
124.6
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
122.5
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
122.4
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
121.4
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
121.0
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
120.9
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
120.7
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
120.2
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
119.2
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
117.8
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
117.7
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
116.4
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
116.4
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
116.4
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
114.3
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
113.9
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
113.3
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
112.4
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
111.3
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
110.5
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
109.7
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
108.1
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
108.1
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
107.5
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
106.4
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
106.3
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
106.1
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
105.1
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
104.6
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
103.9
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
103.9
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
103.6
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
103.3
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
103.2
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
102.9
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
102.7
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
102.5
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
102.1
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
101.7
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
101.1
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
100.9
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
100.8
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
100.5
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
100.3
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
100.1
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
99.9
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
99.2
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
98.8
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
98.7
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
98.6
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
98.6
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
98.5
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
97.9
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
97.6
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
97.5
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
97.5
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
97.3
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
96.0
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
95.7
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
95.6
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
95.5
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
95.1
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
95.0
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
94.9
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
94.4
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
93.6
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
93.3
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
93.0
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
93.0
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
92.9
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
92.7
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
92.6
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
92.4
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
91.8
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
91.1
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
90.9
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
90.4
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
89.0
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
88.7
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
88.3
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
88.2
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
87.8
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
87.7
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
87.4
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
87.1
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
87.0
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
86.6
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
86.5
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
86.3
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
85.9
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
85.4
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
85.3
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
84.7
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
84.5
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
83.9
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
83.4
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
82.6
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
82.5
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
82.3
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
82.3
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
81.9
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
81.6
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
81.3
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
80.9
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
80.0
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
79.3
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
79.3
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
78.4
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
77.4
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
77.4
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
76.9
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
76.6
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
76.5
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
76.5
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
75.9
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
75.8
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
75.3
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
75.2
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
75.2
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
75.1
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
75.0
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
74.7
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
74.6
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
74.4
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
73.7
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
73.2
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
72.8
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
72.7
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
72.7
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
72.5
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
72.4
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
72.3
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
72.2
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
71.4
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
70.9
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
70.6
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
70.4
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
70.4
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
70.2
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
70.1
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
69.6
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
68.4
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
67.9
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
67.9
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
67.7
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
67.2
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
67.1
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
66.6
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
66.4
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
66.4
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
66.1
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
66.0
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
65.9
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
65.9
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
65.7
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
65.3
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
64.6
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
64.4
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
64.3
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
64.3
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
64.1
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
64.0
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
62.5
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
62.2
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
62.2
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
62.2
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
62.0
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
61.7
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
61.7
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
61.6
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
61.4
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
61.1
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
60.4
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
60.2
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
59.9
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
59.2
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
58.9
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
58.9
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
58.6
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
58.6
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
57.6
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
57.6
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
57.5
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
57.3
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
57.0
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
56.9
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
56.9
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
56.8
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
56.8
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
56.6
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
56.5
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
56.4
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
56.2
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
55.9
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
55.5
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
55.3
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
55.2
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
55.2
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
54.5
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
54.2
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
54.1
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
54.0
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
53.9
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
53.7
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
53.7
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
53.7
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
53.4
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
53.0
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
52.2
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
51.6
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
51.6
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
51.2
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
51.2
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
50.9
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
50.4
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
50.2
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
50.1
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
50.0
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
49.3
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
49.2
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
49.1
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
49.1
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
48.8
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
48.8
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
48.2
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
46.7
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
46.6
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
46.2
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
45.9
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
45.8
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
45.3
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
44.7
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
44.3
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
44.2
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
44.2
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
43.5
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
43.4
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
42.9
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
42.5
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
42.5
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
42.0
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
41.1
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
41.0
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
40.7
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
40.4
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
40.1
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
40.0
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
39.7
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
39.4
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
39.4
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
39.3
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
39.3
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
38.9
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
38.7
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
38.6
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
38.4
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
38.1
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
38.0
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
37.9
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
37.8
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
37.7
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
37.6
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
37.6
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
37.5
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
37.4
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
37.1
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
37.1
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
36.7
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
36.7
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
35.1
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
35.1
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
35.1
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
35.1
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
34.2
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
34.2
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
34.1
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
34.1
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
33.5
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
33.4
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
33.2
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
33.1
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
32.9
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
32.1
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
31.4
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
31.3
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
30.6
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
29.9
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
29.8
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
29.6
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
29.3
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
28.9
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
27.3
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
27.3
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
27.1
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
26.7
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
25.9
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
25.9
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
25.5
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
25.2
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
25.2
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
24.9
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
24.9
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
24.1
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
23.4
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
22.9
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
22.4
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
22.1
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
21.3
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
21.0
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
20.9
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
20.6
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
19.0
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
18.8
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
17.1
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
13.5
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SDF2L1 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
43.5
Number of samples
231
Samples
Sample
Description
TPM
DO45125
0 years, male, NA, stage:3, alive, 1680 days
169.4
DO45092
0 years, male, NA, stage:4, dead, 1200 days
150.4
DO23526
0 years, male, NA, stage:3, alive, 1050 days
138.8
DO45159
0 years, male, NA, stage:3, alive, 1470 days
126.7
DO50806
0 years, male, NA, stage:4, alive, 540 days
124.9
DO50839
0 years, female, NA, stage:3, alive, 330 days
118.4
DO23521
0 years, male, NA, stage:3, alive, 1110 days
116.3
DO45119
0 years, male, NA, stage:3, dead, 510 days
111.9
DO48697
0 years, female, NA, stage:2, dead, 810 days
107.5
DO50811
0 years, male, NA, stage:1, alive, 450 days
106.9
DO45161
0 years, male, NA, stage:2, dead, 540 days
102.7
DO45241
0 years, male, NA, stage:1, alive, 1080 days
100.2
DO45209
0 years, male, NA, stage:4, alive, 1350 days
98.4
DO50840
0 years, male, NA, stage:2, alive, 330 days
90.8
DO45185
0 years, male, NA, stage:2, alive, 600 days
88.6
DO48747
0 years, male, NA, stage:3, alive, 540 days
88.4
DO23510
0 years, female, NA, stage:2, alive, 870 days
87.5
DO45263
0 years, male, NA, stage:3, dead, 270 days
85.1
DO45273
0 years, male, NA, stage:2, alive, 480 days
84.2
DO45299
0 years, female, NA, stage:1, alive, 1440 days
81.5
DO45115
0 years, male, NA, stage:2, alive, 840 days
80.6
DO48730
0 years, female, NA, stage:2, alive, 630 days
78.0
DO23515
0 years, male, NA, stage:2, alive, 1230 days
77.1
DO45155
0 years, male, NA, stage:2, alive, 2160 days
75.8
DO23508
0 years, female, NA, stage:2, alive, 390 days
75.6
DO45095
0 years, male, NA, stage:2, alive, 1620 days
74.7
DO23519
0 years, male, NA, stage:3, alive, 630 days
74.5
DO48682
0 years, female, NA, stage:3, dead, 120 days
74.0
DO50813
0 years, male, NA, stage:2, alive, 420 days
73.5
DO45297
0 years, female, NA, stage:4, dead, 1260 days
72.7
DO23516
0 years, male, NA, stage:3, dead, 20 days
70.7
DO45217
0 years, female, NA, stage:3, dead, 270 days
70.4
DO45131
0 years, male, NA, stage:4, dead, 360 days
69.6
DO50805
0 years, male, NA, stage:2, alive, 690 days
68.8
DO50815
0 years, male, NA, stage:3, alive, 150 days
68.5
DO45245
0 years, female, NA, stage:2, dead, 240 days
68.3
DO50809
0 years, male, NA, stage:3, dead, 720 days
67.8
DO48737
0 years, male, NA, stage:1, alive, 720 days
67.8
DO50776
0 years, male, NA, stage:1, alive, 690 days
67.7
DO48701
0 years, male, NA, stage:2, alive, 780 days
66.8
DO45203
0 years, female, NA, stage:2, alive, 1170 days
66.3
DO23518
0 years, male, NA, stage:2, alive, 1320 days
65.0
DO50855
0 years, male, NA, stage:2, alive, 570 days
64.5
DO45096
0 years, male, NA, stage:2, dead, 1290 days
64.4
DO45117
0 years, female, NA, stage:2, dead, 1110 days
63.2
DO45143
0 years, male, NA, stage:3, alive, 1290 days
61.8
DO23512
0 years, male, NA, stage:1, alive, 1260 days
60.4
DO48717
0 years, male, NA, stage:4, dead, 180 days
59.9
DO48700
0 years, female, NA, stage:2, alive, 810 days
59.5
DO45243
0 years, female, NA, stage:3, alive, 930 days
59.2
DO45137
0 years, male, NA, stage:1, alive, 1320 days
58.9
DO45199
0 years, female, NA, stage:2, alive, 1350 days
58.4
DO50825
0 years, male, NA, stage:2, alive, 390 days
58.4
DO45289
0 years, female, NA, stage:3, alive, 360 days
58.3
DO45099
0 years, male, NA, stage:3, alive, 1590 days
58.2
DO23540
0 years, male, NA, stage:1, alive, 750 days
57.4
DO45153
0 years, female, NA, stage:2, alive, 1380 days
57.3
DO48725
0 years, male, NA, stage:1, alive, 780 days
56.6
DO50798
0 years, male, NA, stage:3, dead, 30 days
56.6
DO45219
0 years, male, NA, stage:2, alive, 1080 days
55.9
DO45277
0 years, male, NA, stage:3, alive, 600 days
55.9
DO45257
0 years, male, NA, stage:3, alive, 810 days
55.7
DO45225
0 years, male, NA, stage:1, alive, 1050 days
54.6
DO23525
0 years, male, NA, stage:4, alive, 1050 days
54.4
DO50783
0 years, male, NA, stage:3, alive, 480 days
54.2
DO45237
0 years, male, NA, stage:2, alive, 900 days
53.9
DO23511
0 years, female, NA, stage:3, dead, 180 days
53.3
DO227801
0 years, female, NA, stage:1, alive, 660 days
52.3
DO45275
0 years, male, NA, stage:3, dead, 10 days
51.8
DO45239
0 years, male, NA, stage:2, alive, 870 days
51.5
DO45103
0 years, male, NA, stage:3, alive, 450 days
51.1
DO45101
0 years, male, NA, stage:2, alive, 1680 days
50.6
DO48759
0 years, male, NA, stage:3, alive, 720 days
50.5
DO50814
0 years, male, NA, stage:3, alive, 420 days
50.1
DO45221
0 years, female, NA, stage:4, dead, 390 days
49.1
DO45191
0 years, female, NA, stage:2, alive, 1200 days
47.9
DO45113
0 years, male, NA, stage:3, alive, 1560 days
47.8
DO45183
0 years, female, NA, stage:2, dead, 570 days
46.2
DO45107
0 years, female, NA, stage:2, alive, 1710 days
45.9
DO23539
0 years, male, NA, stage:1, alive, 1110 days
45.7
DO45097
0 years, male, NA, stage:3, alive, 1620 days
45.5
DO48733
0 years, male, NA, stage:2, alive, 600 days
44.7
DO48693
0 years, male, NA, stage:2, alive, 900 days
42.4
DO45145
0 years, male, NA, stage:3, dead, 60 days
42.1
DO45173
0 years, male, NA, stage:3, alive, 1170 days
41.7
DO48743
0 years, female, NA, stage:2, alive, 570 days
41.5
DO45229
0 years, male, NA, stage:1, alive, 990 days
41.5
DO45255
0 years, male, NA, stage:3, alive, 720 days
41.2
DO48723
0 years, male, NA, stage:1, alive, 600 days
41.0
DO45169
0 years, male, NA, stage:3, alive, 1350 days
41.0
DO23532
0 years, female, NA, stage:1, alive, 960 days
40.8
DO45253
0 years, male, NA, stage:2, alive, 870 days
40.8
DO45165
0 years, male, NA, stage:2, alive, 690 days
40.7
DO48760
0 years, female, NA, stage:2, alive, 690 days
40.6
DO50857
0 years, male, NA, stage:2, alive, 210 days
40.1
DO45135
0 years, male, NA, stage:1, alive, 1410 days
39.2
DO23524
0 years, female, NA, stage:2, alive, 1050 days
39.0
DO45123
0 years, female, NA, stage:2, dead, 570 days
38.6
DO45267
0 years, male, NA, stage:3, dead, 570 days
38.6
DO23533
0 years, male, NA, stage:2, alive, 900 days
38.2
DO45121
0 years, male, NA, stage:3, alive, 1530 days
38.1
DO45207
0 years, male, NA, stage:1, alive, 1050 days
38.0
DO45269
0 years, male, NA, stage:3, alive, 750 days
37.7
DO45261
0 years, male, NA, stage:3, alive, 990 days
37.4
DO227643
0 years, male, NA, stage:2, alive, 1260 days
36.7
DO45163
0 years, male, NA, stage:2, alive, 960 days
36.6
DO50791
0 years, female, NA, stage:1, dead, 480 days
36.5
DO48712
0 years, male, NA, stage:2, alive, 810 days
36.3
DO45301
0 years, male, NA, stage:2, dead, 1440 days
36.1
DO23546
0 years, male, NA, stage:2, alive, 1050 days
35.7
DO50808
0 years, male, NA, stage:2, alive, 570 days
35.4
DO45177
0 years, female, NA, stage:3, alive, 1260 days
35.4
DO45231
0 years, male, NA, stage:2, alive, 930 days
35.4
DO23534
0 years, male, NA, stage:2, alive, 840 days
35.0
DO23514
0 years, male, NA, stage:2, alive, 1290 days
34.5
DO50829
0 years, male, NA, stage:3, alive, 570 days
34.3
DO48741
0 years, male, NA, stage:3, alive, 240 days
34.3
DO23529
0 years, male, NA, stage:4, alive, 930 days
34.3
DO45283
0 years, male, NA, stage:3, alive, 510 days
34.2
DO50819
0 years, female, NA, stage:2, alive, 510 days
34.0
DO45215
0 years, male, NA, stage:2, alive, 1170 days
33.9
DO45091
0 years, male, NA, stage:2, dead, 1320 days
33.6
DO45109
0 years, male, NA, stage:2, alive, 1590 days
33.5
DO23549
0 years, male, NA, stage:3, alive, 990 days
33.3
DO48672
0 years, male, NA, stage:2, alive, 450 days
33.3
DO45093
0 years, male, NA, stage:2, dead, 720 days
33.2
DO45139
0 years, male, NA, stage:3, alive, 1320 days
33.1
DO48742
0 years, male, NA, stage:2, alive, 600 days
33.1
DO45281
0 years, male, NA, stage:4, alive, 750 days
33.1
DO45307
0 years, female, NA, stage:4, dead, 240 days
32.9
DO50822
0 years, male, NA, stage:2, alive, 510 days
32.4
DO45285
0 years, male, NA, stage:3, alive, 480 days
32.3
DO48736
0 years, female, NA, stage:1, alive, 600 days
32.2
DO48715
0 years, female, NA, stage:2, dead, 690 days
32.2
DO48704
0 years, female, NA, stage:3, alive, 750 days
32.1
DO45205
0 years, female, NA, stage:2, dead, 90 days
31.9
DO23527
0 years, male, NA, stage:1, alive, 1050 days
31.8
DO50778
0 years, male, NA, stage:4, alive, 630 days
31.8
DO45171
0 years, male, NA, stage:3, alive, 600 days
31.7
DO50802
0 years, male, NA, stage:2, alive, 930 days
31.7
DO50844
0 years, male, NA, stage:4, alive, 300 days
31.5
DO45223
0 years, male, NA, stage:4, alive, 1020 days
31.4
DO45127
0 years, male, NA, stage:3, dead, 420 days
31.0
DO45141
0 years, male, NA, stage:2, alive, 1320 days
30.9
DO50850
0 years, male, NA, stage:3, alive, 720 days
30.8
DO23535
0 years, male, NA, stage:1, alive, 960 days
30.8
DO45167
0 years, male, NA, stage:2, dead, 1440 days
30.7
DO50816
0 years, male, NA, stage:2, alive, 390 days
30.5
DO48751
0 years, male, NA, stage:2, dead, 480 days
30.4
DO50785
0 years, male, NA, stage:4, dead, 90 days
30.4
DO45213
0 years, male, NA, stage:1, alive, 1200 days
30.1
DO50845
0 years, male, NA, stage:3, alive, 210 days
30.0
DO50804
0 years, male, NA, stage:2, alive, 720 days
29.8
DO48716
0 years, male, NA, stage:2, alive, 720 days
29.0
DO48727
0 years, female, NA, stage:2, dead, 390 days
28.9
DO45193
0 years, female, NA, stage:4, dead, 120 days
28.8
DO45094
0 years, male, NA, stage:3, alive, 1650 days
28.7
DO50789
0 years, female, NA, stage:2, alive, 570 days
28.6
DO48720
0 years, female, NA, stage:2, alive, 570 days
28.5
DO45259
0 years, male, NA, stage:3, alive, 330 days
28.1
DO45129
0 years, male, NA, stage:3, alive, 1470 days
27.7
DO23551
0 years, male, NA, stage:3, dead, 150 days
27.6
DO48746
0 years, male, NA, stage:3, alive, 570 days
27.6
DO50799
0 years, female, NA, stage:2, alive, 540 days
26.9
DO50793
0 years, male, NA, stage:4, alive, 540 days
26.9
DO45287
0 years, male, NA, stage:1, alive, 390 days
26.9
DO48728
0 years, female, NA, stage:2, alive, 150 days
26.6
DO50807
0 years, male, NA, stage:1, alive, 540 days
26.5
DO50803
0 years, female, NA, stage:1, alive, 540 days
26.3
DO45251
0 years, female, NA, stage:2, alive, 900 days
25.9
DO45105
0 years, male, NA, stage:1, alive, 1680 days
25.8
DO48681
0 years, male, NA, stage:2, alive, 900 days
25.1
DO48761
0 years, male, NA, stage:2, alive, 870 days
25.1
DO45197
0 years, male, NA, stage:2, alive, 1170 days
24.7
DO23513
0 years, male, NA, stage:3, alive, 1200 days
24.3
DO23545
0 years, male, NA, stage:2, dead, 570 days
24.3
DO45187
0 years, female, NA, stage:1, alive, 1260 days
24.0
DO50859
0 years, male, NA, stage:2, alive, 180 days
23.8
DO48695
0 years, male, NA, stage:2, alive, 720 days
23.7
DO45149
0 years, female, NA, stage:2, alive, 1260 days
23.6
DO45133
0 years, male, NA, stage:3, dead, 660 days
23.2
DO45175
0 years, male, NA, stage:2, alive, 1140 days
23.1
DO45227
0 years, female, NA, stage:2, alive, 1020 days
22.8
DO45233
0 years, male, NA, stage:3, alive, 900 days
22.8
DO23547
0 years, male, NA, stage:1, alive, 1020 days
22.6
DO23544
0 years, male, NA, stage:2, alive, 960 days
22.5
DO45179
0 years, female, NA, stage:2, alive, 600 days
22.5
DO50774
0 years, female, NA, stage:2, alive, 720 days
22.3
DO23548
0 years, female, NA, stage:1, alive, 840 days
22.2
DO45265
0 years, male, NA, stage:3, alive, 1020 days
22.1
DO23530
0 years, male, NA, stage:4, dead, 180 days
21.9
DO48679
0 years, male, NA, stage:2, alive, 1200 days
21.5
DO50800
0 years, male, NA, stage:2, alive, 510 days
21.2
DO23537
0 years, male, NA, stage:2, dead, 900 days
21.1
DO45157
0 years, male, NA, stage:2, alive, 1980 days
21.0
DO48674
0 years, male, NA, stage:2, alive, 1260 days
20.3
DO45305
0 years, male, NA, stage:4, alive, 300 days
20.2
DO45249
0 years, male, NA, stage:1, alive, 630 days
20.2
DO23550
0 years, male, NA, stage:1, alive, 990 days
20.2
DO50817
0 years, male, NA, stage:2, alive, 390 days
19.8
DO45201
0 years, male, NA, stage:1, alive, 900 days
19.7
DO48719
0 years, male, NA, stage:2, alive, 690 days
19.7
DO48732
0 years, male, NA, stage:3, alive, 630 days
19.5
DO23528
0 years, female, NA, stage:2, alive, 1020 days
19.3
DO45189
0 years, female, NA, stage:2, alive, 1200 days
19.2
DO48757
0 years, female, NA, stage:3, alive, 480 days
18.5
DO45211
0 years, male, NA, stage:3, alive, 240 days
18.0
DO45247
0 years, female, NA, stage:2, alive, 210 days
17.6
DO50820
0 years, female, NA, stage:3, alive, 510 days
17.1
DO45279
0 years, male, NA, stage:3, alive, 1290 days
17.1
DO50818
0 years, male, NA, stage:2, alive, 510 days
17.1
DO45303
0 years, female, NA, stage:3, alive, 990 days
16.4
DO23536
0 years, male, NA, stage:2, alive, 930 days
16.1
DO23538
0 years, male, NA, stage:2, alive, 450 days
16.1
DO48677
0 years, male, NA, stage:3, alive, 1140 days
15.6
DO48706
0 years, male, NA, stage:2, alive, 870 days
15.3
DO23543
0 years, male, NA, stage:2, alive, 1020 days
15.3
DO23541
0 years, male, NA, stage:2, alive, 930 days
15.1
DO45235
0 years, female, NA, stage:1, alive, 900 days
14.9
DO23517
0 years, male, NA, stage:2, alive, 1200 days
14.4
DO45195
0 years, male, NA, stage:1, alive, 390 days
14.4
DO50787
0 years, male, NA, stage:3, alive, 480 days
14.3
DO23523
0 years, male, NA, stage:3, alive, 1080 days
14.0
DO50832
0 years, male, NA, stage:3, alive, 90 days
13.8
DO23552
0 years, female, NA, stage:1, alive, 810 days
12.6
DO45181
0 years, female, NA, stage:2, alive, 1200 days
12.2
DO23509
0 years, male, NA, stage:3, dead, 780 days
12.0
DO45111
0 years, male, NA, stage:2, alive, 1590 days
10.9
DO23542
0 years, male, NA, stage:3, alive, 960 days
9.9
DO48721
0 years, female, NA, stage:1, alive, 900 days
9.8
DO23531
0 years, female, NA, stage:3, alive, 900 days
8.1
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
357
Tumor
1.3
527
Tumor
1.2
445
Tumor
1.1
523
Tumor
1.0
813
Tumor
0.8
1027
Tumor
0.7
777
Tumor
0.7
227
Tumor
0.7
743
Tumor
0.7
553
Tumor
0.7
1021
Tumor
0.7
147
Tumor
0.7
223
Tumor
0.7
937
Tumor
0.7
697
Tumor
0.6
727
Tumor
0.6
983
Tumor
0.6
387
Tumor
0.6
331
Tumor
0.6
137
Tumor
0.5
435
Tumor
0.5
497
Tumor
0.5
463
Tumor
0.5
171
Tumor
0.5
557
Tumor
0.5
923
Tumor
0.5
443
Tumor
0.5
863
Tumor
0.5
515
Tumor
0.4
1025
Tumor
0.4
285
Tumor
0.4
685
Tumor
0.4
473
Tumor
0.4
487
Tumor
0.4
977
Tumor
0.4
393
Tumor
0.4
481
Tumor
0.4
913
Tumor
0.4
528
Normal
0.4
851
Tumor
0.4
873
Tumor
0.3
755
Tumor
0.3
953
Tumor
0.3
737
Tumor
0.3
814
Normal
0.3
912
Normal
0.3
857
Tumor
0.3
127
Tumor
0.3
218
Normal
0.3
217
Tumor
0.3
571
Tumor
0.3
526
Normal
0.3
525
Tumor
0.3
823
Tumor
0.3
615
Tumor
0.3
975
Tumor
0.3
567
Tumor
0.3
257
Tumor
0.3
911
Tumor
0.3
195
Tumor
0.3
467
Tumor
0.2
981
Tumor
0.2
135
Tumor
0.2
533
Tumor
0.2
355
Tumor
0.2
558
Normal
0.2
925
Tumor
0.2
286
Normal
0.2
723
Tumor
0.2
963
Tumor
0.2
785
Tumor
0.2
313
Tumor
0.2
1043
Tumor
0.2
1044
Normal
0.2
957
Tumor
0.2
433
Tumor
0.2
636
Normal
0.2
385
Tumor
0.2
745
Tumor
0.2
721
Tumor
0.2
696
Normal
0.2
261
Tumor
0.2
271
Tumor
0.1
518
Normal
0.1
277
Tumor
0.1
817
Tumor
0.1
471
Tumor
0.1
554
Normal
0.1
572
Normal
0.1
756
Normal
0.1
477
Tumor
0.1
647
Tumor
0.1
1026
Normal
0.1
926
Normal
0.1
363
Tumor
0.1
862
Normal
0.1
145
Tumor
0.1
568
Normal
0.1
1015
Tumor
0.1
142
Normal
0.1
724
Normal
0.1
922
Normal
0.1
462
Normal
0.1
915
Tumor
0.1
786
Normal
0.1
161
Tumor
0.1
447
Tumor
0.1
191
Tumor
0.1
1016
Normal
0.1
392
Normal
0.1
493
Tumor
0.1
284
Normal
0.1
231
Tumor
0.1
212
Normal
0.1
446
Normal
0.1
436
Normal
0.1
514
Normal
0.1
665
Tumor
0.1
663
Tumor
0.1
221
Tumor
0.0
924
Normal
0.0
222
Normal
0.0
742
Normal
0.0
537
Tumor
0.0
474
Normal
0.0
641
Tumor
0.0
327
Tumor
0.0
778
Normal
0.0
964
Normal
0.0
536
Normal
0.0
955
Tumor
0.0
524
Normal
0.0
228
Normal
0.0
918
Normal
0.0
746
Normal
0.0
187
Tumor
0.0
112
Tumor
0.0
666
Normal
0.0
618
Normal
0.0
412
Normal
0.0
213
Tumor
0.0
351
Tumor
0.0
564
Normal
0.0
343
Tumor
0.0
356
Normal
0.0
432
Normal
0.0
686
Normal
0.0
368
Normal
0.0
451
Tumor
0.0
185
Tumor
0.0
431
Tumor
0.0
574
Normal
0.0
482
Normal
0.0
866
Normal
0.0
1014
Normal
0.0
867
Tumor
0.0
884
Normal
0.0
123
Tumor
0.0
966
Normal
0.0
224
Normal
0.0
395
Tumor
0.0
563
Tumor
0.0
141
Tumor
0.0
1022
Normal
0.0
944
Normal
0.0
434
Normal
0.0
728
Normal
0.0
921
Tumor
0.0
648
Normal
-0.1
738
Normal
-0.1
421
Tumor
-0.1
472
Normal
-0.1
968
Normal
-0.1
864
Normal
-0.1
426
Normal
-0.1
642
Normal
-0.1
534
Normal
-0.1
131
Tumor
-0.1
211
Tumor
-0.1
461
Tumor
-0.1
698
Normal
-0.1
952
Normal
-0.1
258
Normal
-0.1
358
Normal
-0.1
535
Tumor
-0.1
917
Tumor
-0.1
427
Tumor
-0.1
376
Normal
-0.1
1041
Tumor
-0.1
138
Normal
-0.1
1028
Normal
-0.1
714
Normal
-0.1
616
Normal
-0.1
628
Normal
-0.1
874
Normal
-0.1
1046
Normal
-0.1
396
Normal
-0.1
662
Normal
-0.1
367
Tumor
-0.1
951
Tumor
-0.1
353
Tumor
-0.1
865
Tumor
-0.1
364
Normal
-0.1
452
Normal
-0.1
916
Normal
-0.1
868
Normal
-0.1
984
Normal
-0.1
546
Normal
-0.1
494
Normal
-0.1
411
Tumor
-0.1
414
Normal
-0.1
383
Tumor
-0.1
466
Normal
-0.1
1045
Tumor
-0.1
938
Normal
-0.1
883
Tumor
-0.1
113
Tumor
-0.1
976
Normal
-0.1
423
Tumor
-0.1
861
Tumor
-0.1
492
Normal
-0.1
852
Normal
-0.1
314
Normal
-0.1
111
Normal
-0.1
956
Normal
-0.1
882
Normal
-0.1
262
Normal
-0.2
664
Normal
-0.2
878
Normal
-0.2
635
Tumor
-0.2
1042
Normal
-0.2
468
Normal
-0.2
415
Tumor
-0.2
483
Tumor
-0.2
982
Normal
-0.2
124
Normal
-0.2
516
Normal
-0.2
448
Normal
-0.2
816
Normal
-0.2
978
Normal
-0.2
148
Normal
-0.2
413
Tumor
-0.2
573
Tumor
-0.2
394
Normal
-0.2
272
Normal
-0.2
858
Normal
-0.2
954
Normal
-0.2
672
Normal
-0.2
824
Normal
-0.2
914
Normal
-0.2
172
Normal
-0.2
214
Normal
-0.2
162
Normal
-0.2
384
Normal
-0.2
232
Normal
-0.2
1032
Normal
-0.2
877
Tumor
-0.2
484
Normal
-0.2
341
Tumor
-0.2
545
Tumor
-0.2
815
Tumor
-0.2
128
Normal
-0.2
332
Normal
-0.2
416
Normal
-0.2
328
Normal
-0.2
713
Tumor
-0.2
661
Tumor
-0.2
741
Tumor
-0.2
361
Tumor
-0.2
386
Normal
-0.2
283
Tumor
-0.2
464
Normal
-0.2
136
Normal
-0.2
267
Tumor
-0.2
716
Normal
-0.2
196
Normal
-0.3
188
Normal
-0.3
366
Normal
-0.3
352
Normal
-0.3
192
Normal
-0.3
114
Normal
-0.3
444
Normal
-0.3
312
Normal
-0.3
498
Normal
-0.3
186
Normal
-0.3
278
Normal
-0.3
1031
Tumor
-0.3
132
Normal
-0.3
425
Tumor
-0.3
298
Normal
-0.3
455
Tumor
-0.3
722
Normal
-0.3
388
Normal
-0.3
422
Normal
-0.3
818
Normal
-0.3
311
Tumor
-0.3
715
Tumor
-0.3
943
Tumor
-0.3
465
Tumor
-0.3
424
Normal
-0.3
958
Normal
-0.3
126
Normal
-0.3
617
Tumor
-0.3
488
Normal
-0.3
513
Tumor
-0.4
268
Normal
-0.4
967
Tumor
-0.4
456
Normal
-0.4
365
Tumor
-0.4
478
Normal
-0.4
362
Normal
-0.4
342
Normal
-0.4
354
Normal
-0.4
344
Normal
-0.4
517
Tumor
-0.4
428
Normal
-0.4
538
Normal
-0.4
695
Tumor
-0.4
146
Normal
-0.4
297
Tumor
-0.5
391
Tumor
-0.5
744
Normal
-0.5
881
Tumor
-0.5
375
Tumor
-0.5
671
Tumor
-0.6
491
Tumor
-0.6
1013
Tumor
-0.6
627
Tumor
-0.6
125
Tumor
-0.7
965
Tumor
-0.7
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
