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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
196.3
nTPM
HPA Brain:
229.3
nTPM
GTEx:
196.3
nTPM
FANTOM5:
282.6
Scaled Tags Per Million
Pig:
197.7
nTPM
Mouse:
7.5
nTPM
Allen mouse:
0.1
Expression energy
MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
229.3
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 166.6
1830
Male, age 51, unknown
204.2
2666
Male, age 74, left hemisphere
201.2
1833
Male, age 53, unknown
189.9
2586
Male, age 75, left hemisphere
189.2
2019
Male, age 18, unknown
183.6
1870
Female, age 42, unknown
179.2
2411
Female, age 72, unknown
164.9
2828
Female, age 72, unknown
148.2
1827
Male, age 72, unknown
105.9
2219
Male, age 76, both hemispheres
99.3
Dorsal raphe nucleus nTPM: 112.6
2750
Male, age 76, both hemispheres
201.8
1828
Male, age 53, unknown
115.9
2016
Female, age 72, unknown
109.0
2047
Male, age 72, unknown
79.5
2298
Female, age 72, unknown
56.9
Inferior colliculus nTPM: 109.1
1890
Male, age 53, unknown
124.1
1848
Female, age 42, unknown
108.6
2849
Male, age 72, unknown
106.1
2097
Female, age 72, unknown
97.7
Median raphe nucleus nTPM: 91.8
2220
Male, age 76, midline
91.8
Periaquaductal grey, anterior nTPM: 90.4
2502
Female, age 75, unknown
107.4
1947
Male, age 18, unknown
93.2
1795
Male, age 51, unknown
70.5
Periaquaductal grey, dorsal nTPM: 71.3
2464
Female, age 72, unknown
110.9
1831
Male, age 72, unknown
86.9
1840
Male, age 53, unknown
44.9
2850
Male, age 76, both hemispheres
42.5
Periaquaductal grey, lateral nTPM: 65.8
2053
Male, age 18, unknown
90.1
2272
Male, age 74, both hemispheres
65.3
2140
Male, age 76, both hemispheres
41.9
Pretectal area nTPM: 92.0
1815
Male, age 53, unknown
144.6
1817
Female, age 42, unknown
127.3
2316
Male, age 76, right hemisphere
116.6
2007
Male, age 72, unknown
110.4
2407
Male, age 75, both hemispheres
108.9
2825
Male, age 18, unknown
96.4
1944
Female, age 72, unknown
69.7
1816
Male, age 51, unknown
63.9
2667
Female, age 75, unknown
62.6
2224
Female, age 72, unknown
60.1
2273
Male, age 74, both hemispheres
51.2
Red nucleus nTPM: 229.3
2823
Male, age 76, right hemisphere
271.3
1865
Male, age 51, unknown
262.7
1821
Female, age 72, unknown
261.4
1904
Male, age 53, unknown
256.9
2588
Male, age 74, left hemisphere
250.7
2769
Male, age 72, unknown
234.0
2227
Male, age 72, unknown
225.8
2503
Female, age 72, unknown
223.2
1954
Female, age 42, unknown
215.9
2785
Male, age 18, unknown
195.3
2725
Female, age 75, unknown
181.3
2584
Male, age 75, left hemisphere
172.6
Substantia nigra nTPM: 122.1
2665
Male, age 74, both hemispheres
144.7
1851
Male, age 51, unknown
139.7
2590
Female, age 75, unknown
136.3
2583
Male, age 75, right hemisphere
133.2
1889
Female, age 72, unknown
131.1
2409
Female, age 72, unknown
129.6
2699
Male, age 18, unknown
115.3
2241
Male, age 72, unknown
99.8
1916
Female, age 42, unknown
96.3
1941
Male, age 53, unknown
95.2
Superior colliculus nTPM: 127.6
1995
Male, age 72, unknown
174.1
1913
Female, age 42, unknown
172.7
2668
Female, age 75, unknown
155.6
1895
Male, age 76, right hemisphere
149.2
2587
Male, age 74, left hemisphere
148.4
1839
Male, age 51, unknown
136.2
2664
Male, age 75, both hemispheres
94.1
1796
Male, age 53, unknown
90.0
2261
Male, age 18, unknown
78.8
2087
Female, age 72, unknown
77.4
Ventral tegmental area nTPM: 119.7
2223
Female, age 72, unknown
155.1
2410
Female, age 72, unknown
148.7
1942
Male, age 51, unknown
106.8
1915
Female, age 42, unknown
106.6
2021
Male, age 53, unknown
103.7
2218
Male, age 76, both hemispheres
97.0
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
196.3
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 196.3
Samples: 139
Max nTPM: 454.0
Min nTPM: 56.9
Std nTPM: 91.3
Median nTPM: 175.5
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
454.0
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
447.4
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
438.7
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
398.0
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
395.9
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
386.6
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
386.3
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
382.3
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
379.7
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
375.3
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
374.8
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
369.7
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
356.5
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
347.0
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
342.7
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
319.7
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
316.9
GTEX-18464-0011-R2a-SM-731AL
50-59 years, male
316.8
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
308.0
GTEX-1IKOH-0011-R2a-SM-CMKHO
60-69 years, female
304.9
GTEX-OXRO-0011-R2A-SM-3NB1W
60-69 years, female
301.7
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
299.0
GTEX-NL4W-0011-R2a-SM-2I5GV
50-59 years, male
294.9
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
293.0
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
274.0
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
272.8
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
269.5
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
268.4
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
267.7
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
266.0
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
264.9
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
259.8
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
253.3
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
253.2
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
246.1
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
243.7
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
243.3
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
231.1
GTEX-T5JC-0011-R2A-SM-32PLZ
20-29 years, male
229.9
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
228.6
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
227.6
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
225.7
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
223.9
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
213.2
GTEX-N7MT-0011-R2a-SM-2I3GI
60-69 years, female
212.5
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
210.6
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
206.2
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
206.0
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
204.5
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
204.1
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
202.7
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
200.8
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
199.5
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
197.4
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
196.7
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
196.5
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
196.3
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
195.9
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
194.8
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
191.1
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
190.9
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
190.6
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
189.7
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
184.3
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
182.6
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
181.6
GTEX-PWO3-0011-R2A-SM-2S1OX
60-69 years, female
180.5
GTEX-NPJ8-0011-R2a-SM-2TC6M
40-49 years, male
179.2
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
177.0
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
175.5
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
174.0
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
171.9
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
171.6
GTEX-N7MS-0011-R2a-SM-2HML6
60-69 years, male
171.6
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
169.4
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
169.0
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
168.7
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
168.7
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
168.7
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
168.3
GTEX-P44G-0011-R2A-SM-2XCD2
30-39 years, male
167.2
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
166.4
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
163.3
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
159.9
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
158.7
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
158.2
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
154.0
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
153.8
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
150.0
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
148.7
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
147.4
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
146.7
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
145.6
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
141.7
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
141.6
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
140.8
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
138.9
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
138.0
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
138.0
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
136.9
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
131.4
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
127.9
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
126.6
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
125.9
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
124.9
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
122.8
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
121.9
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
120.1
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
119.0
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
118.9
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
116.4
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
115.8
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
115.3
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
114.8
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
114.7
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
113.6
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
111.3
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
109.6
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
109.5
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
108.8
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
107.6
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
106.7
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
106.1
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
103.8
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
102.9
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
101.7
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
97.0
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
87.0
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
83.2
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
82.9
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
82.8
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
81.6
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
80.4
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
75.3
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
74.6
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
69.7
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
60.4
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
59.8
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
56.9
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MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
7.5
Mouse sample
Sample description
nTPM
Midbrain nTPM: 7.6
Samples: 4
Max nTPM: 8.8
Min nTPM: 6.7
Sample A
Male
8.8
Sample B
Male
7.8
Sample C
Female
6.9
Sample D
Female
6.7
MIDBRAIN - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.