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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
HPA Brain:
319.2
nTPM
FANTOM5:
548.1
Scaled Tags Per Million
Pig:
172.4
nTPM
Allen mouse:
0.1
Expression energy
PONS - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
319.2
Sample id
Sample description
nTPM
Anterior cochlear nucleus, ventral nTPM: 209.1
2090
Male, age 80, both hemispheres
276.1
2188
Female, age 91, both hemispheres
224.9
2301
Female, age 85, both hemispheres
205.9
1984
Male, age 76, both hemispheres
129.5
Dorsal cochlear nucleus nTPM: 199.1
2378
Male, age 80, both hemispheres
255.9
2187
Female, age 91, both hemispheres
211.1
2370
Male, age 61, both hemispheres
199.2
2802
Male, age 74, right hemisphere
174.0
2058
Male, age 76, both hemispheres
155.1
Dorsal tegmental nucleus nTPM: 290.8
2358
Male, age 61, both hemispheres
635.6
1936
Male, age 76, left hemisphere
190.1
2326
Male, age 74, both hemispheres
183.9
2083
Male, age 80, both hemispheres
153.6
Dorsolateral tegmental area nTPM: 278.0
2337
Male, age 61, both hemispheres
754.2
2360
Male, age 74, both hemispheres
186.8
2654
Male, age 80, both hemispheres
175.7
2141
Male, age 76, both hemispheres
163.1
2751
Female, age 85, both hemispheres
110.3
Kolliker-Fuse nucleus nTPM: 204.1
2315
Male, age 76, right hemisphere
253.0
2793
Female, age 91, left hemisphere
196.6
2163
Male, age 80, both hemispheres
162.7
Lateral lemniscal nuclei nTPM: 131.5
2746
Female, age 85, left hemisphere
146.3
2320
Female, age 91, left hemisphere
135.2
2169
Male, age 76, both hemispheres
132.3
2036
Male, age 80, both hemispheres
123.6
2453
Male, age 74, right hemisphere
120.2
Lateral parabrachial nucleus nTPM: 248.1
2792
Male, age 76, both hemispheres
313.3
2790
Male, age 61, both hemispheres
256.1
2013
Male, age 80, both hemispheres
246.4
2139
Female, age 85, right hemisphere
176.5
Lateral vestibular nucleus nTPM: 200.4
2311
Male, age 80, both hemispheres
268.8
2184
Male, age 76, both hemispheres
132.0
Locus coeruleus nTPM: 149.5
2162
Male, age 80, both hemispheres
168.1
2123
Female, age 91, both hemispheres
165.9
2317
Female, age 72, unknown
163.6
2720
Male, age 74, both hemispheres
155.2
2788
Male, age 74, unknown
151.9
1980
Male, age 76, both hemispheres
137.0
2014
Male, age 55, unknown
105.0
Medial parabrachial nucleus nTPM: 178.8
2854
Male, age 80, both hemispheres
239.6
2156
Male, age 61, both hemispheres
224.1
2786
Male, age 76, both hemispheres
166.4
2170
Female, age 91, both hemispheres
163.9
2463
Female, age 85, right hemisphere
100.0
Medial periolivary nuclei nTPM: 169.8
2081
Male, age 80, both hemispheres
235.7
2458
Female, age 91, both hemispheres
177.4
2791
Male, age 74, right hemisphere
177.4
2063
Male, age 76, both hemispheres
150.5
2171
Female, age 85, both hemispheres
108.0
Motor facial nucleus nTPM: 163.6
2126
Male, age 61, both hemispheres
243.5
2697
Female, age 85, both hemispheres
205.1
2365
Male, age 74, right hemisphere
186.3
2062
Male, age 76, both hemispheres
127.0
2795
Female, age 91, both hemispheres
122.9
2327
Male, age 80, both hemispheres
96.5
Motor trigeminal nucleus nTPM: 197.4
2335
Male, age 61, both hemispheres
326.2
2321
Female, age 91, both hemispheres
184.1
2560
Male, age 74, both hemispheres
166.4
2309
Male, age 76, both hemispheres
157.4
2079
Male, age 80, both hemispheres
152.8
Nuclei of the trapezoid body nTPM: 129.0
2166
Male, age 80, both hemispheres
160.8
1983
Male, age 76, both hemispheres
160.0
2368
Female, age 91, both hemispheres
117.7
2159
Male, age 61, both hemispheres
108.1
2735
Female, age 85, both hemispheres
98.6
Nucleus raphe magnus nTPM: 146.3
2051
Male, age 76, both hemispheres
282.7
2459
Female, age 91, both hemispheres
135.9
2328
Male, age 80, both hemispheres
135.0
2455
Male, age 74, both hemispheres
120.8
2172
Female, age 85, both hemispheres
112.5
2160
Male, age 61, both hemispheres
90.5
Paramedian reticular nucleus nTPM: 155.2
2052
Male, age 76, both hemispheres
193.6
2313
Male, age 61, both hemispheres
150.5
2057
Male, age 80, both hemispheres
147.8
2050
Female, age 85, both hemispheres
128.8
Pedunculopontine tegmental nucleus nTPM: 319.2
2338
Male, age 61, both hemispheres
691.4
2334
Male, age 80, both hemispheres
161.3
1921
Female, age 85, both hemispheres
104.8
Pontine nuclei nTPM: 147.4
2115
Male, age 80, left hemisphere
264.3
2319
Female, age 91, both hemispheres
180.7
2109
Female, age 72, unknown
168.2
1968
Male, age 76, left hemisphere
142.4
2787
Female, age 85, both hemispheres
120.3
1863
Male, age 55, unknown
117.0
2454
Male, age 74, left hemisphere
96.9
2727
Male, age 61, right hemisphere
89.3
Pontine raphe nucleus nTPM: 137.6
2853
Male, age 76, midline
166.5
2122
Female, age 85, midline
108.6
Posteroventral cochlear nucleus nTPM: 216.1
2341
Male, age 80, both hemispheres
294.7
2135
Female, age 91, both hemispheres
276.2
2371
Male, age 61, both hemispheres
210.2
2070
Male, age 76, both hemispheres
178.9
2752
Female, age 85, both hemispheres
120.4
Principal sensory trigeminal nucleus nTPM: 148.3
2367
Female, age 91, left hemisphere
175.4
2324
Male, age 76, both hemispheres
168.0
2008
Male, age 80, left hemisphere
132.9
2158
Male, age 61, both hemispheres
117.1
Reticular pontine nucleus, caudal nTPM: 144.5
2092
Male, age 76, both hemispheres
200.2
2559
Male, age 74, both hemispheres
148.1
2457
Female, age 91, both hemispheres
137.0
2332
Male, age 80, right hemisphere
92.8
Reticular pontine nucleus, oral nTPM: 129.0
2167
Male, age 76, both hemispheres
155.2
1939
Male, age 80, both hemispheres
150.8
2366
Female, age 91, both hemispheres
119.3
2361
Male, age 74, both hemispheres
114.6
2012
Female, age 85, both hemispheres
105.0
Reticulotegmental nucleus nTPM: 149.5
2333
Male, age 80, both hemispheres
175.0
2322
Female, age 91, both hemispheres
145.9
2452
Male, age 74, both hemispheres
142.4
2325
Male, age 76, both hemispheres
134.9
Spinal trigeminal nucleus, oral nTPM: 155.2
2164
Male, age 80, both hemispheres
194.7
1978
Male, age 76, both hemispheres
159.3
2737
Female, age 85, both hemispheres
111.7
Subcoeruleus area nTPM: 151.4
2451
Male, age 74, both hemispheres
170.2
2089
Male, age 76, left hemisphere
165.1
1958
Male, age 80, both hemispheres
149.9
2323
Female, age 91, left hemisphere
142.3
2369
Female, age 85, left hemisphere
129.3
Superior olive nTPM: 166.8
2020
Male, age 76, both hemispheres
207.7
2561
Female, age 91, both hemispheres
200.2
2364
Male, age 74, right hemisphere
182.8
2329
Male, age 80, right hemisphere
144.0
1875
Female, age 85, both hemispheres
99.4
Ventral periolivary nuclei nTPM: 165.6
2023
Male, age 76, both hemispheres
200.3
2794
Female, age 91, left hemisphere
198.1
2165
Male, age 80, both hemispheres
136.7
2130
Female, age 85, both hemispheres
127.2
Ventrolateral tegmental area, A5 NE cell group nTPM: 203.1
2359
Male, age 61, both hemispheres
406.4
2161
Male, age 80, both hemispheres
196.2
1959
Male, age 76, both hemispheres
183.5
2840
Female, age 85, both hemispheres
171.3
2449
Male, age 74, both hemispheres
132.9
2456
Female, age 91, both hemispheres
128.0
PONS - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
172.4
Pig sample
Sample description
nTPM
Pons nTPM: 172.4
Samples: 4
Max nTPM: 225.2
Min nTPM: 119.1
Sample A
Female
119.1
Sample B
Female
168.3
Sample C
Male
225.2
Sample D
Male
177.1
PONS - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.