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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
52.7
nTPM
HPA Brain:
246.0
nTPM
GTEx:
52.7
nTPM
FANTOM5:
686.5
Scaled Tags Per Million
Pig:
213.1
nTPM
Mouse:
2.0
nTPM
Allen mouse:
0.1
Expression energy
MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
246.0
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 174.4
2586
Male, age 75, left hemisphere
252.0
2666
Male, age 74, left hemisphere
205.9
1830
Male, age 51, unknown
200.9
2828
Female, age 72, unknown
196.3
1833
Male, age 53, unknown
171.1
1870
Female, age 42, unknown
164.0
2019
Male, age 18, unknown
158.0
1827
Male, age 72, unknown
144.7
2411
Female, age 72, unknown
135.0
2219
Male, age 76, both hemispheres
116.1
Dorsal raphe nucleus nTPM: 190.6
2016
Female, age 72, unknown
257.0
1828
Male, age 53, unknown
200.4
2298
Female, age 72, unknown
182.2
2047
Male, age 72, unknown
174.1
2750
Male, age 76, both hemispheres
139.2
Inferior colliculus nTPM: 157.8
2849
Male, age 72, unknown
177.2
2097
Female, age 72, unknown
158.7
1848
Female, age 42, unknown
150.1
1890
Male, age 53, unknown
145.3
Median raphe nucleus nTPM: 124.5
2220
Male, age 76, midline
124.5
Periaquaductal grey, anterior nTPM: 166.5
2502
Female, age 75, unknown
184.2
1795
Male, age 51, unknown
180.1
1947
Male, age 18, unknown
135.4
Periaquaductal grey, dorsal nTPM: 214.1
1831
Male, age 72, unknown
261.3
2850
Male, age 76, both hemispheres
245.2
1840
Male, age 53, unknown
193.3
2464
Female, age 72, unknown
156.6
Periaquaductal grey, lateral nTPM: 227.8
2140
Male, age 76, both hemispheres
237.8
2053
Male, age 18, unknown
236.1
2272
Male, age 74, both hemispheres
209.6
Pretectal area nTPM: 155.8
2407
Male, age 75, both hemispheres
285.6
2224
Female, age 72, unknown
171.0
2273
Male, age 74, both hemispheres
159.0
2316
Male, age 76, right hemisphere
158.1
2825
Male, age 18, unknown
156.8
1815
Male, age 53, unknown
154.3
1817
Female, age 42, unknown
151.7
1944
Female, age 72, unknown
148.5
2007
Male, age 72, unknown
138.6
2667
Female, age 75, unknown
102.0
1816
Male, age 51, unknown
87.8
Red nucleus nTPM: 190.9
2725
Female, age 75, unknown
318.3
2584
Male, age 75, left hemisphere
288.4
1865
Male, age 51, unknown
233.1
2503
Female, age 72, unknown
205.6
2769
Male, age 72, unknown
178.1
2823
Male, age 76, right hemisphere
175.8
1904
Male, age 53, unknown
174.2
2227
Male, age 72, unknown
167.8
2785
Male, age 18, unknown
161.7
1954
Female, age 42, unknown
154.2
1821
Female, age 72, unknown
128.3
2588
Male, age 74, left hemisphere
105.1
Substantia nigra nTPM: 246.0
2699
Male, age 18, unknown
413.0
2590
Female, age 75, unknown
340.9
2665
Male, age 74, both hemispheres
299.9
2583
Male, age 75, right hemisphere
247.1
1851
Male, age 51, unknown
231.4
1916
Female, age 42, unknown
226.9
2409
Female, age 72, unknown
203.1
1941
Male, age 53, unknown
195.9
2241
Male, age 72, unknown
179.7
1889
Female, age 72, unknown
122.2
Superior colliculus nTPM: 178.9
2664
Male, age 75, both hemispheres
308.2
1913
Female, age 42, unknown
263.8
1995
Male, age 72, unknown
235.0
2587
Male, age 74, left hemisphere
183.2
1839
Male, age 51, unknown
165.6
1796
Male, age 53, unknown
150.8
2087
Female, age 72, unknown
148.1
2261
Male, age 18, unknown
128.4
1895
Male, age 76, right hemisphere
119.9
2668
Female, age 75, unknown
85.8
Ventral tegmental area nTPM: 203.5
2021
Male, age 53, unknown
291.7
1942
Male, age 51, unknown
210.0
1915
Female, age 42, unknown
207.3
2218
Male, age 76, both hemispheres
179.6
2410
Female, age 72, unknown
171.7
2223
Female, age 72, unknown
160.5
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
52.7
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 52.7
Samples: 139
Max nTPM: 298.2
Min nTPM: 4.0
Std nTPM: 53.8
Median nTPM: 34.1
GTEX-PWO3-0011-R2A-SM-2S1OX
60-69 years, female
298.2
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
276.6
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
255.0
GTEX-NL4W-0011-R2a-SM-2I5GV
50-59 years, male
199.2
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
198.8
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
175.4
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
174.0
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
158.4
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
157.6
GTEX-T5JC-0011-R2A-SM-32PLZ
20-29 years, male
144.4
GTEX-NPJ8-0011-R2a-SM-2TC6M
40-49 years, male
132.5
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
131.0
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
124.2
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
116.5
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
114.6
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
114.4
GTEX-N7MT-0011-R2a-SM-2I3GI
60-69 years, female
110.1
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
106.8
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
104.7
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
104.6
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
104.6
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
102.1
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
100.1
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
92.4
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
89.6
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
86.6
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
82.9
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
82.4
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
78.2
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
75.6
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
75.5
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
70.7
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
70.0
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
66.7
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
64.6
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
63.7
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
62.1
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
61.8
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
61.0
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
56.1
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
55.0
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
54.8
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
54.6
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
54.4
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
53.1
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
51.9
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
51.8
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
51.7
GTEX-N7MS-0011-R2a-SM-2HML6
60-69 years, male
51.5
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
51.5
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
49.4
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
49.0
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
46.0
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
42.7
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
42.5
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
42.2
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
41.5
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
39.5
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
39.2
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
39.1
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
38.0
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
37.9
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
37.4
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
35.7
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
35.2
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
34.4
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
34.3
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
34.2
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
34.1
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
34.1
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
32.6
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
32.6
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
32.3
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
32.1
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
32.1
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
31.9
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
31.3
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
31.1
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
31.1
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
30.9
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
30.7
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
29.8
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
29.8
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
28.5
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
28.2
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
27.2
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
26.2
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
25.7
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
25.2
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
25.2
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
25.1
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
25.0
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
24.9
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
24.0
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
23.8
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
22.0
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
20.8
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
20.3
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
20.1
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
19.9
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
19.9
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
19.8
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
18.1
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
18.0
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
17.4
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
17.2
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
17.1
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
17.1
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
16.9
GTEX-OXRO-0011-R2A-SM-3NB1W
60-69 years, female
15.9
GTEX-18464-0011-R2a-SM-731AL
50-59 years, male
15.8
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
14.0
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
13.5
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
13.0
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
12.4
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
11.7
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
11.4
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
11.2
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
11.0
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
10.9
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
10.4
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
10.4
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
10.2
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
9.4
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
9.3
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
8.9
GTEX-1IKOH-0011-R2a-SM-CMKHO
60-69 years, female
8.5
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
8.3
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
7.7
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
7.1
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
7.1
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
6.8
GTEX-P44G-0011-R2A-SM-2XCD2
30-39 years, male
6.7
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
6.4
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
6.2
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
5.4
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
5.4
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
4.7
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
4.0
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MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
2.0
Mouse sample
Sample description
nTPM
Midbrain nTPM: 2.0
Samples: 4
Max nTPM: 2.8
Min nTPM: 1.3
Sample A
Male
2.0
Sample B
Male
2.8
Sample C
Female
1.9
Sample D
Female
1.3
MIDBRAIN - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.