We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
h
m
l
n
Glial cells:
Not detected
Neuronal cells:
Not detected
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
22.7
nTPM
HPA Brain:
144.8
nTPM
GTEx:
22.7
nTPM
FANTOM5:
390.6
Scaled Tags Per Million
Pig:
86.8
nTPM
Mouse:
0.8
nTPM
Allen mouse:
0.1
Expression energy
HIPPOCAMPUS - Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
Antibody HPA003563
Antibody HPA020432
Antibody CAB004209
Glial cells
Not detected
Not detected
Not detected
Neuronal cells
Low
Medium
Not detected
HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
144.8
Sample id
Sample description
nTPM
Hippocampus nTPM: 144.8
1855
Male, age 76, left hemisphere
206.6
2621
Female, age 67, right hemisphere
184.2
1898
Male, age 80, left hemisphere
153.4
1911
Female, age 85, right hemisphere
118.9
2148
Female, age 91, left hemisphere
106.4
2529
Female, age 94, left hemisphere
99.1
Dentate gyrus nTPM: 107.9
2010
Male, age 76, both hemispheres
135.5
2531
Female, age 67, both hemispheres
115.8
2246
Female, age 85, both hemispheres
113.0
2530
Female, age 94, left hemisphere
107.8
2528
Male, age 74, both hemispheres
94.2
1927
Female, age 91, both hemispheres
80.9
Entorhinal gyrus nTPM: 102.9
2117
Female, age 91, right hemisphere
157.0
2613
Female, age 94, left hemisphere
107.2
1787
Male, age 76, left hemisphere
105.9
2764
Male, age 80, right hemisphere
85.4
2686
Male, age 75, right hemisphere
82.7
1938
Female, age 85, left hemisphere
78.9
Hippocampus, CA1 nTPM: 94.6
2045
Male, age 76, both hemispheres
113.7
1873
Female, age 85, both hemispheres
107.7
2082
Female, age 91, right hemisphere
105.3
2527
Male, age 74, both hemispheres
81.9
2749
Male, age 80, left hemisphere
64.5
Hippocampus, CA2 nTPM: 124.8
1940
Female, age 85, left hemisphere
201.0
2437
Female, age 94, left hemisphere
137.6
1892
Male, age 76, both hemispheres
109.1
2113
Female, age 91, right hemisphere
104.2
1963
Male, age 80, left hemisphere
100.9
2249
Male, age 74, both hemispheres
96.1
Hippocampus, CA3 nTPM: 88.4
1867
Male, age 76, both hemispheres
115.3
1891
Female, age 85, both hemispheres
106.8
2861
Female, age 67, both hemispheres
102.5
2436
Male, age 74, both hemispheres
85.0
2137
Male, age 80, left hemisphere
77.2
2620
Female, age 94, left hemisphere
43.7
Parahippocampal cortex nTPM: 95.2
2250
Female, age 67, right hemisphere
228.2
2018
Male, age 76, both hemispheres
104.0
2693
Female, age 94, both hemispheres
97.4
2692
Male, age 74, both hemispheres
90.9
2532
Female, age 72, left hemisphere
79.5
1850
Male, age 80, both hemispheres
78.9
2245
Female, age 91, both hemispheres
76.0
1933
Female, age 85, both hemispheres
70.5
1990
Female, age 91, right hemisphere
64.3
2622
Female, age 67, right hemisphere
61.9
Perirhinal gyrus nTPM: 85.1
2521
Female, age 94, right hemisphere
110.1
2848
Male, age 76, right hemisphere
95.3
1841
Female, age 85, right hemisphere
76.7
1794
Male, age 80, right hemisphere
74.9
1847
Female, age 91, left hemisphere
68.8
Subiculum nTPM: 128.7
2042
Male, age 76, both hemispheres
200.9
2729
Female, age 91, right hemisphere
144.4
2438
Female, age 94, left hemisphere
121.7
1901
Male, age 80, both hemispheres
117.5
2619
Male, age 74, both hemispheres
109.4
1977
Female, age 85, both hemispheres
78.1
HIPPOCAMPAL FORMATION - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
22.7
GTEx sample id
Sample description
nTPM
Brain - Hippocampus Average nTPM: 22.7
Samples: 197
Max nTPM: 158.2
Min nTPM: 0.7
Std nTPM: 22.5
Median nTPM: 16.7
GTEX-PWO3-0011-R1A-SM-2I5EW
60-69 years, female
158.2
GTEX-14PN4-0011-R1b-SM-69LP8
50-59 years, male
129.8
GTEX-13OW5-0011-R1b-SM-5L3GE
60-69 years, male
126.2
GTEX-13NYS-0011-R1b-SM-5MR55
60-69 years, male
113.0
GTEX-QVUS-0011-R1A-SM-3GAD2
60-69 years, female
84.0
GTEX-13JUV-0011-R1a-SM-5LZY4
40-49 years, female
80.5
GTEX-OHPN-0011-R1A-SM-2I5GB
60-69 years, female
71.9
GTEX-1H1DG-0011-R1b-SM-CKZP1
70-79 years, male
66.1
GTEX-QVJO-0011-R1A-SM-2S1QI
60-69 years, female
64.1
GTEX-131YS-0011-R1a-SM-5DUXC
60-69 years, female
63.0
GTEX-X4XX-0011-R1B-SM-3P622
60-69 years, male
61.9
GTEX-132Q8-0011-R1a-SM-5EGLK
60-69 years, male
58.8
GTEX-16YQH-0011-R1a-SM-7LT8R
30-39 years, male
58.4
GTEX-13RTJ-0011-R1a-SM-5O9D9
60-69 years, male
55.4
GTEX-1H3O1-0011-R1b-SM-CL554
60-69 years, male
51.5
GTEX-17EVQ-0011-R1a-SM-7189S
70-79 years, male
50.8
GTEX-UTHO-0011-R1A-SM-3GIJO
60-69 years, male
50.8
GTEX-1H3NZ-0011-R1a-SM-CKZP5
60-69 years, male
47.8
GTEX-R55E-0011-R1A-SM-2TC6N
20-29 years, male
45.1
GTEX-13G51-0011-R1a-SM-5LZYR
60-69 years, male
43.6
GTEX-QMR6-0011-R1A-SM-32PKW
50-59 years, male
43.2
GTEX-NPJ7-0011-R1a-SM-3GACT
60-69 years, female
42.5
GTEX-14E7W-0011-R1b-SM-5YYAT
70-79 years, male
42.2
GTEX-15DCD-0011-R1b-SM-6LPIJ
70-79 years, female
42.1
GTEX-13OVJ-0011-R1b-SM-5L3I6
50-59 years, female
41.7
GTEX-T5JC-0011-R1A-SM-32PM6
20-29 years, male
40.8
GTEX-1EMGI-0011-R1b-SM-9OSWZ
60-69 years, male
40.3
GTEX-14PQA-0011-R1b-SM-6EU1G
50-59 years, female
39.7
GTEX-1E2YA-0011-R1b-SM-CJI29
50-59 years, male
38.6
GTEX-183WM-0011-R1a-SM-718A8
70-79 years, female
38.5
GTEX-XMD1-0011-R1A-SM-4AT4C
60-69 years, male
38.1
GTEX-X585-0011-R1B-SM-46MVE
50-59 years, male
37.4
GTEX-13X6I-0011-R1b-SM-5PNZC
60-69 years, male
37.2
GTEX-1313W-0011-R1b-SM-5EQ4A
50-59 years, female
36.2
GTEX-17F97-0011-R1b-SM-7IGM9
50-59 years, male
35.8
GTEX-11ZTS-0011-R1a-SM-5BC71
60-69 years, female
35.1
GTEX-1F48J-0011-R1a-SM-9QEIC
50-59 years, female
35.0
GTEX-NPJ8-0011-R1a-SM-33HCB
40-49 years, male
34.6
GTEX-1GN1U-0011-R1a-SM-CJI25
50-59 years, female
34.4
GTEX-1A3MX-0011-R1b-SM-7P8PH
60-69 years, male
34.3
GTEX-1GN73-0011-R1a-SM-CKZNT
60-69 years, male
34.2
GTEX-14C5O-0011-R1b-SM-6AJBW
60-69 years, male
32.3
GTEX-1HR98-0011-R1a-SM-ARZLQ
60-69 years, male
32.2
GTEX-14LZ3-0011-R1a-SM-69LP5
60-69 years, female
32.1
GTEX-13N1W-0011-R1b-SM-5MR4T
70-79 years, male
31.6
GTEX-1EH9U-0011-R1b-SM-CJI2B
60-69 years, male
31.4
GTEX-1GMR8-0011-R1b-SM-CJI2O
50-59 years, female
30.8
GTEX-1B996-0011-R1b-SM-7P8PO
60-69 years, male
30.7
GTEX-N7MT-0011-R1a-SM-CNPO1
60-69 years, female
30.6
GTEX-1ICLZ-0011-R1b-SM-A9SM3
60-69 years, male
30.5
GTEX-144GO-0011-R1a-SM-5PNWO
60-69 years, male
29.5
GTEX-145LS-0011-R1b-SM-5PNUP
60-69 years, female
29.4
GTEX-1B933-0011-R1b-SM-9QEGW
50-59 years, female
29.3
GTEX-1IY9M-0011-R1a-SM-EXURZ
60-69 years, male
29.1
GTEX-1BAJH-0011-R1a-SM-7P8SV
70-79 years, male
28.9
GTEX-1399T-0011-R1b-SM-5DUWN
60-69 years, male
28.2
GTEX-1B8L1-0011-R1a-SM-7P8SS
60-69 years, male
28.2
GTEX-16XZZ-0011-R1a-SM-7LTAH
60-69 years, male
27.9
GTEX-1J1OQ-0011-R1a-SM-A9G1Z
40-49 years, female
26.2
GTEX-13SLW-0011-R1a-SM-5S2W7
70-79 years, male
25.9
GTEX-13QIC-0011-R1a-SM-5O9CJ
60-69 years, female
25.8
GTEX-13FHO-0011-R1b-SM-5KLZG
60-69 years, male
25.0
GTEX-WWYW-0011-R1A-SM-3TW8G
50-59 years, female
25.0
GTEX-1HSKV-0011-R1b-SM-CMKH7
60-69 years, male
24.9
GTEX-1GZHY-0011-R1a-SM-CE6RR
50-59 years, female
24.4
GTEX-YJ89-0011-R1a-SM-4RGLS
60-69 years, male
24.3
GTEX-QDT8-0011-R1A-SM-32PKS
30-39 years, female
23.9
GTEX-17HII-0011-R1b-SM-7MGVW
50-59 years, male
22.8
GTEX-15CHQ-0011-R1a-SM-COH27
60-69 years, male
22.6
GTEX-1I1GQ-0011-R1a-SM-CY8GG
50-59 years, male
22.3
GTEX-11ONC-0011-R1a-SM-57WD4
60-69 years, male
21.6
GTEX-13JVG-0011-R1a-SM-5KM32
60-69 years, male
21.6
GTEX-13RTL-0011-R1a-SM-5PNZ8
40-49 years, male
21.5
GTEX-13N2G-0011-R1b-SM-5MR3G
60-69 years, male
20.8
GTEX-13NZA-0011-R1b-SM-5LUAF
60-69 years, male
20.6
GTEX-18A6Q-0011-R1b-SM-731DI
60-69 years, male
20.1
GTEX-ZDXO-0011-R1a-SM-4WKF4
60-69 years, male
20.0
GTEX-ZVZQ-0011-R1a-SM-57WBU
60-69 years, female
19.6
GTEX-11GSO-0011-R1b-SM-57WD3
60-69 years, male
19.5
GTEX-12WSH-0011-R1a-SM-5GU5V
50-59 years, male
19.3
GTEX-ZUA1-0011-R1a-SM-4YCE2
40-49 years, male
19.3
GTEX-11TUW-0011-R1a-SM-DO92S
60-69 years, male
19.3
GTEX-145MH-0011-R1b-SM-5PNWY
50-59 years, male
18.7
GTEX-1I1GS-0011-R1a-SM-CJI43
60-69 years, male
18.7
GTEX-13S7M-0011-R1b-SM-5PNZE
60-69 years, female
18.4
GTEX-1HGF4-0011-R1a-SM-CJI3S
60-69 years, male
18.4
GTEX-N7MS-0011-R1a-SM-2HMJG
60-69 years, male
18.3
GTEX-1H3VE-0011-R1a-SM-A9G1K
40-49 years, male
18.3
GTEX-WL46-0011-R1A-SM-3LK6M
50-59 years, male
18.2
GTEX-1I1HK-0011-R1b-SM-CM2T7
60-69 years, male
18.2
GTEX-1GF9W-0011-R1a-SM-9QEIQ
60-69 years, male
17.6
GTEX-1F75W-0011-R1a-SM-ARU81
60-69 years, male
17.3
GTEX-T6MN-0011-R1A-SM-32QOY
50-59 years, male
17.2
GTEX-13QJC-0011-R1b-SM-5S2UU
60-69 years, female
16.9
GTEX-1AX9I-0011-R1b-SM-7RHG2
60-69 years, male
16.9
GTEX-13OVL-0011-R1a-SM-5L3H5
50-59 years, male
16.8
GTEX-1A8G6-0011-R1a-SM-7P8PC
60-69 years, male
16.8
GTEX-16GPK-0011-R1b-SM-7EWDH
60-69 years, male
16.7
GTEX-1E1VI-0011-R1a-SM-ARZMM
50-59 years, male
16.7
GTEX-1F6IF-0011-R1b-SM-9WG78
60-69 years, male
16.7
GTEX-1A32A-0011-R1a-SM-7P8SQ
50-59 years, female
16.2
GTEX-RNOR-0011-R1A-SM-CNNP5
50-59 years, female
15.9
GTEX-ZF28-0011-R1a-SM-4WWD1
60-69 years, male
15.8
GTEX-13OW8-0011-R1a-SM-5L3HI
60-69 years, male
15.7
GTEX-17EVP-0011-R1a-SM-7DHLA
40-49 years, male
15.5
GTEX-WHSE-0011-R1A-SM-3P5ZK
20-29 years, male
15.1
GTEX-12WSF-0011-R1a-SM-5DUVI
70-79 years, male
14.9
GTEX-X4EP-0011-R1A-SM-3P624
60-69 years, female
14.8
GTEX-1IDJH-0011-R1b-SM-ARU6U
70-79 years, male
14.6
GTEX-11EI6-0011-R1a-SM-DO93L
60-69 years, male
14.5
GTEX-1CB4G-0011-R1b-SM-9QEHT
60-69 years, male
14.5
GTEX-1HBPI-0011-R1b-SM-A9SKF
50-59 years, male
14.5
GTEX-13O3Q-0011-R1b-SM-5KM3L
50-59 years, male
14.2
GTEX-11GS4-0011-R1a-SM-DO129
60-69 years, male
14.1
GTEX-14PJM-0011-R1a-SM-CNPO3
50-59 years, female
14.0
GTEX-14ABY-0011-R1a-SM-6EU2W
50-59 years, male
13.4
GTEX-1C6VQ-0011-R1a-SM-7P8Q2
50-59 years, male
13.4
GTEX-16NPV-0011-R1b-SM-7MGVZ
50-59 years, female
13.0
GTEX-16Z82-0011-R1b-SM-7EPHZ
60-69 years, male
12.9
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y
40-49 years, male
12.5
GTEX-13FXS-0011-R1a-SM-5K7U6
50-59 years, male
12.1
GTEX-14BIM-0011-R1a-SM-69LQI
60-69 years, female
12.0
GTEX-13OW7-0011-R1b-SM-5L3HF
50-59 years, male
11.7
GTEX-1212Z-0011-R1b-SM-5BC72
60-69 years, male
11.5
GTEX-13CF2-0011-R1a-SM-5LZY1
60-69 years, male
11.4
GTEX-1H23P-0011-R1a-SM-ACKVC
60-69 years, male
11.3
GTEX-13FLW-0011-R1b-SM-5LZX2
50-59 years, male
11.0
GTEX-17HG3-0011-R1a-SM-7LG6H
30-39 years, female
10.8
GTEX-NL3H-0011-R1a-SM-48TDJ
60-69 years, male
10.8
GTEX-ZAB4-0011-R1a-SM-4RGNO
40-49 years, male
10.7
GTEX-TSE9-0011-R1A-SM-3DB7E
60-69 years, female
10.6
GTEX-17MF6-0011-R1a-SM-72D6O
40-49 years, male
10.5
GTEX-1EKGG-0011-R1b-SM-9QEI1
60-69 years, male
10.5
GTEX-14JIY-0011-R1a-SM-68713
60-69 years, male
10.2
GTEX-13FHP-0011-R1b-SM-5K7XL
50-59 years, male
10.1
GTEX-WVLH-0011-R1A-SM-4MVOK
50-59 years, male
10.0
GTEX-1HSMO-0011-R1a-SM-CM2SV
60-69 years, male
10.0
GTEX-12ZZX-0011-R1a-SM-5EQ6B
40-49 years, female
9.9
GTEX-14PJO-0011-R1b-SM-6AJAK
60-69 years, male
9.9
GTEX-1GTWX-0011-R1a-SM-CE6RL
60-69 years, male
9.7
GTEX-1C64N-0011-R1b-SM-7P8Q7
50-59 years, male
9.5
GTEX-14E6D-0011-R1b-SM-5YYAW
50-59 years, male
9.4
GTEX-17JCI-0011-R1b-SM-718A3
60-69 years, female
9.4
GTEX-1CB4J-0011-R1a-SM-9WG64
60-69 years, male
9.3
GTEX-WZTO-0011-R1B-SM-3NMAR
40-49 years, male
8.9
GTEX-1GN2E-0011-R1b-SM-CE6RJ
60-69 years, male
8.5
GTEX-1H1ZS-0011-R1b-SM-A9G1E
70-79 years, male
8.5
GTEX-1IOXB-0011-R1a-SM-D4P27
50-59 years, male
8.4
GTEX-1LB8K-0011-R1b-SM-EZ6MV
50-59 years, male
8.4
GTEX-14LLW-0011-R1a-SM-5ZZVD
70-79 years, female
8.3
GTEX-1F75A-0011-R1b-SM-CE6RA
50-59 years, male
8.2
GTEX-1EX96-0011-R1a-SM-CE6R5
50-59 years, male
8.1
GTEX-Q2AG-0011-R1A-SM-2HMJI
40-49 years, female
7.8
GTEX-17HHY-0011-R1a-SM-7189V
50-59 years, male
7.7
GTEX-15UF6-0011-R1a-SM-9QEGH
70-79 years, female
7.7
GTEX-1H4P4-0011-R1b-SM-CL54V
50-59 years, male
7.7
GTEX-12WSM-0011-R1a-SM-5LZW6
60-69 years, male
7.6
GTEX-1H1CY-0011-R1a-SM-CKZOZ
60-69 years, female
7.4
GTEX-13112-0011-R1b-SM-5HL7K
50-59 years, male
7.1
GTEX-1IKK5-0011-R1b-SM-CE6SQ
60-69 years, male
7.0
GTEX-P44H-0011-R1A-SM-3NM8J
40-49 years, male
6.9
GTEX-11WQC-0011-R1b-SM-DO932
60-69 years, male
6.5
GTEX-1J8Q2-0011-R1a-SM-D4P2D
60-69 years, male
6.5
GTEX-1HT8W-0011-R1b-SM-CJI3V
30-39 years, male
6.4
GTEX-1I1GV-0011-R1a-SM-CL559
60-69 years, male
6.4
GTEX-11UD1-0011-R1b-SM-5BC7D
40-49 years, female
6.3
GTEX-13NYB-0011-R1b-SM-5KM4F
40-49 years, male
6.3
GTEX-13O3O-0011-R1b-SM-5KM2K
60-69 years, female
6.3
GTEX-11ZVC-0011-R1b-SM-5BC6M
50-59 years, female
6.2
GTEX-1LG7Y-0011-R1a-SM-EYYWV
50-59 years, male
6.2
GTEX-YFC4-0011-R1a-SM-4V6EH
40-49 years, female
5.8
GTEX-PVOW-0011-R1A-SM-32PL6
40-49 years, male
5.7
GTEX-13OW6-0011-R1a-SM-5L3HQ
50-59 years, male
5.6
GTEX-145LU-0011-R1a-SM-5Q5CE
50-59 years, male
4.9
GTEX-1GF9V-0011-R1a-SM-CKZNQ
60-69 years, male
4.9
GTEX-15ER7-0011-R1b-SM-7KUE1
20-29 years, female
4.8
GTEX-13PDP-0011-R1a-SM-5PNX5
60-69 years, male
4.7
GTEX-12WSD-0011-R1b-SM-5LZVY
60-69 years, female
4.6
GTEX-S7SE-0011-R1A-SM-2XCDE
50-59 years, male
4.6
GTEX-11GSP-0011-R1a-SM-9QEJ3
60-69 years, female
4.2
GTEX-1F6I4-0011-R1a-SM-9OSWU
60-69 years, male
4.2
GTEX-1EWIQ-0011-R1a-SM-9OSX7
70-79 years, female
4.1
GTEX-1B8SF-0011-R1b-SM-7P8Q8
60-69 years, male
4.0
GTEX-131XH-0011-R1a-SM-5DUWA
50-59 years, male
3.9
GTEX-139TT-0011-R1a-SM-5LZVD
60-69 years, male
3.7
GTEX-14ASI-0011-R1b-SM-5S2TY
60-69 years, male
3.6
GTEX-1C6VR-0011-R1a-SM-7MXUE
60-69 years, male
3.5
GTEX-11DXW-0011-R1a-SM-DNZZD
40-49 years, male
2.7
GTEX-139T8-0011-R1a-SM-5HL75
60-69 years, male
2.5
GTEX-13NZ8-0011-R1b-SM-5KM3V
60-69 years, female
2.5
GTEX-P44G-0011-R1A-SM-2I3FE
30-39 years, male
2.5
GTEX-12WSE-0011-R1b-SM-5GU4V
20-29 years, male
1.8
GTEX-ZE7O-0011-R1a-SM-57WDM
50-59 years, female
1.8
GTEX-Y8DK-0011-R1A-SM-4RGLO
60-69 years, male
1.7
GTEX-144GL-0011-R1a-SM-5PNZ5
50-59 years, male
1.6
GTEX-13FTY-0011-R1a-SM-5LZXE
40-49 years, female
1.2
GTEX-1CAV2-0011-R1a-SM-ARZML
40-49 years, female
0.7
Show allShow less
HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
0.8
Mouse sample
Sample description
nTPM
Entorhinal cortex nTPM: 0.1
Samples: 4
Max nTPM: 0.1
Min nTPM: 0.0
Sample A
Male
0.1
Sample B
Male
0.1
Sample C
Female
0.1
Sample D
Female
0.0
Hippocampal formation nTPM: 0.8
Samples: 4
Max nTPM: 1.4
Min nTPM: 0.3
Sample A
Male
0.3
Sample B
Male
0.6
Sample C
Female
1.4
Sample D
Female
0.7
HIPPOCAMPAL FORMATION - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.