We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
8.7
nTPM
HPA Brain:
6.2
nTPM
GTEx:
8.7
nTPM
FANTOM5:
1.1
Scaled Tags Per Million
MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
6.2
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 1.4
1870
Female, age 42, unknown
2.1
1827
Male, age 72, unknown
2.0
2411
Female, age 72, unknown
2.0
2828
Female, age 72, unknown
1.9
2666
Male, age 74, left hemisphere
1.8
1830
Male, age 51, unknown
1.7
2019
Male, age 18, unknown
1.0
1833
Male, age 53, unknown
0.6
2586
Male, age 75, left hemisphere
0.6
2219
Male, age 76, both hemispheres
0.5
Dorsal raphe nucleus nTPM: 2.2
2016
Female, age 72, unknown
3.6
1828
Male, age 53, unknown
3.0
2298
Female, age 72, unknown
2.0
2047
Male, age 72, unknown
1.4
2750
Male, age 76, both hemispheres
1.0
Inferior colliculus nTPM: 1.4
2849
Male, age 72, unknown
2.2
1890
Male, age 53, unknown
1.5
2097
Female, age 72, unknown
1.1
1848
Female, age 42, unknown
1.0
Median raphe nucleus nTPM: 2.1
2220
Male, age 76, midline
2.1
Periaquaductal grey, anterior nTPM: 3.4
1795
Male, age 51, unknown
4.3
2502
Female, age 75, unknown
3.1
1947
Male, age 18, unknown
2.8
Periaquaductal grey, dorsal nTPM: 3.8
2850
Male, age 76, both hemispheres
6.7
1840
Male, age 53, unknown
3.9
1831
Male, age 72, unknown
2.8
2464
Female, age 72, unknown
1.6
Periaquaductal grey, lateral nTPM: 6.2
2140
Male, age 76, both hemispheres
8.6
2053
Male, age 18, unknown
5.7
2272
Male, age 74, both hemispheres
4.2
Pretectal area nTPM: 3.3
2273
Male, age 74, both hemispheres
6.4
2667
Female, age 75, unknown
6.0
2224
Female, age 72, unknown
3.5
2316
Male, age 76, right hemisphere
3.4
1815
Male, age 53, unknown
3.3
2407
Male, age 75, both hemispheres
3.3
2825
Male, age 18, unknown
3.2
1944
Female, age 72, unknown
2.8
1816
Male, age 51, unknown
1.7
1817
Female, age 42, unknown
1.3
2007
Male, age 72, unknown
1.1
Red nucleus nTPM: 1.3
2725
Female, age 75, unknown
2.3
2823
Male, age 76, right hemisphere
2.0
1821
Female, age 72, unknown
1.9
2503
Female, age 72, unknown
1.6
1865
Male, age 51, unknown
1.4
2227
Male, age 72, unknown
1.2
2785
Male, age 18, unknown
1.2
2588
Male, age 74, left hemisphere
1.1
1904
Male, age 53, unknown
0.9
1954
Female, age 42, unknown
0.9
2769
Male, age 72, unknown
0.9
2584
Male, age 75, left hemisphere
0.3
Substantia nigra nTPM: 2.7
2409
Female, age 72, unknown
7.3
1851
Male, age 51, unknown
3.5
2699
Male, age 18, unknown
3.4
2241
Male, age 72, unknown
3.2
1916
Female, age 42, unknown
2.2
2665
Male, age 74, both hemispheres
2.1
2590
Female, age 75, unknown
1.9
1889
Female, age 72, unknown
1.2
1941
Male, age 53, unknown
1.2
2583
Male, age 75, right hemisphere
0.6
Superior colliculus nTPM: 2.7
1995
Male, age 72, unknown
4.6
2087
Female, age 72, unknown
4.0
2587
Male, age 74, left hemisphere
3.1
2664
Male, age 75, both hemispheres
3.0
1796
Male, age 53, unknown
2.9
2261
Male, age 18, unknown
2.6
1913
Female, age 42, unknown
2.4
1839
Male, age 51, unknown
2.1
1895
Male, age 76, right hemisphere
1.9
2668
Female, age 75, unknown
0.6
Ventral tegmental area nTPM: 2.8
1915
Female, age 42, unknown
4.5
2021
Male, age 53, unknown
4.0
2218
Male, age 76, both hemispheres
2.2
1942
Male, age 51, unknown
2.0
2410
Female, age 72, unknown
2.0
2223
Female, age 72, unknown
1.9
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
8.7
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 8.7
Samples: 139
Max nTPM: 119.2
Min nTPM: 0.1
Std nTPM: 13.8
Median nTPM: 4.6
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
119.2
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
73.7
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
56.7
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
54.0
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
37.3
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
26.8
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
25.5
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
25.1
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
19.8
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
19.7
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
19.7
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
19.1
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
18.0
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
17.8
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
16.6
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
16.4
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
16.3
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
15.5
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
14.8
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
14.7
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
14.4
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
14.1
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
13.9
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
13.7
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
13.7
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
13.5
GTEX-NPJ8-0011-R2a-SM-2TC6M
40-49 years, male
13.0
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
12.0
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
11.2
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
10.8
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
10.4
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
10.1
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
10.0
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
9.9
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
9.8
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
9.6
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
9.5
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
9.2
GTEX-1IKOH-0011-R2a-SM-CMKHO
60-69 years, female
8.6
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
8.5
GTEX-OXRO-0011-R2A-SM-3NB1W
60-69 years, female
8.4
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
8.1
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
7.9
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
7.7
GTEX-PWO3-0011-R2A-SM-2S1OX
60-69 years, female
7.3
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
7.2
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
7.0
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
6.5
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
6.4
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
6.4
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
6.3
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
6.2
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
6.0
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
6.0
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
6.0
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
5.8
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
5.8
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
5.5
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
5.5
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
5.4
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
5.4
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
5.1
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
5.0
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
5.0
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
5.0
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
4.8
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
4.8
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
4.6
GTEX-18464-0011-R2a-SM-731AL
50-59 years, male
4.6
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
4.6
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
4.5
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
4.3
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
4.3
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
4.3
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
4.2
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
4.2
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
4.2
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
4.1
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
4.0
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
4.0
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
4.0
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
3.8
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
3.7
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
3.6
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
3.6
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
3.6
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
3.5
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
3.5
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
3.5
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
3.5
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
3.4
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
3.4
GTEX-N7MT-0011-R2a-SM-2I3GI
60-69 years, female
3.3
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
3.3
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
3.2
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
3.1
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
3.0
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
2.9
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
2.8
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
2.7
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
2.7
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
2.6
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
2.6
GTEX-P44G-0011-R2A-SM-2XCD2
30-39 years, male
2.5
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
2.5
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
2.4
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
2.4
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
2.2
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
2.2
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
2.2
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
2.2
GTEX-T5JC-0011-R2A-SM-32PLZ
20-29 years, male
2.2
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
2.2
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
2.1
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
2.1
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
2.1
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
2.1
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
2.1
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
2.1
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
2.0
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
2.0
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
1.9
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
1.9
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
1.9
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
1.8
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
1.8
GTEX-NL4W-0011-R2a-SM-2I5GV
50-59 years, male
1.7
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
1.5
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
1.4
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
1.4
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
1.3
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
1.2
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
1.2
GTEX-N7MS-0011-R2a-SM-2HML6
60-69 years, male
1.0
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
0.6
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
0.6
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
0.4
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
0.2
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
0.1
Show allShow less
MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.