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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
h
m
l
n
Glial cells:
Low
Neuronal cells:
Medium
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
13.4
nTPM
HPA Brain:
79.0
nTPM
GTEx:
13.4
nTPM
FANTOM5:
4.0
Scaled Tags Per Million
Pig:
30.0
nTPM
Mouse:
17.2
nTPM
Allen mouse:
5.1
Expression energy
HIPPOCAMPUS - Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
Antibody HPA031369
Glial cells
Low
Neuronal cells
Medium
HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
79.0
Sample id
Sample description
nTPM
Hippocampus nTPM: 14.3
1855
Male, age 76, left hemisphere
18.8
1898
Male, age 80, left hemisphere
17.8
2529
Female, age 94, left hemisphere
16.6
1911
Female, age 85, right hemisphere
12.9
2621
Female, age 67, right hemisphere
10.1
2148
Female, age 91, left hemisphere
9.3
Dentate gyrus nTPM: 15.0
2246
Female, age 85, both hemispheres
25.1
2531
Female, age 67, both hemispheres
19.2
2010
Male, age 76, both hemispheres
13.6
2528
Male, age 74, both hemispheres
12.2
1927
Female, age 91, both hemispheres
10.4
2530
Female, age 94, left hemisphere
9.3
Entorhinal gyrus nTPM: 58.4
2764
Male, age 80, right hemisphere
88.4
2613
Female, age 94, left hemisphere
84.2
1938
Female, age 85, left hemisphere
60.9
2686
Male, age 75, right hemisphere
53.8
1787
Male, age 76, left hemisphere
43.7
2117
Female, age 91, right hemisphere
19.7
Hippocampus, CA1 nTPM: 18.0
2045
Male, age 76, both hemispheres
28.0
2082
Female, age 91, right hemisphere
25.2
2527
Male, age 74, both hemispheres
13.1
1873
Female, age 85, both hemispheres
12.1
2749
Male, age 80, left hemisphere
11.5
Hippocampus, CA2 nTPM: 20.6
1940
Female, age 85, left hemisphere
42.9
2113
Female, age 91, right hemisphere
22.9
2437
Female, age 94, left hemisphere
22.3
1892
Male, age 76, both hemispheres
17.5
2249
Male, age 74, both hemispheres
9.3
1963
Male, age 80, left hemisphere
8.6
Hippocampus, CA3 nTPM: 16.6
2620
Female, age 94, left hemisphere
19.8
2861
Female, age 67, both hemispheres
17.8
1891
Female, age 85, both hemispheres
16.7
2436
Male, age 74, both hemispheres
15.6
1867
Male, age 76, both hemispheres
15.1
2137
Male, age 80, left hemisphere
14.9
Parahippocampal cortex nTPM: 56.7
1850
Male, age 80, both hemispheres
103.1
2622
Female, age 67, right hemisphere
84.5
2532
Female, age 72, left hemisphere
78.1
2693
Female, age 94, both hemispheres
62.3
1933
Female, age 85, both hemispheres
54.9
2692
Male, age 74, both hemispheres
44.8
1990
Female, age 91, right hemisphere
41.3
2245
Female, age 91, both hemispheres
34.9
2018
Male, age 76, both hemispheres
33.0
2250
Female, age 67, right hemisphere
29.8
Perirhinal gyrus nTPM: 79.0
1794
Male, age 80, right hemisphere
122.3
1841
Female, age 85, right hemisphere
75.6
2521
Female, age 94, right hemisphere
67.4
2848
Male, age 76, right hemisphere
65.2
1847
Female, age 91, left hemisphere
64.2
Subiculum nTPM: 24.2
1977
Female, age 85, both hemispheres
42.8
2619
Male, age 74, both hemispheres
29.3
2438
Female, age 94, left hemisphere
24.3
1901
Male, age 80, both hemispheres
20.8
2042
Male, age 76, both hemispheres
15.2
2729
Female, age 91, right hemisphere
12.8
HIPPOCAMPAL FORMATION - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
13.4
GTEx sample id
Sample description
nTPM
Brain - Hippocampus Average nTPM: 13.4
Samples: 197
Max nTPM: 64.4
Min nTPM: 0.8
Std nTPM: 11.0
Median nTPM: 10.1
GTEX-P44G-0011-R1A-SM-2I3FE
30-39 years, male
64.4
GTEX-145MH-0011-R1b-SM-5PNWY
50-59 years, male
62.9
GTEX-1EWIQ-0011-R1a-SM-9OSX7
70-79 years, female
60.0
GTEX-1HT8W-0011-R1b-SM-CJI3V
30-39 years, male
57.4
GTEX-WL46-0011-R1A-SM-3LK6M
50-59 years, male
54.3
GTEX-1ICLZ-0011-R1b-SM-A9SM3
60-69 years, male
51.2
GTEX-RNOR-0011-R1A-SM-CNNP5
50-59 years, female
51.2
GTEX-R55E-0011-R1A-SM-2TC6N
20-29 years, male
45.2
GTEX-13FLW-0011-R1b-SM-5LZX2
50-59 years, male
36.4
GTEX-1I1HK-0011-R1b-SM-CM2T7
60-69 years, male
36.0
GTEX-14LLW-0011-R1a-SM-5ZZVD
70-79 years, female
32.9
GTEX-WWYW-0011-R1A-SM-3TW8G
50-59 years, female
31.4
GTEX-NL3H-0011-R1a-SM-48TDJ
60-69 years, male
31.3
GTEX-16YQH-0011-R1a-SM-7LT8R
30-39 years, male
30.5
GTEX-14ABY-0011-R1a-SM-6EU2W
50-59 years, male
28.9
GTEX-1E2YA-0011-R1b-SM-CJI29
50-59 years, male
26.8
GTEX-11DXW-0011-R1a-SM-DNZZD
40-49 years, male
26.7
GTEX-1LG7Y-0011-R1a-SM-EYYWV
50-59 years, male
25.3
GTEX-12WSD-0011-R1b-SM-5LZVY
60-69 years, female
23.7
GTEX-1H1ZS-0011-R1b-SM-A9G1E
70-79 years, male
23.2
GTEX-ZAB4-0011-R1a-SM-4RGNO
40-49 years, male
23.1
GTEX-T5JC-0011-R1A-SM-32PM6
20-29 years, male
22.9
GTEX-QMR6-0011-R1A-SM-32PKW
50-59 years, male
22.8
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y
40-49 years, male
21.9
GTEX-13OW6-0011-R1a-SM-5L3HQ
50-59 years, male
21.4
GTEX-1F75A-0011-R1b-SM-CE6RA
50-59 years, male
21.3
GTEX-13FHO-0011-R1b-SM-5KLZG
60-69 years, male
20.7
GTEX-1313W-0011-R1b-SM-5EQ4A
50-59 years, female
19.8
GTEX-TSE9-0011-R1A-SM-3DB7E
60-69 years, female
19.4
GTEX-17F97-0011-R1b-SM-7IGM9
50-59 years, male
19.0
GTEX-13O3Q-0011-R1b-SM-5KM3L
50-59 years, male
18.7
GTEX-1J8Q2-0011-R1a-SM-D4P2D
60-69 years, male
18.7
GTEX-13NYB-0011-R1b-SM-5KM4F
40-49 years, male
18.3
GTEX-14BIM-0011-R1a-SM-69LQI
60-69 years, female
18.3
GTEX-1HGF4-0011-R1a-SM-CJI3S
60-69 years, male
18.3
GTEX-139T8-0011-R1a-SM-5HL75
60-69 years, male
18.2
GTEX-PWO3-0011-R1A-SM-2I5EW
60-69 years, female
18.2
GTEX-ZDXO-0011-R1a-SM-4WKF4
60-69 years, male
18.0
GTEX-ZF28-0011-R1a-SM-4WWD1
60-69 years, male
18.0
GTEX-13PDP-0011-R1a-SM-5PNX5
60-69 years, male
17.9
GTEX-13FHP-0011-R1b-SM-5K7XL
50-59 years, male
17.3
GTEX-1GMR8-0011-R1b-SM-CJI2O
50-59 years, female
17.1
GTEX-1J1OQ-0011-R1a-SM-A9G1Z
40-49 years, female
17.0
GTEX-132Q8-0011-R1a-SM-5EGLK
60-69 years, male
16.8
GTEX-1IKK5-0011-R1b-SM-CE6SQ
60-69 years, male
16.6
GTEX-WVLH-0011-R1A-SM-4MVOK
50-59 years, male
16.4
GTEX-12WSH-0011-R1a-SM-5GU5V
50-59 years, male
16.2
GTEX-17HII-0011-R1b-SM-7MGVW
50-59 years, male
16.2
GTEX-1GF9W-0011-R1a-SM-9QEIQ
60-69 years, male
16.0
GTEX-1IY9M-0011-R1a-SM-EXURZ
60-69 years, male
16.0
GTEX-11ONC-0011-R1a-SM-57WD4
60-69 years, male
15.6
GTEX-12WSE-0011-R1b-SM-5GU4V
20-29 years, male
15.6
GTEX-11GSP-0011-R1a-SM-9QEJ3
60-69 years, female
15.3
GTEX-WHSE-0011-R1A-SM-3P5ZK
20-29 years, male
15.1
GTEX-131XH-0011-R1a-SM-5DUWA
50-59 years, male
15.0
GTEX-QDT8-0011-R1A-SM-32PKS
30-39 years, female
14.6
GTEX-1H3O1-0011-R1b-SM-CL554
60-69 years, male
14.5
GTEX-S7SE-0011-R1A-SM-2XCDE
50-59 years, male
14.2
GTEX-QVJO-0011-R1A-SM-2S1QI
60-69 years, female
14.1
GTEX-1CAV2-0011-R1a-SM-ARZML
40-49 years, female
14.1
GTEX-ZE7O-0011-R1a-SM-57WDM
50-59 years, female
13.9
GTEX-12WSF-0011-R1a-SM-5DUVI
70-79 years, male
13.8
GTEX-1EH9U-0011-R1b-SM-CJI2B
60-69 years, male
13.8
GTEX-Y8DK-0011-R1A-SM-4RGLO
60-69 years, male
13.6
GTEX-11EI6-0011-R1a-SM-DO93L
60-69 years, male
13.2
GTEX-1IOXB-0011-R1a-SM-D4P27
50-59 years, male
13.2
GTEX-14PJO-0011-R1b-SM-6AJAK
60-69 years, male
12.9
GTEX-16Z82-0011-R1b-SM-7EPHZ
60-69 years, male
12.8
GTEX-X585-0011-R1B-SM-46MVE
50-59 years, male
12.7
GTEX-13SLW-0011-R1a-SM-5S2W7
70-79 years, male
12.6
GTEX-1399T-0011-R1b-SM-5DUWN
60-69 years, male
12.3
GTEX-1F48J-0011-R1a-SM-9QEIC
50-59 years, female
12.3
GTEX-1B8L1-0011-R1a-SM-7P8SS
60-69 years, male
12.2
GTEX-N7MS-0011-R1a-SM-2HMJG
60-69 years, male
12.1
GTEX-XMD1-0011-R1A-SM-4AT4C
60-69 years, male
12.1
GTEX-14PN4-0011-R1b-SM-69LP8
50-59 years, male
12.0
GTEX-OHPN-0011-R1A-SM-2I5GB
60-69 years, female
11.9
GTEX-T6MN-0011-R1A-SM-32QOY
50-59 years, male
11.7
GTEX-1EKGG-0011-R1b-SM-9QEI1
60-69 years, male
11.6
GTEX-1GF9V-0011-R1a-SM-CKZNQ
60-69 years, male
11.6
GTEX-1H3VE-0011-R1a-SM-A9G1K
40-49 years, male
11.6
GTEX-145LS-0011-R1b-SM-5PNUP
60-69 years, female
11.4
GTEX-14C5O-0011-R1b-SM-6AJBW
60-69 years, male
11.3
GTEX-17JCI-0011-R1b-SM-718A3
60-69 years, female
11.0
GTEX-13N1W-0011-R1b-SM-5MR4T
70-79 years, male
10.9
GTEX-P44H-0011-R1A-SM-3NM8J
40-49 years, male
10.8
GTEX-11GS4-0011-R1a-SM-DO129
60-69 years, male
10.8
GTEX-1I1GS-0011-R1a-SM-CJI43
60-69 years, male
10.8
GTEX-1IDJH-0011-R1b-SM-ARU6U
70-79 years, male
10.8
GTEX-17MF6-0011-R1a-SM-72D6O
40-49 years, male
10.7
GTEX-1A3MX-0011-R1b-SM-7P8PH
60-69 years, male
10.6
GTEX-1C6VR-0011-R1a-SM-7MXUE
60-69 years, male
10.5
GTEX-1GTWX-0011-R1a-SM-CE6RL
60-69 years, male
10.4
GTEX-1EX96-0011-R1a-SM-CE6R5
50-59 years, male
10.3
GTEX-NPJ7-0011-R1a-SM-3GACT
60-69 years, female
10.2
GTEX-12WSM-0011-R1a-SM-5LZW6
60-69 years, male
10.1
GTEX-13FXS-0011-R1a-SM-5K7U6
50-59 years, male
10.1
GTEX-X4XX-0011-R1B-SM-3P622
60-69 years, male
10.1
GTEX-ZVZQ-0011-R1a-SM-57WBU
60-69 years, female
10.1
GTEX-1F75W-0011-R1a-SM-ARU81
60-69 years, male
10.1
GTEX-17HG3-0011-R1a-SM-7LG6H
30-39 years, female
10.0
GTEX-13JVG-0011-R1a-SM-5KM32
60-69 years, male
9.9
GTEX-1C64N-0011-R1b-SM-7P8Q7
50-59 years, male
9.9
GTEX-13OW7-0011-R1b-SM-5L3HF
50-59 years, male
9.7
GTEX-144GL-0011-R1a-SM-5PNZ5
50-59 years, male
9.7
GTEX-17EVQ-0011-R1a-SM-7189S
70-79 years, male
9.7
GTEX-14PJM-0011-R1a-SM-CNPO3
50-59 years, female
9.7
GTEX-1HR98-0011-R1a-SM-ARZLQ
60-69 years, male
9.7
GTEX-16GPK-0011-R1b-SM-7EWDH
60-69 years, male
9.5
GTEX-139TT-0011-R1a-SM-5LZVD
60-69 years, male
9.4
GTEX-13OVJ-0011-R1b-SM-5L3I6
50-59 years, female
9.4
GTEX-15ER7-0011-R1b-SM-7KUE1
20-29 years, female
9.4
GTEX-13OW8-0011-R1a-SM-5L3HI
60-69 years, male
9.3
GTEX-PVOW-0011-R1A-SM-32PL6
40-49 years, male
9.3
GTEX-1CB4G-0011-R1b-SM-9QEHT
60-69 years, male
9.3
GTEX-1HSMO-0011-R1a-SM-CM2SV
60-69 years, male
9.1
GTEX-1EMGI-0011-R1b-SM-9OSWZ
60-69 years, male
9.0
GTEX-YJ89-0011-R1a-SM-4RGLS
60-69 years, male
8.9
GTEX-1GN2E-0011-R1b-SM-CE6RJ
60-69 years, male
8.9
GTEX-13NYS-0011-R1b-SM-5MR55
60-69 years, male
8.8
GTEX-1GN1U-0011-R1a-SM-CJI25
50-59 years, female
8.8
GTEX-15CHQ-0011-R1a-SM-COH27
60-69 years, male
8.7
GTEX-13CF2-0011-R1a-SM-5LZY1
60-69 years, male
8.6
GTEX-16NPV-0011-R1b-SM-7MGVZ
50-59 years, female
8.6
GTEX-13112-0011-R1b-SM-5HL7K
50-59 years, male
8.4
GTEX-13N2G-0011-R1b-SM-5MR3G
60-69 years, male
8.4
GTEX-145LU-0011-R1a-SM-5Q5CE
50-59 years, male
8.4
GTEX-14E6D-0011-R1b-SM-5YYAW
50-59 years, male
8.4
GTEX-13QJC-0011-R1b-SM-5S2UU
60-69 years, female
8.3
GTEX-Q2AG-0011-R1A-SM-2HMJI
40-49 years, female
8.3
GTEX-1E1VI-0011-R1a-SM-ARZMM
50-59 years, male
8.3
GTEX-1GN73-0011-R1a-SM-CKZNT
60-69 years, male
8.3
GTEX-N7MT-0011-R1a-SM-CNPO1
60-69 years, female
8.3
GTEX-14JIY-0011-R1a-SM-68713
60-69 years, male
8.2
GTEX-1F6I4-0011-R1a-SM-9OSWU
60-69 years, male
8.2
GTEX-13FTY-0011-R1a-SM-5LZXE
40-49 years, female
8.0
GTEX-13RTL-0011-R1a-SM-5PNZ8
40-49 years, male
8.0
GTEX-1GZHY-0011-R1a-SM-CE6RR
50-59 years, female
8.0
GTEX-13JUV-0011-R1a-SM-5LZY4
40-49 years, female
7.8
GTEX-14ASI-0011-R1b-SM-5S2TY
60-69 years, male
7.8
GTEX-WZTO-0011-R1B-SM-3NMAR
40-49 years, male
7.7
GTEX-1H1DG-0011-R1b-SM-CKZP1
70-79 years, male
7.7
GTEX-11UD1-0011-R1b-SM-5BC7D
40-49 years, female
7.6
GTEX-1A32A-0011-R1a-SM-7P8SQ
50-59 years, female
7.6
GTEX-13X6I-0011-R1b-SM-5PNZC
60-69 years, male
7.5
GTEX-1C6VQ-0011-R1a-SM-7P8Q2
50-59 years, male
7.5
GTEX-1AX9I-0011-R1b-SM-7RHG2
60-69 years, male
7.4
GTEX-131YS-0011-R1a-SM-5DUXC
60-69 years, female
7.3
GTEX-1B933-0011-R1b-SM-9QEGW
50-59 years, female
7.2
GTEX-1LB8K-0011-R1b-SM-EZ6MV
50-59 years, male
7.2
GTEX-144GO-0011-R1a-SM-5PNWO
60-69 years, male
7.1
GTEX-15DCD-0011-R1b-SM-6LPIJ
70-79 years, female
7.1
GTEX-YFC4-0011-R1a-SM-4V6EH
40-49 years, female
7.1
GTEX-13O3O-0011-R1b-SM-5KM2K
60-69 years, female
7.0
GTEX-1B8SF-0011-R1b-SM-7P8Q8
60-69 years, male
7.0
GTEX-14PQA-0011-R1b-SM-6EU1G
50-59 years, female
6.9
GTEX-1I1GQ-0011-R1a-SM-CY8GG
50-59 years, male
6.9
GTEX-17HHY-0011-R1a-SM-7189V
50-59 years, male
6.8
GTEX-1H1CY-0011-R1a-SM-CKZOZ
60-69 years, female
6.6
GTEX-1HSKV-0011-R1b-SM-CMKH7
60-69 years, male
6.6
GTEX-13S7M-0011-R1b-SM-5PNZE
60-69 years, female
6.3
GTEX-ZUA1-0011-R1a-SM-4YCE2
40-49 years, male
6.2
GTEX-1HBPI-0011-R1b-SM-A9SKF
50-59 years, male
6.0
GTEX-1I1GV-0011-R1a-SM-CL559
60-69 years, male
6.0
GTEX-11ZTS-0011-R1a-SM-5BC71
60-69 years, female
5.9
GTEX-11GSO-0011-R1b-SM-57WD3
60-69 years, male
5.8
GTEX-14LZ3-0011-R1a-SM-69LP5
60-69 years, female
5.8
GTEX-1H3NZ-0011-R1a-SM-CKZP5
60-69 years, male
5.8
GTEX-17EVP-0011-R1a-SM-7DHLA
40-49 years, male
5.7
GTEX-15UF6-0011-R1a-SM-9QEGH
70-79 years, female
5.7
GTEX-1A8G6-0011-R1a-SM-7P8PC
60-69 years, male
5.7
GTEX-1B996-0011-R1b-SM-7P8PO
60-69 years, male
5.6
GTEX-11WQC-0011-R1b-SM-DO932
60-69 years, male
5.5
GTEX-1H4P4-0011-R1b-SM-CL54V
50-59 years, male
5.5
GTEX-NPJ8-0011-R1a-SM-33HCB
40-49 years, male
5.3
GTEX-13G51-0011-R1a-SM-5LZYR
60-69 years, male
5.0
GTEX-16XZZ-0011-R1a-SM-7LTAH
60-69 years, male
4.9
GTEX-13RTJ-0011-R1a-SM-5O9D9
60-69 years, male
4.8
GTEX-1BAJH-0011-R1a-SM-7P8SV
70-79 years, male
4.6
GTEX-1F6IF-0011-R1b-SM-9WG78
60-69 years, male
4.6
GTEX-1212Z-0011-R1b-SM-5BC72
60-69 years, male
4.4
GTEX-11ZVC-0011-R1b-SM-5BC6M
50-59 years, female
4.3
GTEX-12ZZX-0011-R1a-SM-5EQ6B
40-49 years, female
4.3
GTEX-QVUS-0011-R1A-SM-3GAD2
60-69 years, female
4.3
GTEX-183WM-0011-R1a-SM-718A8
70-79 years, female
3.6
GTEX-1H23P-0011-R1a-SM-ACKVC
60-69 years, male
3.6
GTEX-13NZ8-0011-R1b-SM-5KM3V
60-69 years, female
3.5
GTEX-13OW5-0011-R1b-SM-5L3GE
60-69 years, male
3.4
GTEX-11TUW-0011-R1a-SM-DO92S
60-69 years, male
3.2
GTEX-13OVL-0011-R1a-SM-5L3H5
50-59 years, male
3.0
GTEX-13QIC-0011-R1a-SM-5O9CJ
60-69 years, female
3.0
GTEX-14E7W-0011-R1b-SM-5YYAT
70-79 years, male
2.9
GTEX-UTHO-0011-R1A-SM-3GIJO
60-69 years, male
2.4
GTEX-18A6Q-0011-R1b-SM-731DI
60-69 years, male
2.2
GTEX-13NZA-0011-R1b-SM-5LUAF
60-69 years, male
2.0
GTEX-X4EP-0011-R1A-SM-3P624
60-69 years, female
1.2
GTEX-1CB4J-0011-R1a-SM-9WG64
60-69 years, male
0.8
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
17.2
Mouse sample
Sample description
nTPM
Entorhinal cortex nTPM: 17.2
Samples: 4
Max nTPM: 22.2
Min nTPM: 12.2
Sample A
Male
17.1
Sample B
Male
22.2
Sample C
Female
12.2
Sample D
Female
17.2
Hippocampal formation nTPM: 7.7
Samples: 4
Max nTPM: 9.1
Min nTPM: 7.0
Sample A
Male
9.1
Sample B
Male
7.0
Sample C
Female
7.2
Sample D
Female
7.6
HIPPOCAMPAL FORMATION - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.