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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
RPS10 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
1319.5
Number of samples
362
Samples
Sample
Description
TPM
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
5459.8
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
5450.7
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
5039.7
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
4411.8
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
4326.8
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
3942.6
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
3810.4
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
3592.8
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
3555.6
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
3549.2
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
3464.1
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
3410.8
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
3398.4
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
3375.6
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
3139.4
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
3119.5
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
3117.9
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
3080.7
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
3033.9
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
2947.4
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
2936.7
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
2868.0
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
2780.1
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
2768.3
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
2690.1
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
2609.6
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
2552.5
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
2498.8
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
2498.0
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
2477.6
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
2459.7
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
2436.4
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
2423.5
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
2369.8
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
2344.4
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
2311.5
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
2309.7
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
2303.6
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
2292.8
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
2234.2
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
2230.2
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
2217.0
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
2213.3
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
2208.5
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
2204.3
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
2195.7
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
2194.5
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
2180.2
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
2163.9
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
2133.9
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
2132.3
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
2120.6
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
2116.2
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
2107.5
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
2085.8
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
2082.0
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
2081.0
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
2060.2
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
2044.3
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
2005.7
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
1998.4
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
1955.0
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
1918.2
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
1898.3
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
1895.8
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
1893.8
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
1878.4
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
1869.5
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
1853.3
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
1838.7
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
1832.7
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
1831.1
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
1828.5
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
1822.0
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
1791.7
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
1774.3
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
1772.5
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
1767.9
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
1761.7
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
1731.3
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
1700.0
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
1686.8
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
1686.7
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
1674.4
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
1672.7
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
1672.6
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
1644.6
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
1625.6
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
1619.6
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
1615.5
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
1610.3
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
1602.9
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
1589.9
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
1585.8
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
1579.5
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
1578.5
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
1558.8
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
1549.6
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
1539.6
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
1519.5
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
1517.3
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
1511.8
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
1508.4
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
1500.9
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
1496.5
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
1491.3
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
1484.2
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
1481.2
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
1479.2
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
1468.1
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
1466.5
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
1456.3
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
1454.5
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
1453.3
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
1451.2
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
1432.2
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
1430.4
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
1426.5
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
1425.3
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
1425.0
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
1418.9
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
1412.0
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
1403.1
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
1399.9
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
1385.0
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
1378.4
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
1374.6
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
1372.6
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
1366.8
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
1350.2
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
1342.6
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
1334.2
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
1329.3
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
1327.9
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
1319.2
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
1313.3
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
1299.1
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
1295.2
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
1291.7
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
1288.1
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
1278.5
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
1275.5
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
1274.3
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
1267.9
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
1263.5
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
1252.0
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
1246.6
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
1240.1
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
1236.3
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
1236.1
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
1229.4
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
1218.8
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
1218.7
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
1210.2
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
1209.6
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
1200.7
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
1198.5
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
1189.3
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
1182.4
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
1181.7
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
1175.2
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
1173.4
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
1172.2
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
1167.6
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
1165.1
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
1164.9
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
1162.7
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
1158.1
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
1149.9
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
1142.8
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
1127.8
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
1119.6
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
1112.5
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
1107.0
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
1104.2
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
1087.2
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
1086.5
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
1086.3
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
1085.1
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
1068.5
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
1067.3
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
1064.7
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
1063.0
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
1063.0
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
1060.3
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
1058.0
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
1057.2
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
1055.0
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
1053.6
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
1050.8
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
1048.0
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
1037.9
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
1024.5
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
1022.9
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
1021.4
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
1017.4
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
1014.5
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
1014.3
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
1006.7
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
1004.2
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
994.9
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
987.9
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
985.9
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
983.2
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
980.9
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
978.1
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
976.4
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
975.4
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
973.5
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
962.7
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
956.5
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
951.8
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
950.6
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
942.8
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
942.1
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
940.4
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
938.7
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
930.5
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
928.5
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
917.7
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
914.7
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
913.8
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
905.7
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
904.5
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
895.8
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
888.9
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
884.5
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
877.8
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
877.4
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
874.4
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
874.3
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
873.4
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
872.8
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
870.5
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
867.6
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
864.1
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
852.5
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
851.9
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
848.0
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
844.5
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
843.2
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
843.2
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
843.2
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
839.2
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
838.5
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
837.8
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
832.5
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
829.9
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
829.0
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
828.8
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
826.7
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
826.7
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
819.1
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
814.9
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
810.3
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
809.3
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
807.1
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
804.5
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
803.1
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
802.7
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
799.9
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
797.1
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
796.4
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
791.0
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
787.3
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
786.4
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
785.6
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
785.6
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
782.8
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
782.0
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
778.8
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
777.6
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
773.3
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
768.9
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
767.2
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
765.0
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
759.3
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
757.9
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
744.8
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
741.5
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
731.2
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
721.6
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
720.9
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
720.1
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
718.9
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
717.7
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
706.5
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
699.8
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
698.3
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
690.0
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
689.3
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
684.7
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
683.6
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
674.9
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
673.2
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
668.4
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
667.5
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
664.9
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
663.4
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
662.6
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
655.3
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
647.6
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
645.8
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
640.2
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
638.2
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
633.6
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
627.5
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
626.7
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
625.7
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
623.8
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
622.9
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
618.2
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
615.3
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
604.0
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
602.0
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
601.9
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
600.2
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
599.5
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
591.0
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
587.4
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
582.9
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
581.7
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
580.5
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
577.2
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
573.8
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
573.1
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
568.7
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
565.3
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
563.3
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
563.2
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
562.7
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
559.1
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
550.5
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
548.9
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
545.4
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
537.1
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
507.1
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
499.8
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
499.8
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
498.8
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
498.3
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
498.3
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
491.2
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
488.9
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
486.4
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
482.3
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
481.4
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
481.2
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
479.6
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
478.7
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
454.6
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
449.7
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
437.1
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
435.4
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
433.4
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
416.5
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
410.2
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
397.3
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
390.7
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
382.9
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
376.2
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
RPS10 is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
793.4
Number of samples
231
Samples
Sample
Description
TPM
DO50785
0 years, male, NA, stage:4, dead, 90 days
6707.7
DO45285
0 years, male, NA, stage:3, alive, 480 days
3846.2
DO50814
0 years, male, NA, stage:3, alive, 420 days
3110.2
DO45097
0 years, male, NA, stage:3, alive, 1620 days
2800.7
DO50806
0 years, male, NA, stage:4, alive, 540 days
2594.1
DO23516
0 years, male, NA, stage:3, dead, 20 days
2518.5
DO23528
0 years, female, NA, stage:2, alive, 1020 days
2494.8
DO23519
0 years, male, NA, stage:3, alive, 630 days
2462.5
DO48723
0 years, male, NA, stage:1, alive, 600 days
2051.7
DO45303
0 years, female, NA, stage:3, alive, 990 days
1879.7
DO23515
0 years, male, NA, stage:2, alive, 1230 days
1856.4
DO45247
0 years, female, NA, stage:2, alive, 210 days
1791.1
DO50811
0 years, male, NA, stage:1, alive, 450 days
1744.8
DO48759
0 years, male, NA, stage:3, alive, 720 days
1695.8
DO48747
0 years, male, NA, stage:3, alive, 540 days
1665.9
DO45187
0 years, female, NA, stage:1, alive, 1260 days
1630.8
DO50839
0 years, female, NA, stage:3, alive, 330 days
1630.7
DO45189
0 years, female, NA, stage:2, alive, 1200 days
1592.3
DO45307
0 years, female, NA, stage:4, dead, 240 days
1543.0
DO48746
0 years, male, NA, stage:3, alive, 570 days
1524.1
DO50783
0 years, male, NA, stage:3, alive, 480 days
1480.1
DO23537
0 years, male, NA, stage:2, dead, 900 days
1474.7
DO50855
0 years, male, NA, stage:2, alive, 570 days
1433.2
DO45209
0 years, male, NA, stage:4, alive, 1350 days
1421.3
DO45289
0 years, female, NA, stage:3, alive, 360 days
1406.6
DO45199
0 years, female, NA, stage:2, alive, 1350 days
1375.3
DO45305
0 years, male, NA, stage:4, alive, 300 days
1368.3
DO48672
0 years, male, NA, stage:2, alive, 450 days
1356.0
DO45211
0 years, male, NA, stage:3, alive, 240 days
1300.0
DO45173
0 years, male, NA, stage:3, alive, 1170 days
1288.5
DO48737
0 years, male, NA, stage:1, alive, 720 days
1287.9
DO23511
0 years, female, NA, stage:3, dead, 180 days
1247.5
DO23508
0 years, female, NA, stage:2, alive, 390 days
1238.8
DO45161
0 years, male, NA, stage:2, dead, 540 days
1238.7
DO45269
0 years, male, NA, stage:3, alive, 750 days
1231.6
DO45267
0 years, male, NA, stage:3, dead, 570 days
1207.1
DO48706
0 years, male, NA, stage:2, alive, 870 days
1196.6
DO48715
0 years, female, NA, stage:2, dead, 690 days
1192.6
DO45193
0 years, female, NA, stage:4, dead, 120 days
1189.6
DO23545
0 years, male, NA, stage:2, dead, 570 days
1153.2
DO45093
0 years, male, NA, stage:2, dead, 720 days
1152.9
DO45251
0 years, female, NA, stage:2, alive, 900 days
1152.3
DO48730
0 years, female, NA, stage:2, alive, 630 days
1120.1
DO48741
0 years, male, NA, stage:3, alive, 240 days
1119.6
DO45221
0 years, female, NA, stage:4, dead, 390 days
1115.9
DO23525
0 years, male, NA, stage:4, alive, 1050 days
1106.2
DO45259
0 years, male, NA, stage:3, alive, 330 days
1096.8
DO45217
0 years, female, NA, stage:3, dead, 270 days
1083.7
DO23530
0 years, male, NA, stage:4, dead, 180 days
1079.8
DO45163
0 years, male, NA, stage:2, alive, 960 days
1078.0
DO45301
0 years, male, NA, stage:2, dead, 1440 days
1035.8
DO45299
0 years, female, NA, stage:1, alive, 1440 days
1011.1
DO23540
0 years, male, NA, stage:1, alive, 750 days
1007.4
DO50799
0 years, female, NA, stage:2, alive, 540 days
990.6
DO48697
0 years, female, NA, stage:2, dead, 810 days
961.8
DO45183
0 years, female, NA, stage:2, dead, 570 days
960.7
DO50859
0 years, male, NA, stage:2, alive, 180 days
954.4
DO45175
0 years, male, NA, stage:2, alive, 1140 days
951.4
DO45127
0 years, male, NA, stage:3, dead, 420 days
940.9
DO50809
0 years, male, NA, stage:3, dead, 720 days
921.4
DO48682
0 years, female, NA, stage:3, dead, 120 days
920.1
DO45131
0 years, male, NA, stage:4, dead, 360 days
909.3
DO45265
0 years, male, NA, stage:3, alive, 1020 days
877.3
DO45249
0 years, male, NA, stage:1, alive, 630 days
867.7
DO45179
0 years, female, NA, stage:2, alive, 600 days
866.3
DO45119
0 years, male, NA, stage:3, dead, 510 days
865.0
DO50825
0 years, male, NA, stage:2, alive, 390 days
859.4
DO50778
0 years, male, NA, stage:4, alive, 630 days
859.3
DO48677
0 years, male, NA, stage:3, alive, 1140 days
852.8
DO45219
0 years, male, NA, stage:2, alive, 1080 days
836.1
DO45103
0 years, male, NA, stage:3, alive, 450 days
831.3
DO45261
0 years, male, NA, stage:3, alive, 990 days
830.2
DO45191
0 years, female, NA, stage:2, alive, 1200 days
826.2
DO45277
0 years, male, NA, stage:3, alive, 600 days
821.6
DO45239
0 years, male, NA, stage:2, alive, 870 days
808.5
DO45165
0 years, male, NA, stage:2, alive, 690 days
807.4
DO23521
0 years, male, NA, stage:3, alive, 1110 days
805.6
DO23533
0 years, male, NA, stage:2, alive, 900 days
792.3
DO45135
0 years, male, NA, stage:1, alive, 1410 days
790.1
DO23526
0 years, male, NA, stage:3, alive, 1050 days
775.4
DO45092
0 years, male, NA, stage:4, dead, 1200 days
774.1
DO50805
0 years, male, NA, stage:2, alive, 690 days
769.8
DO45095
0 years, male, NA, stage:2, alive, 1620 days
763.5
DO50802
0 years, male, NA, stage:2, alive, 930 days
762.4
DO45257
0 years, male, NA, stage:3, alive, 810 days
756.9
DO48736
0 years, female, NA, stage:1, alive, 600 days
753.7
DO48757
0 years, female, NA, stage:3, alive, 480 days
749.8
DO23523
0 years, male, NA, stage:3, alive, 1080 days
748.1
DO45213
0 years, male, NA, stage:1, alive, 1200 days
745.1
DO45141
0 years, male, NA, stage:2, alive, 1320 days
741.9
DO48751
0 years, male, NA, stage:2, dead, 480 days
740.9
DO48681
0 years, male, NA, stage:2, alive, 900 days
735.5
DO45283
0 years, male, NA, stage:3, alive, 510 days
732.5
DO45091
0 years, male, NA, stage:2, dead, 1320 days
727.6
DO45237
0 years, male, NA, stage:2, alive, 900 days
727.3
DO50857
0 years, male, NA, stage:2, alive, 210 days
717.7
DO45297
0 years, female, NA, stage:4, dead, 1260 days
712.4
DO45225
0 years, male, NA, stage:1, alive, 1050 days
700.8
DO45203
0 years, female, NA, stage:2, alive, 1170 days
700.5
DO45145
0 years, male, NA, stage:3, dead, 60 days
685.8
DO50791
0 years, female, NA, stage:1, dead, 480 days
683.3
DO45287
0 years, male, NA, stage:1, alive, 390 days
676.5
DO50793
0 years, male, NA, stage:4, alive, 540 days
669.8
DO45149
0 years, female, NA, stage:2, alive, 1260 days
666.3
DO23539
0 years, male, NA, stage:1, alive, 1110 days
665.3
DO45117
0 years, female, NA, stage:2, dead, 1110 days
660.8
DO23536
0 years, male, NA, stage:2, alive, 930 days
660.1
DO45275
0 years, male, NA, stage:3, dead, 10 days
647.6
DO48725
0 years, male, NA, stage:1, alive, 780 days
647.5
DO48733
0 years, male, NA, stage:2, alive, 600 days
622.4
DO48732
0 years, male, NA, stage:3, alive, 630 days
621.4
DO45241
0 years, male, NA, stage:1, alive, 1080 days
621.1
DO45273
0 years, male, NA, stage:2, alive, 480 days
619.6
DO48727
0 years, female, NA, stage:2, dead, 390 days
615.1
DO50816
0 years, male, NA, stage:2, alive, 390 days
602.3
DO50817
0 years, male, NA, stage:2, alive, 390 days
602.1
DO45205
0 years, female, NA, stage:2, dead, 90 days
600.5
DO45227
0 years, female, NA, stage:2, alive, 1020 days
599.6
DO48712
0 years, male, NA, stage:2, alive, 810 days
599.2
DO45171
0 years, male, NA, stage:3, alive, 600 days
599.1
DO50822
0 years, male, NA, stage:2, alive, 510 days
596.0
DO45157
0 years, male, NA, stage:2, alive, 1980 days
594.8
DO50776
0 years, male, NA, stage:1, alive, 690 days
589.4
DO50808
0 years, male, NA, stage:2, alive, 570 days
586.5
DO50804
0 years, male, NA, stage:2, alive, 720 days
586.2
DO45255
0 years, male, NA, stage:3, alive, 720 days
581.6
DO45113
0 years, male, NA, stage:3, alive, 1560 days
575.4
DO45153
0 years, female, NA, stage:2, alive, 1380 days
571.5
DO50829
0 years, male, NA, stage:3, alive, 570 days
553.6
DO45185
0 years, male, NA, stage:2, alive, 600 days
553.6
DO45229
0 years, male, NA, stage:1, alive, 990 days
553.1
DO48679
0 years, male, NA, stage:2, alive, 1200 days
548.7
DO48717
0 years, male, NA, stage:4, dead, 180 days
546.8
DO48716
0 years, male, NA, stage:2, alive, 720 days
545.3
DO45139
0 years, male, NA, stage:3, alive, 1320 days
545.1
DO45143
0 years, male, NA, stage:3, alive, 1290 days
543.1
DO50850
0 years, male, NA, stage:3, alive, 720 days
542.6
DO45109
0 years, male, NA, stage:2, alive, 1590 days
536.7
DO23514
0 years, male, NA, stage:2, alive, 1290 days
532.2
DO50820
0 years, female, NA, stage:3, alive, 510 days
526.5
DO48700
0 years, female, NA, stage:2, alive, 810 days
520.4
DO48720
0 years, female, NA, stage:2, alive, 570 days
513.9
DO45169
0 years, male, NA, stage:3, alive, 1350 days
507.9
DO45281
0 years, male, NA, stage:4, alive, 750 days
507.3
DO45177
0 years, female, NA, stage:3, alive, 1260 days
507.0
DO45125
0 years, male, NA, stage:3, alive, 1680 days
504.6
DO50844
0 years, male, NA, stage:4, alive, 300 days
503.0
DO45253
0 years, male, NA, stage:2, alive, 870 days
501.7
DO45231
0 years, male, NA, stage:2, alive, 930 days
497.9
DO23510
0 years, female, NA, stage:2, alive, 870 days
497.8
DO50815
0 years, male, NA, stage:3, alive, 150 days
496.9
DO50840
0 years, male, NA, stage:2, alive, 330 days
493.7
DO50789
0 years, female, NA, stage:2, alive, 570 days
492.1
DO45279
0 years, male, NA, stage:3, alive, 1290 days
488.5
DO50819
0 years, female, NA, stage:2, alive, 510 days
488.4
DO48695
0 years, male, NA, stage:2, alive, 720 days
485.3
DO23529
0 years, male, NA, stage:4, alive, 930 days
475.5
DO23527
0 years, male, NA, stage:1, alive, 1050 days
471.2
DO45201
0 years, male, NA, stage:1, alive, 900 days
470.1
DO48719
0 years, male, NA, stage:2, alive, 690 days
469.8
DO50798
0 years, male, NA, stage:3, dead, 30 days
467.5
DO45223
0 years, male, NA, stage:4, alive, 1020 days
466.7
DO45121
0 years, male, NA, stage:3, alive, 1530 days
465.1
DO23538
0 years, male, NA, stage:2, alive, 450 days
454.9
DO48742
0 years, male, NA, stage:2, alive, 600 days
445.3
DO23547
0 years, male, NA, stage:1, alive, 1020 days
444.1
DO48728
0 years, female, NA, stage:2, alive, 150 days
439.8
DO45115
0 years, male, NA, stage:2, alive, 840 days
437.1
DO45233
0 years, male, NA, stage:3, alive, 900 days
436.5
DO45207
0 years, male, NA, stage:1, alive, 1050 days
435.6
DO50800
0 years, male, NA, stage:2, alive, 510 days
434.3
DO48743
0 years, female, NA, stage:2, alive, 570 days
431.8
DO23548
0 years, female, NA, stage:1, alive, 840 days
430.7
DO23542
0 years, male, NA, stage:3, alive, 960 days
430.1
DO50813
0 years, male, NA, stage:2, alive, 420 days
427.3
DO45181
0 years, female, NA, stage:2, alive, 1200 days
425.9
DO48674
0 years, male, NA, stage:2, alive, 1260 days
423.5
DO23524
0 years, female, NA, stage:2, alive, 1050 days
404.9
DO45133
0 years, male, NA, stage:3, dead, 660 days
404.9
DO50818
0 years, male, NA, stage:2, alive, 510 days
384.4
DO45155
0 years, male, NA, stage:2, alive, 2160 days
384.2
DO50845
0 years, male, NA, stage:3, alive, 210 days
383.7
DO50832
0 years, male, NA, stage:3, alive, 90 days
380.9
DO45243
0 years, female, NA, stage:3, alive, 930 days
375.1
DO227801
0 years, female, NA, stage:1, alive, 660 days
362.4
DO23532
0 years, female, NA, stage:1, alive, 960 days
360.2
DO23531
0 years, female, NA, stage:3, alive, 900 days
352.8
DO50774
0 years, female, NA, stage:2, alive, 720 days
352.4
DO23535
0 years, male, NA, stage:1, alive, 960 days
348.0
DO45137
0 years, male, NA, stage:1, alive, 1320 days
347.4
DO50807
0 years, male, NA, stage:1, alive, 540 days
344.5
DO48704
0 years, female, NA, stage:3, alive, 750 days
343.8
DO48701
0 years, male, NA, stage:2, alive, 780 days
343.0
DO45096
0 years, male, NA, stage:2, dead, 1290 days
341.4
DO23550
0 years, male, NA, stage:1, alive, 990 days
338.9
DO50803
0 years, female, NA, stage:1, alive, 540 days
335.3
DO23546
0 years, male, NA, stage:2, alive, 1050 days
332.0
DO45123
0 years, female, NA, stage:2, dead, 570 days
329.2
DO23543
0 years, male, NA, stage:2, alive, 1020 days
328.8
DO23552
0 years, female, NA, stage:1, alive, 810 days
327.4
DO23518
0 years, male, NA, stage:2, alive, 1320 days
326.7
DO50787
0 years, male, NA, stage:3, alive, 480 days
326.1
DO45159
0 years, male, NA, stage:3, alive, 1470 days
315.5
DO45094
0 years, male, NA, stage:3, alive, 1650 days
313.9
DO23549
0 years, male, NA, stage:3, alive, 990 days
309.4
DO48693
0 years, male, NA, stage:2, alive, 900 days
309.3
DO23509
0 years, male, NA, stage:3, dead, 780 days
308.0
DO45245
0 years, female, NA, stage:2, dead, 240 days
305.7
DO45235
0 years, female, NA, stage:1, alive, 900 days
304.9
DO23513
0 years, male, NA, stage:3, alive, 1200 days
302.8
DO45111
0 years, male, NA, stage:2, alive, 1590 days
296.8
DO48721
0 years, female, NA, stage:1, alive, 900 days
294.0
DO45215
0 years, male, NA, stage:2, alive, 1170 days
285.6
DO48761
0 years, male, NA, stage:2, alive, 870 days
283.1
DO45263
0 years, male, NA, stage:3, dead, 270 days
278.8
DO48760
0 years, female, NA, stage:2, alive, 690 days
277.1
DO45129
0 years, male, NA, stage:3, alive, 1470 days
267.4
DO23517
0 years, male, NA, stage:2, alive, 1200 days
266.2
DO45099
0 years, male, NA, stage:3, alive, 1590 days
263.6
DO227643
0 years, male, NA, stage:2, alive, 1260 days
262.2
DO23541
0 years, male, NA, stage:2, alive, 930 days
260.2
DO23512
0 years, male, NA, stage:1, alive, 1260 days
259.7
DO45197
0 years, male, NA, stage:2, alive, 1170 days
256.7
DO23544
0 years, male, NA, stage:2, alive, 960 days
212.8
DO23534
0 years, male, NA, stage:2, alive, 840 days
212.6
DO23551
0 years, male, NA, stage:3, dead, 150 days
210.5
DO45195
0 years, male, NA, stage:1, alive, 390 days
207.3
DO45101
0 years, male, NA, stage:2, alive, 1680 days
205.9
DO45167
0 years, male, NA, stage:2, dead, 1440 days
200.5
DO45107
0 years, female, NA, stage:2, alive, 1710 days
131.5
DO45105
0 years, male, NA, stage:1, alive, 1680 days
127.8
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LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
537
Tumor
0.4
557
Tumor
0.4
135
Tumor
0.4
367
Tumor
0.4
331
Tumor
0.4
327
Tumor
0.4
636
Normal
0.3
944
Normal
0.3
267
Tumor
0.3
743
Tumor
0.3
514
Normal
0.3
353
Tumor
0.3
1021
Tumor
0.3
851
Tumor
0.3
481
Tumor
0.3
965
Tumor
0.3
661
Tumor
0.3
393
Tumor
0.3
494
Normal
0.3
285
Tumor
0.3
918
Normal
0.3
955
Tumor
0.3
195
Tumor
0.3
232
Normal
0.3
938
Normal
0.3
937
Tumor
0.3
926
Normal
0.3
113
Tumor
0.3
912
Normal
0.3
528
Normal
0.3
922
Normal
0.3
696
Normal
0.2
448
Normal
0.2
191
Tumor
0.2
815
Tumor
0.2
376
Normal
0.2
1046
Normal
0.2
545
Tumor
0.2
1044
Normal
0.2
554
Normal
0.2
864
Normal
0.2
484
Normal
0.2
964
Normal
0.2
413
Tumor
0.2
136
Normal
0.2
221
Tumor
0.2
524
Normal
0.2
727
Tumor
0.2
866
Normal
0.2
145
Tumor
0.2
223
Tumor
0.2
777
Tumor
0.2
387
Tumor
0.2
395
Tumor
0.2
724
Normal
0.2
533
Tumor
0.2
385
Tumor
0.2
462
Normal
0.2
984
Normal
0.2
978
Normal
0.2
523
Tumor
0.2
1014
Normal
0.2
518
Normal
0.2
957
Tumor
0.2
567
Tumor
0.2
564
Normal
0.2
473
Tumor
0.2
664
Normal
0.2
568
Normal
0.2
546
Normal
0.2
516
Normal
0.2
1042
Normal
0.2
412
Normal
0.2
824
Normal
0.2
131
Tumor
0.2
983
Tumor
0.2
358
Normal
0.2
756
Normal
0.2
222
Normal
0.2
231
Tumor
0.2
526
Normal
0.2
218
Normal
0.2
534
Normal
0.2
728
Normal
0.2
967
Tumor
0.2
662
Normal
0.2
818
Normal
0.2
286
Normal
0.2
1016
Normal
0.2
214
Normal
0.2
858
Normal
0.2
958
Normal
0.2
467
Tumor
0.2
786
Normal
0.2
916
Normal
0.2
628
Normal
0.2
445
Tumor
0.2
172
Normal
0.2
332
Normal
0.2
137
Tumor
0.2
527
Tumor
0.2
515
Tumor
0.2
714
Normal
0.1
162
Normal
0.1
553
Tumor
0.1
488
Normal
0.1
966
Normal
0.1
427
Tumor
0.1
642
Normal
0.1
698
Normal
0.1
368
Normal
0.1
982
Normal
0.1
672
Normal
0.1
356
Normal
0.1
482
Normal
0.1
513
Tumor
0.1
352
Normal
0.1
671
Tumor
0.1
426
Normal
0.1
697
Tumor
0.1
862
Normal
0.1
342
Normal
0.1
298
Normal
0.1
422
Normal
0.1
517
Tumor
0.1
443
Tumor
0.1
618
Normal
0.1
132
Normal
0.1
362
Normal
0.1
648
Normal
0.1
738
Normal
0.1
284
Normal
0.1
852
Normal
0.1
536
Normal
0.1
411
Tumor
0.1
1032
Normal
0.1
868
Normal
0.1
186
Normal
0.1
196
Normal
0.1
478
Normal
0.1
616
Normal
0.1
414
Normal
0.1
138
Normal
0.1
954
Normal
0.1
228
Normal
0.1
472
Normal
0.1
424
Normal
0.1
446
Normal
0.1
474
Normal
0.1
723
Tumor
0.1
742
Normal
0.1
392
Normal
0.1
421
Tumor
0.1
924
Normal
0.1
882
Normal
0.1
351
Tumor
0.1
1027
Tumor
0.1
666
Normal
0.1
497
Tumor
0.1
271
Tumor
0.1
956
Normal
0.1
436
Normal
0.1
913
Tumor
0.1
968
Normal
0.1
148
Normal
0.1
257
Tumor
0.1
212
Normal
0.1
415
Tumor
0.1
951
Tumor
0.1
721
Tumor
0.1
146
Normal
0.1
1026
Normal
0.1
217
Tumor
0.1
355
Tumor
0.1
258
Normal
0.1
778
Normal
0.1
745
Tumor
0.1
1025
Tumor
0.1
573
Tumor
0.1
722
Normal
0.1
884
Normal
0.1
434
Normal
0.1
433
Tumor
0.1
923
Tumor
0.1
112
Tumor
0.1
396
Normal
0.1
272
Normal
0.1
314
Normal
0.1
981
Tumor
0.1
558
Normal
0.1
571
Tumor
0.1
431
Tumor
0.1
344
Normal
0.1
262
Normal
0.1
432
Normal
0.1
328
Normal
0.1
952
Normal
0.1
364
Normal
0.1
572
Normal
0.1
357
Tumor
0.1
425
Tumor
0.1
713
Tumor
0.1
535
Tumor
0.1
1022
Normal
0.1
127
Tumor
0.1
665
Tumor
0.1
394
Normal
0.1
685
Tumor
0.1
366
Normal
0.1
213
Tumor
0.1
746
Normal
0.1
188
Normal
0.1
361
Tumor
0.1
857
Tumor
0.1
953
Tumor
0.1
492
Normal
0.1
141
Tumor
0.1
435
Tumor
0.1
477
Tumor
0.1
525
Tumor
0.1
466
Normal
0.1
187
Tumor
0.1
744
Normal
0.1
277
Tumor
0.1
1031
Tumor
0.1
817
Tumor
0.1
423
Tumor
0.1
278
Normal
0.1
142
Normal
0.1
663
Tumor
0.0
384
Normal
0.0
268
Normal
0.0
963
Tumor
0.0
428
Normal
0.0
865
Tumor
0.0
312
Normal
0.0
647
Tumor
0.0
128
Normal
0.0
785
Tumor
0.0
224
Normal
0.0
917
Tumor
0.0
365
Tumor
0.0
354
Normal
0.0
1028
Normal
0.0
447
Tumor
0.0
111
Normal
0.0
227
Tumor
0.0
375
Tumor
0.0
686
Normal
0.0
615
Tumor
0.0
737
Tumor
0.0
538
Normal
0.0
816
Normal
0.0
617
Tumor
0.0
363
Tumor
0.0
444
Normal
0.0
461
Tumor
0.0
878
Normal
0.0
716
Normal
0.0
341
Tumor
0.0
171
Tumor
0.0
873
Tumor
0.0
343
Tumor
0.0
471
Tumor
0.0
416
Normal
0.0
976
Normal
0.0
574
Normal
0.0
452
Normal
0.0
147
Tumor
0.0
465
Tumor
0.0
1043
Tumor
0.0
814
Normal
0.0
388
Normal
0.0
943
Tumor
0.0
755
Tumor
0.0
493
Tumor
0.0
386
Normal
0.0
451
Tumor
0.0
114
Normal
0.0
464
Normal
0.0
1015
Tumor
0.0
468
Normal
0.0
635
Tumor
0.0
925
Tumor
0.0
261
Tumor
0.0
185
Tumor
0.0
874
Normal
0.0
921
Tumor
0.0
861
Tumor
0.0
391
Tumor
0.0
867
Tumor
0.0
915
Tumor
0.0
563
Tumor
0.0
715
Tumor
0.0
914
Normal
0.0
975
Tumor
0.0
881
Tumor
-0.1
124
Normal
-0.1
813
Tumor
-0.1
695
Tumor
-0.1
313
Tumor
-0.1
161
Tumor
-0.1
883
Tumor
-0.1
123
Tumor
-0.1
863
Tumor
-0.1
126
Normal
-0.1
641
Tumor
-0.1
297
Tumor
-0.1
483
Tumor
-0.1
192
Normal
-0.1
456
Normal
-0.1
498
Normal
-0.1
877
Tumor
-0.1
463
Tumor
-0.1
383
Tumor
-0.1
823
Tumor
-0.1
1045
Tumor
-0.1
487
Tumor
-0.1
1041
Tumor
-0.1
125
Tumor
-0.1
1013
Tumor
-0.2
455
Tumor
-0.2
977
Tumor
-0.2
211
Tumor
-0.2
283
Tumor
-0.2
491
Tumor
-0.2
627
Tumor
-0.2
311
Tumor
-0.2
911
Tumor
-0.3
741
Tumor
-0.3
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.