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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
STX16 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
10.7
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
65.0
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
41.6
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
40.5
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
30.3
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
27.2
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
26.7
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
26.4
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
24.8
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
24.3
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
23.5
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
23.4
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
23.1
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
22.3
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
20.4
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
20.4
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
20.3
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
20.2
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
19.9
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
19.8
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
19.8
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
19.7
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
19.6
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
19.4
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
19.2
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
19.1
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
18.9
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
18.8
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
18.2
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
18.1
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
17.8
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
17.8
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
17.7
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
17.7
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
17.6
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
17.5
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
17.3
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
17.1
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
17.1
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
16.9
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
16.8
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
16.6
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
16.3
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
16.2
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
16.0
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
16.0
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
15.9
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
15.8
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
15.8
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
15.8
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
15.7
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
15.6
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
15.6
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
15.5
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
15.5
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
15.5
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
15.3
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
15.3
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
15.2
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
15.2
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
15.0
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
15.0
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
14.9
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
14.9
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
14.8
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
14.6
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
14.6
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
14.5
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
14.4
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
14.4
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
14.4
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
14.2
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
14.2
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
14.1
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
14.1
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
14.1
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
14.0
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
13.9
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
13.9
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
13.9
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
13.8
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
13.8
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
13.8
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
13.7
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
13.7
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
13.6
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
13.5
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
13.5
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
13.5
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
13.4
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
13.4
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
13.4
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
13.3
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
13.3
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
13.3
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
13.2
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
13.2
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
13.1
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
13.1
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
13.1
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
13.0
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
12.9
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
12.9
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
12.9
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
12.9
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
12.9
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
12.8
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
12.8
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
12.8
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
12.8
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
12.7
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
12.7
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
12.7
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
12.5
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
12.5
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
12.5
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
12.5
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
12.4
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
12.4
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
12.4
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
12.3
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
12.3
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
12.3
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
12.2
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
12.1
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
12.1
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
11.9
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
11.9
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
11.9
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
11.9
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
11.8
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
11.8
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
11.8
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
11.8
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
11.7
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
11.7
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
11.7
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
11.6
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
11.6
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
11.6
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
11.6
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
11.4
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
11.4
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
11.3
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
11.2
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
11.2
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
11.1
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
11.0
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
11.0
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
11.0
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
11.0
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
11.0
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
11.0
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
10.9
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
10.9
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
10.9
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
10.8
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
10.8
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
10.8
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
10.7
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
10.7
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
10.6
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
10.6
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
10.6
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
10.6
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
10.6
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
10.4
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
10.4
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
10.4
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
10.4
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
10.4
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
10.4
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
10.3
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
10.2
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
10.2
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
10.1
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
10.1
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
10.1
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
10.1
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
10.0
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
10.0
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
9.9
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
9.9
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
9.9
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
9.9
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
9.8
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
9.8
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
9.8
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
9.8
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
9.7
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
9.7
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
9.7
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
9.6
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
9.6
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
9.6
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
9.6
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
9.5
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
9.5
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
9.5
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
9.4
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
9.4
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
9.3
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
9.3
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
9.3
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
9.3
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
9.3
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
9.0
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
9.0
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
8.9
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
8.9
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
8.9
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
8.8
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
8.8
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
8.7
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
8.7
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
8.6
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
8.6
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
8.6
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
8.6
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
8.5
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
8.5
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
8.5
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
8.4
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
8.4
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
8.4
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
8.4
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
8.3
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
8.3
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
8.2
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
8.2
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
8.2
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
8.2
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
8.1
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
8.1
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
8.0
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
8.0
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
8.0
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
8.0
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
7.9
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
7.9
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
7.9
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
7.9
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
7.8
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
7.8
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
7.7
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
7.7
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
7.7
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
7.7
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
7.7
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
7.6
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
7.6
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
7.6
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
7.5
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
7.5
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
7.5
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
7.5
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
7.5
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
7.4
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
7.4
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
7.4
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
7.3
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
7.3
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
7.3
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
7.3
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
7.2
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
7.2
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
7.2
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
7.1
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
7.0
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
7.0
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
7.0
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
7.0
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
6.9
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
6.9
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
6.8
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
6.8
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
6.8
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
6.7
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
6.7
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
6.7
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
6.7
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
6.6
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
6.6
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
6.6
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
6.6
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
6.5
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
6.4
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
6.4
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
6.3
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
6.3
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
6.3
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
6.3
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
6.3
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
6.2
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
6.2
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
6.2
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
6.2
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
6.1
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
6.1
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
6.1
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
6.0
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
6.0
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
6.0
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
6.0
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
5.9
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
5.9
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
5.8
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
5.8
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
5.7
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
5.7
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
5.6
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
5.6
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
5.5
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
5.5
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
5.5
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
5.3
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
5.2
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
5.1
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
5.0
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
5.0
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
5.0
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
5.0
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
5.0
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
4.8
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
4.8
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
4.8
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
4.8
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
4.8
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
4.7
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
4.7
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
4.6
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
4.6
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
4.6
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
4.6
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
4.6
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
4.6
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
4.5
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
4.5
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
4.3
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
4.2
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
4.2
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
4.2
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
4.0
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
4.0
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
4.0
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
3.9
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
3.6
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
3.4
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
3.4
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
3.3
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
3.0
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
2.9
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
2.8
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
2.7
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
2.6
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
2.4
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
2.4
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
2.3
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
2.3
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
2.2
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
1.9
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
1.8
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
STX16 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
27.9
Number of samples
231
Samples
Sample
Description
TPM
DO45273
0 years, male, NA, stage:2, alive, 480 days
101.3
DO48732
0 years, male, NA, stage:3, alive, 630 days
96.2
DO23547
0 years, male, NA, stage:1, alive, 1020 days
81.6
DO50845
0 years, male, NA, stage:3, alive, 210 days
80.4
DO50791
0 years, female, NA, stage:1, dead, 480 days
69.6
DO23532
0 years, female, NA, stage:1, alive, 960 days
68.5
DO45197
0 years, male, NA, stage:2, alive, 1170 days
68.2
DO23543
0 years, male, NA, stage:2, alive, 1020 days
65.1
DO50815
0 years, male, NA, stage:3, alive, 150 days
64.8
DO23534
0 years, male, NA, stage:2, alive, 840 days
63.3
DO45127
0 years, male, NA, stage:3, dead, 420 days
58.8
DO45287
0 years, male, NA, stage:1, alive, 390 days
58.6
DO23526
0 years, male, NA, stage:3, alive, 1050 days
57.5
DO23546
0 years, male, NA, stage:2, alive, 1050 days
56.3
DO45301
0 years, male, NA, stage:2, dead, 1440 days
56.2
DO45259
0 years, male, NA, stage:3, alive, 330 days
55.8
DO45283
0 years, male, NA, stage:3, alive, 510 days
54.2
DO50840
0 years, male, NA, stage:2, alive, 330 days
53.2
DO23512
0 years, male, NA, stage:1, alive, 1260 days
50.1
DO45249
0 years, male, NA, stage:1, alive, 630 days
48.6
DO50799
0 years, female, NA, stage:2, alive, 540 days
48.3
DO23549
0 years, male, NA, stage:3, alive, 990 days
46.4
DO45193
0 years, female, NA, stage:4, dead, 120 days
45.9
DO45141
0 years, male, NA, stage:2, alive, 1320 days
45.1
DO50816
0 years, male, NA, stage:2, alive, 390 days
44.1
DO45305
0 years, male, NA, stage:4, alive, 300 days
43.8
DO45125
0 years, male, NA, stage:3, alive, 1680 days
43.4
DO45245
0 years, female, NA, stage:2, dead, 240 days
42.6
DO23513
0 years, male, NA, stage:3, alive, 1200 days
42.6
DO45185
0 years, male, NA, stage:2, alive, 600 days
42.5
DO45241
0 years, male, NA, stage:1, alive, 1080 days
42.3
DO45105
0 years, male, NA, stage:1, alive, 1680 days
41.3
DO45215
0 years, male, NA, stage:2, alive, 1170 days
41.2
DO23548
0 years, female, NA, stage:1, alive, 840 days
40.5
DO45107
0 years, female, NA, stage:2, alive, 1710 days
40.3
DO45267
0 years, male, NA, stage:3, dead, 570 days
40.1
DO45243
0 years, female, NA, stage:3, alive, 930 days
38.6
DO45277
0 years, male, NA, stage:3, alive, 600 days
38.1
DO50813
0 years, male, NA, stage:2, alive, 420 days
37.6
DO48730
0 years, female, NA, stage:2, alive, 630 days
37.4
DO45213
0 years, male, NA, stage:1, alive, 1200 days
37.0
DO45297
0 years, female, NA, stage:4, dead, 1260 days
36.7
DO48737
0 years, male, NA, stage:1, alive, 720 days
36.6
DO48721
0 years, female, NA, stage:1, alive, 900 days
36.6
DO23523
0 years, male, NA, stage:3, alive, 1080 days
36.5
DO23552
0 years, female, NA, stage:1, alive, 810 days
36.3
DO45251
0 years, female, NA, stage:2, alive, 900 days
36.3
DO45207
0 years, male, NA, stage:1, alive, 1050 days
35.9
DO23540
0 years, male, NA, stage:1, alive, 750 days
35.7
DO50844
0 years, male, NA, stage:4, alive, 300 days
35.4
DO45219
0 years, male, NA, stage:2, alive, 1080 days
35.2
DO50787
0 years, male, NA, stage:3, alive, 480 days
35.1
DO23515
0 years, male, NA, stage:2, alive, 1230 days
34.0
DO23544
0 years, male, NA, stage:2, alive, 960 days
33.9
DO23539
0 years, male, NA, stage:1, alive, 1110 days
33.9
DO50811
0 years, male, NA, stage:1, alive, 450 days
33.6
DO50855
0 years, male, NA, stage:2, alive, 570 days
33.1
DO45253
0 years, male, NA, stage:2, alive, 870 days
33.1
DO45279
0 years, male, NA, stage:3, alive, 1290 days
33.0
DO23537
0 years, male, NA, stage:2, dead, 900 days
32.9
DO48716
0 years, male, NA, stage:2, alive, 720 days
32.7
DO45225
0 years, male, NA, stage:1, alive, 1050 days
32.7
DO48720
0 years, female, NA, stage:2, alive, 570 days
32.5
DO48736
0 years, female, NA, stage:1, alive, 600 days
32.2
DO23521
0 years, male, NA, stage:3, alive, 1110 days
32.2
DO45205
0 years, female, NA, stage:2, dead, 90 days
32.0
DO45281
0 years, male, NA, stage:4, alive, 750 days
31.9
DO48712
0 years, male, NA, stage:2, alive, 810 days
31.8
DO45173
0 years, male, NA, stage:3, alive, 1170 days
31.6
DO45265
0 years, male, NA, stage:3, alive, 1020 days
31.6
DO48728
0 years, female, NA, stage:2, alive, 150 days
31.5
DO45159
0 years, male, NA, stage:3, alive, 1470 days
31.4
DO48697
0 years, female, NA, stage:2, dead, 810 days
31.2
DO45257
0 years, male, NA, stage:3, alive, 810 days
31.2
DO45299
0 years, female, NA, stage:1, alive, 1440 days
31.2
DO45101
0 years, male, NA, stage:2, alive, 1680 days
30.9
DO23510
0 years, female, NA, stage:2, alive, 870 days
30.6
DO45145
0 years, male, NA, stage:3, dead, 60 days
30.5
DO45115
0 years, male, NA, stage:2, alive, 840 days
30.5
DO45189
0 years, female, NA, stage:2, alive, 1200 days
30.4
DO45099
0 years, male, NA, stage:3, alive, 1590 days
30.4
DO45303
0 years, female, NA, stage:3, alive, 990 days
30.3
DO50809
0 years, male, NA, stage:3, dead, 720 days
30.2
DO45135
0 years, male, NA, stage:1, alive, 1410 days
29.5
DO45157
0 years, male, NA, stage:2, alive, 1980 days
29.1
DO48693
0 years, male, NA, stage:2, alive, 900 days
28.8
DO23514
0 years, male, NA, stage:2, alive, 1290 days
28.8
DO45137
0 years, male, NA, stage:1, alive, 1320 days
28.5
DO45143
0 years, male, NA, stage:3, alive, 1290 days
28.5
DO45209
0 years, male, NA, stage:4, alive, 1350 days
28.4
DO45155
0 years, male, NA, stage:2, alive, 2160 days
28.2
DO45153
0 years, female, NA, stage:2, alive, 1380 days
28.1
DO45123
0 years, female, NA, stage:2, dead, 570 days
28.1
DO50800
0 years, male, NA, stage:2, alive, 510 days
28.0
DO50802
0 years, male, NA, stage:2, alive, 930 days
27.8
DO48746
0 years, male, NA, stage:3, alive, 570 days
27.6
DO45217
0 years, female, NA, stage:3, dead, 270 days
27.6
DO45289
0 years, female, NA, stage:3, alive, 360 days
27.3
DO227643
0 years, male, NA, stage:2, alive, 1260 days
27.2
DO45201
0 years, male, NA, stage:1, alive, 900 days
27.2
DO45307
0 years, female, NA, stage:4, dead, 240 days
26.9
DO45239
0 years, male, NA, stage:2, alive, 870 days
26.4
DO23530
0 years, male, NA, stage:4, dead, 180 days
26.2
DO45139
0 years, male, NA, stage:3, alive, 1320 days
26.1
DO50820
0 years, female, NA, stage:3, alive, 510 days
25.9
DO50817
0 years, male, NA, stage:2, alive, 390 days
25.9
DO23535
0 years, male, NA, stage:1, alive, 960 days
25.7
DO50798
0 years, male, NA, stage:3, dead, 30 days
25.7
DO45269
0 years, male, NA, stage:3, alive, 750 days
25.6
DO45203
0 years, female, NA, stage:2, alive, 1170 days
25.6
DO45223
0 years, male, NA, stage:4, alive, 1020 days
25.3
DO50803
0 years, female, NA, stage:1, alive, 540 days
25.3
DO23545
0 years, male, NA, stage:2, dead, 570 days
25.0
DO45096
0 years, male, NA, stage:2, dead, 1290 days
24.5
DO45165
0 years, male, NA, stage:2, alive, 690 days
24.2
DO23525
0 years, male, NA, stage:4, alive, 1050 days
24.2
DO23533
0 years, male, NA, stage:2, alive, 900 days
24.1
DO48743
0 years, female, NA, stage:2, alive, 570 days
23.9
DO23529
0 years, male, NA, stage:4, alive, 930 days
23.8
DO45263
0 years, male, NA, stage:3, dead, 270 days
23.7
DO48682
0 years, female, NA, stage:3, dead, 120 days
23.6
DO50819
0 years, female, NA, stage:2, alive, 510 days
23.5
DO45233
0 years, male, NA, stage:3, alive, 900 days
23.5
DO48757
0 years, female, NA, stage:3, alive, 480 days
23.3
DO50859
0 years, male, NA, stage:2, alive, 180 days
23.3
DO45092
0 years, male, NA, stage:4, dead, 1200 days
23.1
DO48700
0 years, female, NA, stage:2, alive, 810 days
23.0
DO45221
0 years, female, NA, stage:4, dead, 390 days
22.7
DO23519
0 years, male, NA, stage:3, alive, 630 days
22.5
DO48717
0 years, male, NA, stage:4, dead, 180 days
22.5
DO50778
0 years, male, NA, stage:4, alive, 630 days
22.4
DO23542
0 years, male, NA, stage:3, alive, 960 days
22.3
DO45103
0 years, male, NA, stage:3, alive, 450 days
22.2
DO45235
0 years, female, NA, stage:1, alive, 900 days
22.1
DO45179
0 years, female, NA, stage:2, alive, 600 days
22.1
DO227801
0 years, female, NA, stage:1, alive, 660 days
21.9
DO45121
0 years, male, NA, stage:3, alive, 1530 days
21.8
DO50822
0 years, male, NA, stage:2, alive, 510 days
21.5
DO45191
0 years, female, NA, stage:2, alive, 1200 days
21.4
DO23550
0 years, male, NA, stage:1, alive, 990 days
21.3
DO48751
0 years, male, NA, stage:2, dead, 480 days
20.9
DO48725
0 years, male, NA, stage:1, alive, 780 days
20.8
DO50793
0 years, male, NA, stage:4, alive, 540 days
20.6
DO23541
0 years, male, NA, stage:2, alive, 930 days
20.6
DO45091
0 years, male, NA, stage:2, dead, 1320 days
20.5
DO45094
0 years, male, NA, stage:3, alive, 1650 days
20.4
DO45229
0 years, male, NA, stage:1, alive, 990 days
20.3
DO48701
0 years, male, NA, stage:2, alive, 780 days
20.3
DO48733
0 years, male, NA, stage:2, alive, 600 days
20.2
DO45133
0 years, male, NA, stage:3, dead, 660 days
20.0
DO45149
0 years, female, NA, stage:2, alive, 1260 days
20.0
DO50857
0 years, male, NA, stage:2, alive, 210 days
20.0
DO45181
0 years, female, NA, stage:2, alive, 1200 days
19.9
DO23527
0 years, male, NA, stage:1, alive, 1050 days
19.4
DO45211
0 years, male, NA, stage:3, alive, 240 days
19.3
DO50774
0 years, female, NA, stage:2, alive, 720 days
19.3
DO45275
0 years, male, NA, stage:3, dead, 10 days
19.3
DO23518
0 years, male, NA, stage:2, alive, 1320 days
19.3
DO45095
0 years, male, NA, stage:2, alive, 1620 days
19.3
DO45117
0 years, female, NA, stage:2, dead, 1110 days
19.2
DO23509
0 years, male, NA, stage:3, dead, 780 days
19.2
DO45113
0 years, male, NA, stage:3, alive, 1560 days
19.1
DO45111
0 years, male, NA, stage:2, alive, 1590 days
19.1
DO45167
0 years, male, NA, stage:2, dead, 1440 days
19.0
DO45131
0 years, male, NA, stage:4, dead, 360 days
18.9
DO48677
0 years, male, NA, stage:3, alive, 1140 days
18.7
DO50818
0 years, male, NA, stage:2, alive, 510 days
18.6
DO50806
0 years, male, NA, stage:4, alive, 540 days
18.6
DO48695
0 years, male, NA, stage:2, alive, 720 days
18.5
DO45237
0 years, male, NA, stage:2, alive, 900 days
18.4
DO48681
0 years, male, NA, stage:2, alive, 900 days
18.3
DO23528
0 years, female, NA, stage:2, alive, 1020 days
18.3
DO45231
0 years, male, NA, stage:2, alive, 930 days
18.2
DO48719
0 years, male, NA, stage:2, alive, 690 days
18.1
DO50804
0 years, male, NA, stage:2, alive, 720 days
17.9
DO48672
0 years, male, NA, stage:2, alive, 450 days
17.8
DO48723
0 years, male, NA, stage:1, alive, 600 days
17.7
DO50785
0 years, male, NA, stage:4, dead, 90 days
17.7
DO23536
0 years, male, NA, stage:2, alive, 930 days
17.6
DO48679
0 years, male, NA, stage:2, alive, 1200 days
17.6
DO23517
0 years, male, NA, stage:2, alive, 1200 days
17.5
DO48761
0 years, male, NA, stage:2, alive, 870 days
17.2
DO45227
0 years, female, NA, stage:2, alive, 1020 days
17.2
DO45161
0 years, male, NA, stage:2, dead, 540 days
16.9
DO45171
0 years, male, NA, stage:3, alive, 600 days
16.7
DO45175
0 years, male, NA, stage:2, alive, 1140 days
16.6
DO50805
0 years, male, NA, stage:2, alive, 690 days
16.5
DO48742
0 years, male, NA, stage:2, alive, 600 days
16.5
DO23531
0 years, female, NA, stage:3, alive, 900 days
16.4
DO45109
0 years, male, NA, stage:2, alive, 1590 days
16.1
DO48715
0 years, female, NA, stage:2, dead, 690 days
15.8
DO45195
0 years, male, NA, stage:1, alive, 390 days
15.8
DO23516
0 years, male, NA, stage:3, dead, 20 days
15.6
DO45163
0 years, male, NA, stage:2, alive, 960 days
15.2
DO50807
0 years, male, NA, stage:1, alive, 540 days
15.2
DO45169
0 years, male, NA, stage:3, alive, 1350 days
15.2
DO45187
0 years, female, NA, stage:1, alive, 1260 days
15.1
DO23538
0 years, male, NA, stage:2, alive, 450 days
15.0
DO48706
0 years, male, NA, stage:2, alive, 870 days
15.0
DO23551
0 years, male, NA, stage:3, dead, 150 days
15.0
DO50808
0 years, male, NA, stage:2, alive, 570 days
14.9
DO50825
0 years, male, NA, stage:2, alive, 390 days
14.8
DO23524
0 years, female, NA, stage:2, alive, 1050 days
14.7
DO50850
0 years, male, NA, stage:3, alive, 720 days
14.5
DO45177
0 years, female, NA, stage:3, alive, 1260 days
14.4
DO45255
0 years, male, NA, stage:3, alive, 720 days
14.1
DO50789
0 years, female, NA, stage:2, alive, 570 days
14.0
DO45261
0 years, male, NA, stage:3, alive, 990 days
13.9
DO45183
0 years, female, NA, stage:2, dead, 570 days
13.9
DO48727
0 years, female, NA, stage:2, dead, 390 days
13.4
DO48704
0 years, female, NA, stage:3, alive, 750 days
13.4
DO50783
0 years, male, NA, stage:3, alive, 480 days
13.2
DO50814
0 years, male, NA, stage:3, alive, 420 days
13.1
DO50776
0 years, male, NA, stage:1, alive, 690 days
12.9
DO45129
0 years, male, NA, stage:3, alive, 1470 days
12.7
DO50829
0 years, male, NA, stage:3, alive, 570 days
11.8
DO48759
0 years, male, NA, stage:3, alive, 720 days
11.7
DO48747
0 years, male, NA, stage:3, alive, 540 days
11.3
DO48760
0 years, female, NA, stage:2, alive, 690 days
11.2
DO45285
0 years, male, NA, stage:3, alive, 480 days
10.9
DO45247
0 years, female, NA, stage:2, alive, 210 days
10.9
DO48741
0 years, male, NA, stage:3, alive, 240 days
10.9
DO45199
0 years, female, NA, stage:2, alive, 1350 days
10.7
DO45097
0 years, male, NA, stage:3, alive, 1620 days
10.4
DO23508
0 years, female, NA, stage:2, alive, 390 days
10.3
DO45119
0 years, male, NA, stage:3, dead, 510 days
9.8
DO50832
0 years, male, NA, stage:3, alive, 90 days
9.7
DO48674
0 years, male, NA, stage:2, alive, 1260 days
9.3
DO50839
0 years, female, NA, stage:3, alive, 330 days
6.6
DO45093
0 years, male, NA, stage:2, dead, 720 days
5.4
DO23511
0 years, female, NA, stage:3, dead, 180 days
4.1
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
545
Tumor
1.1
435
Tumor
1.0
527
Tumor
1.0
471
Tumor
0.8
331
Tumor
0.8
743
Tumor
0.8
533
Tumor
0.8
445
Tumor
0.8
351
Tumor
0.8
327
Tumor
0.7
271
Tumor
0.7
411
Tumor
0.7
877
Tumor
0.7
1025
Tumor
0.7
113
Tumor
0.7
191
Tumor
0.7
217
Tumor
0.6
535
Tumor
0.6
227
Tumor
0.5
145
Tumor
0.5
967
Tumor
0.5
817
Tumor
0.5
367
Tumor
0.5
211
Tumor
0.5
467
Tumor
0.5
221
Tumor
0.5
883
Tumor
0.5
131
Tumor
0.5
343
Tumor
0.5
357
Tumor
0.5
395
Tumor
0.5
553
Tumor
0.5
953
Tumor
0.5
1027
Tumor
0.4
517
Tumor
0.4
1031
Tumor
0.4
851
Tumor
0.4
147
Tumor
0.4
665
Tumor
0.4
433
Tumor
0.4
617
Tumor
0.4
567
Tumor
0.4
925
Tumor
0.4
745
Tumor
0.4
713
Tumor
0.4
1021
Tumor
0.4
218
Normal
0.3
983
Tumor
0.3
695
Tumor
0.3
187
Tumor
0.3
965
Tumor
0.3
358
Normal
0.3
727
Tumor
0.3
671
Tumor
0.3
963
Tumor
0.3
267
Tumor
0.3
277
Tumor
0.3
573
Tumor
0.3
313
Tumor
0.3
777
Tumor
0.3
137
Tumor
0.3
385
Tumor
0.3
468
Normal
0.3
353
Tumor
0.3
724
Normal
0.3
571
Tumor
0.3
127
Tumor
0.3
957
Tumor
0.3
171
Tumor
0.3
136
Normal
0.3
257
Tumor
0.3
443
Tumor
0.2
528
Normal
0.2
881
Tumor
0.2
126
Normal
0.2
741
Tumor
0.2
387
Tumor
0.2
195
Tumor
0.2
1015
Tumor
0.2
641
Tumor
0.2
937
Tumor
0.2
473
Tumor
0.2
261
Tumor
0.2
464
Normal
0.2
537
Tumor
0.2
223
Tumor
0.2
697
Tumor
0.2
352
Normal
0.2
393
Tumor
0.2
434
Normal
0.2
497
Tumor
0.2
451
Tumor
0.2
112
Tumor
0.2
368
Normal
0.2
647
Tumor
0.2
466
Normal
0.2
354
Normal
0.2
447
Tumor
0.2
344
Normal
0.1
1013
Tumor
0.1
125
Tumor
0.1
272
Normal
0.1
124
Normal
0.1
534
Normal
0.1
396
Normal
0.1
554
Normal
0.1
558
Normal
0.1
663
Tumor
0.1
213
Tumor
0.1
913
Tumor
0.1
446
Normal
0.1
721
Tumor
0.1
873
Tumor
0.1
362
Normal
0.1
921
Tumor
0.1
536
Normal
0.1
685
Tumor
0.1
975
Tumor
0.1
341
Tumor
0.1
574
Normal
0.1
1043
Tumor
0.1
514
Normal
0.1
1028
Normal
0.1
563
Tumor
0.1
186
Normal
0.1
557
Tumor
0.1
363
Tumor
0.1
421
Tumor
0.1
525
Tumor
0.1
262
Normal
0.1
564
Normal
0.1
188
Normal
0.1
918
Normal
0.1
114
Normal
0.1
923
Tumor
0.1
526
Normal
0.1
981
Tumor
0.1
914
Normal
0.1
1041
Tumor
0.1
148
Normal
0.1
111
Normal
0.1
172
Normal
0.1
1026
Normal
0.1
414
Normal
0.1
391
Tumor
0.1
436
Normal
0.1
538
Normal
0.1
951
Tumor
0.1
868
Normal
0.1
661
Tumor
0.1
926
Normal
0.1
572
Normal
0.1
431
Tumor
0.1
355
Tumor
0.1
222
Normal
0.1
132
Normal
0.1
916
Normal
0.1
968
Normal
0.0
311
Tumor
0.0
312
Normal
0.0
422
Normal
0.0
474
Normal
0.0
483
Tumor
0.0
815
Tumor
0.0
568
Normal
0.0
123
Tumor
0.0
1042
Normal
0.0
628
Normal
0.0
728
Normal
0.0
823
Tumor
0.0
742
Normal
0.0
135
Tumor
0.0
477
Tumor
0.0
686
Normal
0.0
737
Tumor
0.0
192
Normal
0.0
444
Normal
0.0
922
Normal
0.0
428
Normal
0.0
142
Normal
0.0
138
Normal
0.0
491
Tumor
0.0
297
Tumor
N/A
498
Normal
0.0
214
Normal
0.0
456
Normal
0.0
386
Normal
0.0
518
Normal
0.0
452
Normal
0.0
478
Normal
0.0
258
Normal
0.0
448
Normal
0.0
455
Tumor
0.0
462
Normal
0.0
977
Tumor
0.0
666
Normal
0.0
723
Tumor
0.0
952
Normal
0.0
1044
Normal
0.0
664
Normal
0.0
627
Tumor
0.0
286
Normal
0.0
141
Tumor
0.0
636
Normal
0.0
212
Normal
0.0
648
Normal
0.0
1045
Tumor
0.0
696
Normal
0.0
943
Tumor
0.0
162
Normal
0.0
285
Tumor
0.0
755
Tumor
0.0
722
Normal
0.0
426
Normal
0.0
342
Normal
-0.1
268
Normal
-0.1
424
Normal
-0.1
432
Normal
-0.1
738
Normal
-0.1
1032
Normal
-0.1
128
Normal
-0.1
232
Normal
-0.1
546
Normal
-0.1
1016
Normal
-0.1
412
Normal
-0.1
956
Normal
-0.1
955
Tumor
-0.1
196
Normal
-0.1
366
Normal
-0.1
416
Normal
-0.1
356
Normal
-0.1
463
Tumor
-0.1
375
Tumor
-0.1
944
Normal
-0.1
461
Tumor
-0.1
865
Tumor
-0.1
744
Normal
-0.1
863
Tumor
-0.1
493
Tumor
-0.1
284
Normal
-0.1
662
Normal
-0.1
231
Tumor
-0.1
524
Normal
-0.1
185
Tumor
-0.1
383
Tumor
-0.1
618
Normal
-0.1
465
Tumor
-0.1
861
Tumor
-0.1
884
Normal
-0.1
778
Normal
-0.1
966
Normal
-0.1
984
Normal
-0.1
756
Normal
-0.1
523
Tumor
-0.1
516
Normal
-0.1
482
Normal
-0.1
278
Normal
-0.1
672
Normal
-0.1
283
Tumor
-0.1
698
Normal
-0.1
392
Normal
-0.1
146
Normal
-0.1
394
Normal
-0.1
384
Normal
-0.1
413
Tumor
-0.1
642
Normal
-0.1
715
Tumor
-0.1
332
Normal
-0.1
924
Normal
-0.2
1022
Normal
-0.2
716
Normal
-0.2
954
Normal
-0.2
376
Normal
-0.2
976
Normal
-0.2
964
Normal
-0.2
494
Normal
-0.2
427
Tumor
-0.2
714
Normal
-0.2
472
Normal
-0.2
917
Tumor
-0.2
814
Normal
-0.2
365
Tumor
-0.2
866
Normal
-0.2
786
Normal
-0.2
978
Normal
-0.2
224
Normal
-0.2
415
Tumor
-0.2
874
Normal
-0.2
958
Normal
-0.2
878
Normal
-0.2
862
Normal
-0.2
328
Normal
-0.2
364
Normal
-0.2
492
Normal
-0.2
488
Normal
-0.2
813
Tumor
-0.2
388
Normal
-0.2
298
Normal
-0.2
852
Normal
-0.2
161
Tumor
-0.2
481
Tumor
-0.2
425
Tumor
-0.3
864
Normal
-0.3
361
Tumor
-0.3
882
Normal
-0.3
858
Normal
-0.3
314
Normal
-0.3
423
Tumor
-0.3
484
Normal
-0.3
938
Normal
-0.3
746
Normal
-0.3
816
Normal
-0.3
616
Normal
-0.3
824
Normal
-0.3
515
Tumor
-0.3
912
Normal
-0.3
857
Tumor
-0.3
228
Normal
-0.3
982
Normal
-0.3
1014
Normal
-0.3
867
Tumor
-0.3
513
Tumor
-0.4
487
Tumor
-0.4
785
Tumor
-0.4
1046
Normal
-0.4
915
Tumor
-0.4
911
Tumor
-0.4
635
Tumor
-0.5
818
Normal
-0.5
615
Tumor
-0.6
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
