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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
h
m
l
n
Glial cells:
Medium
Neuronal cells:
High
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
952.7
nTPM
HPA Brain:
1181.3
nTPM
GTEx:
952.7
nTPM
FANTOM5:
2265.7
Scaled Tags Per Million
Pig:
675.8
nTPM
Mouse:
1090.5
nTPM
Allen mouse:
25.7
Expression energy
HIPPOCAMPUS - Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
Antibody HPA039247
Antibody HPA043684
Antibody HPA063394
Antibody CAB011513
Glial cells
Medium
Not detected
Not detected
Not detected
Neuronal cells
High
High
Medium
Medium
HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
1181.3
Sample id
Sample description
nTPM
Hippocampus nTPM: 697.1
1898
Male, age 80, left hemisphere
1083.0
2621
Female, age 67, right hemisphere
797.9
2148
Female, age 91, left hemisphere
728.5
2529
Female, age 94, left hemisphere
571.2
1855
Male, age 76, left hemisphere
537.5
1911
Female, age 85, right hemisphere
464.6
Dentate gyrus nTPM: 804.4
2530
Female, age 94, left hemisphere
1389.6
1927
Female, age 91, both hemispheres
855.5
2246
Female, age 85, both hemispheres
729.2
2010
Male, age 76, both hemispheres
642.8
2528
Male, age 74, both hemispheres
639.4
2531
Female, age 67, both hemispheres
570.1
Entorhinal gyrus nTPM: 1020.3
2764
Male, age 80, right hemisphere
1252.9
2613
Female, age 94, left hemisphere
1225.8
1938
Female, age 85, left hemisphere
1134.5
2686
Male, age 75, right hemisphere
990.4
1787
Male, age 76, left hemisphere
924.0
2117
Female, age 91, right hemisphere
593.9
Hippocampus, CA1 nTPM: 709.4
2749
Male, age 80, left hemisphere
1091.2
1873
Female, age 85, both hemispheres
825.7
2527
Male, age 74, both hemispheres
751.6
2045
Male, age 76, both hemispheres
466.7
2082
Female, age 91, right hemisphere
411.7
Hippocampus, CA2 nTPM: 754.4
1963
Male, age 80, left hemisphere
1167.0
2437
Female, age 94, left hemisphere
921.8
1892
Male, age 76, both hemispheres
834.7
2249
Male, age 74, both hemispheres
600.8
1940
Female, age 85, left hemisphere
550.5
2113
Female, age 91, right hemisphere
451.9
Hippocampus, CA3 nTPM: 658.4
2861
Female, age 67, both hemispheres
739.0
1891
Female, age 85, both hemispheres
686.6
2436
Male, age 74, both hemispheres
679.9
2137
Male, age 80, left hemisphere
677.4
1867
Male, age 76, both hemispheres
619.2
2620
Female, age 94, left hemisphere
548.0
Parahippocampal cortex nTPM: 963.7
1850
Male, age 80, both hemispheres
1243.2
2532
Female, age 72, left hemisphere
1126.2
1933
Female, age 85, both hemispheres
1053.0
2245
Female, age 91, both hemispheres
958.4
2692
Male, age 74, both hemispheres
952.5
2693
Female, age 94, both hemispheres
935.0
2622
Female, age 67, right hemisphere
933.9
2250
Female, age 67, right hemisphere
891.5
1990
Female, age 91, right hemisphere
885.6
2018
Male, age 76, both hemispheres
658.2
Perirhinal gyrus nTPM: 1181.3
1847
Female, age 91, left hemisphere
1320.8
1841
Female, age 85, right hemisphere
1233.9
1794
Male, age 80, right hemisphere
1213.9
2848
Male, age 76, right hemisphere
1116.4
2521
Female, age 94, right hemisphere
1021.5
Subiculum nTPM: 738.4
1977
Female, age 85, both hemispheres
1047.4
2438
Female, age 94, left hemisphere
814.3
2619
Male, age 74, both hemispheres
791.8
1901
Male, age 80, both hemispheres
761.1
2042
Male, age 76, both hemispheres
551.6
2729
Female, age 91, right hemisphere
464.1
HIPPOCAMPAL FORMATION - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
952.7
GTEx sample id
Sample description
nTPM
Brain - Hippocampus Average nTPM: 952.7
Samples: 197
Max nTPM: 2678.5
Min nTPM: 247.5
Std nTPM: 504.7
Median nTPM: 799.5
GTEX-1HT8W-0011-R1b-SM-CJI3V
30-39 years, male
2678.5
GTEX-13O3O-0011-R1b-SM-5KM2K
60-69 years, female
2587.0
GTEX-RNOR-0011-R1A-SM-CNNP5
50-59 years, female
2215.8
GTEX-1ICLZ-0011-R1b-SM-A9SM3
60-69 years, male
2133.6
GTEX-WHSE-0011-R1A-SM-3P5ZK
20-29 years, male
2097.2
GTEX-145MH-0011-R1b-SM-5PNWY
50-59 years, male
2063.3
GTEX-144GL-0011-R1a-SM-5PNZ5
50-59 years, male
2057.6
GTEX-P44G-0011-R1A-SM-2I3FE
30-39 years, male
2015.7
GTEX-139TT-0011-R1a-SM-5LZVD
60-69 years, male
1991.3
GTEX-1CB4G-0011-R1b-SM-9QEHT
60-69 years, male
1937.8
GTEX-1313W-0011-R1b-SM-5EQ4A
50-59 years, female
1919.3
GTEX-1EX96-0011-R1a-SM-CE6R5
50-59 years, male
1917.1
GTEX-N7MS-0011-R1a-SM-2HMJG
60-69 years, male
1906.4
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y
40-49 years, male
1869.0
GTEX-14LLW-0011-R1a-SM-5ZZVD
70-79 years, female
1864.8
GTEX-14ABY-0011-R1a-SM-6EU2W
50-59 years, male
1808.2
GTEX-16YQH-0011-R1a-SM-7LT8R
30-39 years, male
1770.6
GTEX-1F75A-0011-R1b-SM-CE6RA
50-59 years, male
1765.9
GTEX-WWYW-0011-R1A-SM-3TW8G
50-59 years, female
1759.5
GTEX-13NYB-0011-R1b-SM-5KM4F
40-49 years, male
1750.0
GTEX-1AX9I-0011-R1b-SM-7RHG2
60-69 years, male
1749.9
GTEX-13FLW-0011-R1b-SM-5LZX2
50-59 years, male
1739.9
GTEX-WL46-0011-R1A-SM-3LK6M
50-59 years, male
1712.5
GTEX-1LG7Y-0011-R1a-SM-EYYWV
50-59 years, male
1710.5
GTEX-1EMGI-0011-R1b-SM-9OSWZ
60-69 years, male
1709.7
GTEX-12WSF-0011-R1a-SM-5DUVI
70-79 years, male
1688.3
GTEX-YFC4-0011-R1a-SM-4V6EH
40-49 years, female
1634.5
GTEX-13FXS-0011-R1a-SM-5K7U6
50-59 years, male
1619.7
GTEX-1GTWX-0011-R1a-SM-CE6RL
60-69 years, male
1599.7
GTEX-1IOXB-0011-R1a-SM-D4P27
50-59 years, male
1550.7
GTEX-T6MN-0011-R1A-SM-32QOY
50-59 years, male
1539.9
GTEX-1IDJH-0011-R1b-SM-ARU6U
70-79 years, male
1532.5
GTEX-N7MT-0011-R1a-SM-CNPO1
60-69 years, female
1486.4
GTEX-13OW5-0011-R1b-SM-5L3GE
60-69 years, male
1463.4
GTEX-13112-0011-R1b-SM-5HL7K
50-59 years, male
1454.8
GTEX-1B8SF-0011-R1b-SM-7P8Q8
60-69 years, male
1436.8
GTEX-NL3H-0011-R1a-SM-48TDJ
60-69 years, male
1435.8
GTEX-12WSE-0011-R1b-SM-5GU4V
20-29 years, male
1424.0
GTEX-1EWIQ-0011-R1a-SM-9OSX7
70-79 years, female
1405.7
GTEX-ZAB4-0011-R1a-SM-4RGNO
40-49 years, male
1404.9
GTEX-12WSH-0011-R1a-SM-5GU5V
50-59 years, male
1401.3
GTEX-14JIY-0011-R1a-SM-68713
60-69 years, male
1387.1
GTEX-X585-0011-R1B-SM-46MVE
50-59 years, male
1386.3
GTEX-Q2AG-0011-R1A-SM-2HMJI
40-49 years, female
1360.4
GTEX-ZDXO-0011-R1a-SM-4WKF4
60-69 years, male
1355.2
GTEX-13JUV-0011-R1a-SM-5LZY4
40-49 years, female
1348.2
GTEX-14E6D-0011-R1b-SM-5YYAW
50-59 years, male
1303.2
GTEX-12WSM-0011-R1a-SM-5LZW6
60-69 years, male
1279.6
GTEX-1H3NZ-0011-R1a-SM-CKZP5
60-69 years, male
1260.7
GTEX-1F6I4-0011-R1a-SM-9OSWU
60-69 years, male
1249.7
GTEX-13O3Q-0011-R1b-SM-5KM3L
50-59 years, male
1242.4
GTEX-14C5O-0011-R1b-SM-6AJBW
60-69 years, male
1236.9
GTEX-131XH-0011-R1a-SM-5DUWA
50-59 years, male
1225.5
GTEX-13OW6-0011-R1a-SM-5L3HQ
50-59 years, male
1188.8
GTEX-R55E-0011-R1A-SM-2TC6N
20-29 years, male
1172.0
GTEX-17HG3-0011-R1a-SM-7LG6H
30-39 years, female
1161.7
GTEX-PVOW-0011-R1A-SM-32PL6
40-49 years, male
1142.0
GTEX-1B933-0011-R1b-SM-9QEGW
50-59 years, female
1136.1
GTEX-13X6I-0011-R1b-SM-5PNZC
60-69 years, male
1136.0
GTEX-QDT8-0011-R1A-SM-32PKS
30-39 years, female
1107.4
GTEX-11GS4-0011-R1a-SM-DO129
60-69 years, male
1089.6
GTEX-1H3O1-0011-R1b-SM-CL554
60-69 years, male
1089.6
GTEX-14PN4-0011-R1b-SM-69LP8
50-59 years, male
1064.7
GTEX-13NYS-0011-R1b-SM-5MR55
60-69 years, male
1061.9
GTEX-1GMR8-0011-R1b-SM-CJI2O
50-59 years, female
1050.3
GTEX-1I1HK-0011-R1b-SM-CM2T7
60-69 years, male
1045.9
GTEX-17HHY-0011-R1a-SM-7189V
50-59 years, male
1040.8
GTEX-11DXW-0011-R1a-SM-DNZZD
40-49 years, male
1037.0
GTEX-ZE7O-0011-R1a-SM-57WDM
50-59 years, female
1032.9
GTEX-12WSD-0011-R1b-SM-5LZVY
60-69 years, female
1009.1
GTEX-1GF9W-0011-R1a-SM-9QEIQ
60-69 years, male
982.4
GTEX-1EKGG-0011-R1b-SM-9QEI1
60-69 years, male
978.0
GTEX-ZF28-0011-R1a-SM-4WWD1
60-69 years, male
974.8
GTEX-14ASI-0011-R1b-SM-5S2TY
60-69 years, male
974.0
GTEX-1IY9M-0011-R1a-SM-EXURZ
60-69 years, male
939.9
GTEX-1HSKV-0011-R1b-SM-CMKH7
60-69 years, male
938.1
GTEX-13G51-0011-R1a-SM-5LZYR
60-69 years, male
932.3
GTEX-1A32A-0011-R1a-SM-7P8SQ
50-59 years, female
931.0
GTEX-TSE9-0011-R1A-SM-3DB7E
60-69 years, female
916.3
GTEX-1F48J-0011-R1a-SM-9QEIC
50-59 years, female
914.7
GTEX-WZTO-0011-R1B-SM-3NMAR
40-49 years, male
904.9
GTEX-1H1ZS-0011-R1b-SM-A9G1E
70-79 years, male
891.7
GTEX-PWO3-0011-R1A-SM-2I5EW
60-69 years, female
884.9
GTEX-13N1W-0011-R1b-SM-5MR4T
70-79 years, male
879.2
GTEX-T5JC-0011-R1A-SM-32PM6
20-29 years, male
867.8
GTEX-16Z82-0011-R1b-SM-7EPHZ
60-69 years, male
861.9
GTEX-1A8G6-0011-R1a-SM-7P8PC
60-69 years, male
845.3
GTEX-1399T-0011-R1b-SM-5DUWN
60-69 years, male
841.5
GTEX-1I1GS-0011-R1a-SM-CJI43
60-69 years, male
840.9
GTEX-11ZTS-0011-R1a-SM-5BC71
60-69 years, female
840.8
GTEX-1H4P4-0011-R1b-SM-CL54V
50-59 years, male
839.6
GTEX-13S7M-0011-R1b-SM-5PNZE
60-69 years, female
838.2
GTEX-1GN73-0011-R1a-SM-CKZNT
60-69 years, male
837.9
GTEX-17JCI-0011-R1b-SM-718A3
60-69 years, female
837.0
GTEX-11TUW-0011-R1a-SM-DO92S
60-69 years, male
835.7
GTEX-1GN1U-0011-R1a-SM-CJI25
50-59 years, female
826.3
GTEX-13RTL-0011-R1a-SM-5PNZ8
40-49 years, male
808.4
GTEX-1E1VI-0011-R1a-SM-ARZMM
50-59 years, male
802.6
GTEX-WVLH-0011-R1A-SM-4MVOK
50-59 years, male
799.5
GTEX-1H1DG-0011-R1b-SM-CKZP1
70-79 years, male
798.9
GTEX-1B8L1-0011-R1a-SM-7P8SS
60-69 years, male
780.0
GTEX-1CB4J-0011-R1a-SM-9WG64
60-69 years, male
771.5
GTEX-QMR6-0011-R1A-SM-32PKW
50-59 years, male
769.1
GTEX-1A3MX-0011-R1b-SM-7P8PH
60-69 years, male
764.9
GTEX-17EVP-0011-R1a-SM-7DHLA
40-49 years, male
764.1
GTEX-13NZ8-0011-R1b-SM-5KM3V
60-69 years, female
757.4
GTEX-1J1OQ-0011-R1a-SM-A9G1Z
40-49 years, female
756.1
GTEX-12ZZX-0011-R1a-SM-5EQ6B
40-49 years, female
755.9
GTEX-15ER7-0011-R1b-SM-7KUE1
20-29 years, female
754.2
GTEX-NPJ7-0011-R1a-SM-3GACT
60-69 years, female
751.1
GTEX-1HGF4-0011-R1a-SM-CJI3S
60-69 years, male
743.2
GTEX-X4XX-0011-R1B-SM-3P622
60-69 years, male
742.9
GTEX-1LB8K-0011-R1b-SM-EZ6MV
50-59 years, male
741.7
GTEX-1HBPI-0011-R1b-SM-A9SKF
50-59 years, male
730.7
GTEX-1EH9U-0011-R1b-SM-CJI2B
60-69 years, male
726.4
GTEX-S7SE-0011-R1A-SM-2XCDE
50-59 years, male
723.7
GTEX-1C6VR-0011-R1a-SM-7MXUE
60-69 years, male
713.3
GTEX-1GN2E-0011-R1b-SM-CE6RJ
60-69 years, male
684.5
GTEX-145LS-0011-R1b-SM-5PNUP
60-69 years, female
676.1
GTEX-14PQA-0011-R1b-SM-6EU1G
50-59 years, female
675.8
GTEX-13OVJ-0011-R1b-SM-5L3I6
50-59 years, female
672.5
GTEX-13FTY-0011-R1a-SM-5LZXE
40-49 years, female
666.4
GTEX-14LZ3-0011-R1a-SM-69LP5
60-69 years, female
665.7
GTEX-183WM-0011-R1a-SM-718A8
70-79 years, female
662.9
GTEX-18A6Q-0011-R1b-SM-731DI
60-69 years, male
661.2
GTEX-ZUA1-0011-R1a-SM-4YCE2
40-49 years, male
660.3
GTEX-17F97-0011-R1b-SM-7IGM9
50-59 years, male
656.9
GTEX-13PDP-0011-R1a-SM-5PNX5
60-69 years, male
654.4
GTEX-1F6IF-0011-R1b-SM-9WG78
60-69 years, male
649.5
GTEX-17HII-0011-R1b-SM-7MGVW
50-59 years, male
648.3
GTEX-1E2YA-0011-R1b-SM-CJI29
50-59 years, male
647.3
GTEX-P44H-0011-R1A-SM-3NM8J
40-49 years, male
643.3
GTEX-1C64N-0011-R1b-SM-7P8Q7
50-59 years, male
641.7
GTEX-11GSP-0011-R1a-SM-9QEJ3
60-69 years, female
640.4
GTEX-13FHO-0011-R1b-SM-5KLZG
60-69 years, male
635.5
GTEX-145LU-0011-R1a-SM-5Q5CE
50-59 years, male
621.2
GTEX-15DCD-0011-R1b-SM-6LPIJ
70-79 years, female
616.6
GTEX-11EI6-0011-R1a-SM-DO93L
60-69 years, male
607.1
GTEX-1B996-0011-R1b-SM-7P8PO
60-69 years, male
602.3
GTEX-13CF2-0011-R1a-SM-5LZY1
60-69 years, male
595.8
GTEX-X4EP-0011-R1A-SM-3P624
60-69 years, female
591.8
GTEX-16XZZ-0011-R1a-SM-7LTAH
60-69 years, male
591.3
GTEX-1IKK5-0011-R1b-SM-CE6SQ
60-69 years, male
585.5
GTEX-14BIM-0011-R1a-SM-69LQI
60-69 years, female
580.3
GTEX-13QIC-0011-R1a-SM-5O9CJ
60-69 years, female
578.8
GTEX-13OVL-0011-R1a-SM-5L3H5
50-59 years, male
574.3
GTEX-13JVG-0011-R1a-SM-5KM32
60-69 years, male
564.9
GTEX-1H3VE-0011-R1a-SM-A9G1K
40-49 years, male
562.6
GTEX-13RTJ-0011-R1a-SM-5O9D9
60-69 years, male
560.5
GTEX-13N2G-0011-R1b-SM-5MR3G
60-69 years, male
560.0
GTEX-1I1GQ-0011-R1a-SM-CY8GG
50-59 years, male
557.0
GTEX-16NPV-0011-R1b-SM-7MGVZ
50-59 years, female
550.4
GTEX-14PJM-0011-R1a-SM-CNPO3
50-59 years, female
548.8
GTEX-13OW7-0011-R1b-SM-5L3HF
50-59 years, male
545.5
GTEX-1HR98-0011-R1a-SM-ARZLQ
60-69 years, male
529.1
GTEX-1H1CY-0011-R1a-SM-CKZOZ
60-69 years, female
528.6
GTEX-YJ89-0011-R1a-SM-4RGLS
60-69 years, male
528.2
GTEX-1H23P-0011-R1a-SM-ACKVC
60-69 years, male
522.9
GTEX-1C6VQ-0011-R1a-SM-7P8Q2
50-59 years, male
517.7
GTEX-QVJO-0011-R1A-SM-2S1QI
60-69 years, female
516.5
GTEX-16GPK-0011-R1b-SM-7EWDH
60-69 years, male
515.4
GTEX-11UD1-0011-R1b-SM-5BC7D
40-49 years, female
511.3
GTEX-13OW8-0011-R1a-SM-5L3HI
60-69 years, male
508.9
GTEX-11WQC-0011-R1b-SM-DO932
60-69 years, male
500.2
GTEX-1HSMO-0011-R1a-SM-CM2SV
60-69 years, male
498.6
GTEX-131YS-0011-R1a-SM-5DUXC
60-69 years, female
498.4
GTEX-11ONC-0011-R1a-SM-57WD4
60-69 years, male
496.3
GTEX-15CHQ-0011-R1a-SM-COH27
60-69 years, male
490.0
GTEX-Y8DK-0011-R1A-SM-4RGLO
60-69 years, male
483.4
GTEX-144GO-0011-R1a-SM-5PNWO
60-69 years, male
483.2
GTEX-13FHP-0011-R1b-SM-5K7XL
50-59 years, male
473.6
GTEX-139T8-0011-R1a-SM-5HL75
60-69 years, male
470.9
GTEX-1BAJH-0011-R1a-SM-7P8SV
70-79 years, male
467.0
GTEX-ZVZQ-0011-R1a-SM-57WBU
60-69 years, female
463.3
GTEX-UTHO-0011-R1A-SM-3GIJO
60-69 years, male
463.2
GTEX-11GSO-0011-R1b-SM-57WD3
60-69 years, male
451.7
GTEX-13QJC-0011-R1b-SM-5S2UU
60-69 years, female
450.3
GTEX-QVUS-0011-R1A-SM-3GAD2
60-69 years, female
442.4
GTEX-13NZA-0011-R1b-SM-5LUAF
60-69 years, male
439.1
GTEX-NPJ8-0011-R1a-SM-33HCB
40-49 years, male
429.2
GTEX-14E7W-0011-R1b-SM-5YYAT
70-79 years, male
425.6
GTEX-1GZHY-0011-R1a-SM-CE6RR
50-59 years, female
418.2
GTEX-XMD1-0011-R1A-SM-4AT4C
60-69 years, male
415.0
GTEX-132Q8-0011-R1a-SM-5EGLK
60-69 years, male
409.0
GTEX-1GF9V-0011-R1a-SM-CKZNQ
60-69 years, male
401.7
GTEX-1CAV2-0011-R1a-SM-ARZML
40-49 years, female
382.9
GTEX-15UF6-0011-R1a-SM-9QEGH
70-79 years, female
381.6
GTEX-1J8Q2-0011-R1a-SM-D4P2D
60-69 years, male
352.2
GTEX-1212Z-0011-R1b-SM-5BC72
60-69 years, male
344.5
GTEX-1F75W-0011-R1a-SM-ARU81
60-69 years, male
342.1
GTEX-11ZVC-0011-R1b-SM-5BC6M
50-59 years, female
336.1
GTEX-17EVQ-0011-R1a-SM-7189S
70-79 years, male
330.9
GTEX-OHPN-0011-R1A-SM-2I5GB
60-69 years, female
327.0
GTEX-13SLW-0011-R1a-SM-5S2W7
70-79 years, male
322.2
GTEX-1I1GV-0011-R1a-SM-CL559
60-69 years, male
309.9
GTEX-17MF6-0011-R1a-SM-72D6O
40-49 years, male
307.5
GTEX-14PJO-0011-R1b-SM-6AJAK
60-69 years, male
247.5
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
1090.5
Mouse sample
Sample description
nTPM
Entorhinal cortex nTPM: 1090.6
Samples: 4
Max nTPM: 1237.4
Min nTPM: 1013.8
Sample A
Male
1013.8
Sample B
Male
1044.7
Sample C
Female
1066.3
Sample D
Female
1237.4
Hippocampal formation nTPM: 1005.5
Samples: 4
Max nTPM: 1065.4
Min nTPM: 938.1
Sample A
Male
1065.4
Sample B
Male
938.1
Sample C
Female
993.6
Sample D
Female
1025.0
HIPPOCAMPAL FORMATION - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.