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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
59.4
nTPM
HPA Brain:
148.5
nTPM
GTEx:
59.4
nTPM
FANTOM5:
11.4
Scaled Tags Per Million
Pig:
60.1
nTPM
Mouse:
44.8
nTPM
Allen mouse:
8.6
Expression energy
MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
148.5
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 132.6
2586
Male, age 75, left hemisphere
357.0
2828
Female, age 72, unknown
135.6
2219
Male, age 76, both hemispheres
123.3
1830
Male, age 51, unknown
120.0
1833
Male, age 53, unknown
119.0
1827
Male, age 72, unknown
105.2
1870
Female, age 42, unknown
97.1
2666
Male, age 74, left hemisphere
93.0
2019
Male, age 18, unknown
88.1
2411
Female, age 72, unknown
87.4
Dorsal raphe nucleus nTPM: 125.0
2047
Male, age 72, unknown
164.5
1828
Male, age 53, unknown
150.9
2016
Female, age 72, unknown
119.2
2298
Female, age 72, unknown
100.3
2750
Male, age 76, both hemispheres
90.4
Inferior colliculus nTPM: 126.1
2849
Male, age 72, unknown
149.2
1848
Female, age 42, unknown
142.3
1890
Male, age 53, unknown
116.8
2097
Female, age 72, unknown
95.9
Median raphe nucleus nTPM: 98.4
2220
Male, age 76, midline
98.4
Periaquaductal grey, anterior nTPM: 103.6
2502
Female, age 75, unknown
114.9
1947
Male, age 18, unknown
108.0
1795
Male, age 51, unknown
87.9
Periaquaductal grey, dorsal nTPM: 112.9
1840
Male, age 53, unknown
122.8
1831
Male, age 72, unknown
111.9
2850
Male, age 76, both hemispheres
111.4
2464
Female, age 72, unknown
105.4
Periaquaductal grey, lateral nTPM: 99.4
2140
Male, age 76, both hemispheres
119.0
2053
Male, age 18, unknown
106.2
2272
Male, age 74, both hemispheres
73.2
Pretectal area nTPM: 104.1
1817
Female, age 42, unknown
132.4
2825
Male, age 18, unknown
131.8
2667
Female, age 75, unknown
131.4
2407
Male, age 75, both hemispheres
119.5
1815
Male, age 53, unknown
105.6
1944
Female, age 72, unknown
94.4
2316
Male, age 76, right hemisphere
93.5
2007
Male, age 72, unknown
90.3
2224
Female, age 72, unknown
90.2
1816
Male, age 51, unknown
86.5
2273
Male, age 74, both hemispheres
69.4
Red nucleus nTPM: 148.5
2588
Male, age 74, left hemisphere
229.1
1954
Female, age 42, unknown
206.1
1821
Female, age 72, unknown
184.1
1865
Male, age 51, unknown
164.9
2227
Male, age 72, unknown
158.7
2769
Male, age 72, unknown
156.3
2503
Female, age 72, unknown
146.3
1904
Male, age 53, unknown
145.9
2823
Male, age 76, right hemisphere
120.8
2584
Male, age 75, left hemisphere
110.0
2785
Male, age 18, unknown
88.4
2725
Female, age 75, unknown
72.0
Substantia nigra nTPM: 110.7
2699
Male, age 18, unknown
179.7
1916
Female, age 42, unknown
145.9
2583
Male, age 75, right hemisphere
121.6
1851
Male, age 51, unknown
118.5
2665
Male, age 74, both hemispheres
116.7
1889
Female, age 72, unknown
114.7
2241
Male, age 72, unknown
86.0
1941
Male, age 53, unknown
84.0
2590
Female, age 75, unknown
73.6
2409
Female, age 72, unknown
66.8
Superior colliculus nTPM: 114.1
2668
Female, age 75, unknown
208.9
2664
Male, age 75, both hemispheres
186.8
1796
Male, age 53, unknown
118.0
1839
Male, age 51, unknown
113.4
1895
Male, age 76, right hemisphere
112.1
2087
Female, age 72, unknown
92.7
2261
Male, age 18, unknown
92.7
1995
Male, age 72, unknown
84.8
2587
Male, age 74, left hemisphere
70.3
1913
Female, age 42, unknown
61.5
Ventral tegmental area nTPM: 96.2
2410
Female, age 72, unknown
111.5
2218
Male, age 76, both hemispheres
101.8
1915
Female, age 42, unknown
97.4
1942
Male, age 51, unknown
95.4
2223
Female, age 72, unknown
89.9
2021
Male, age 53, unknown
81.2
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
59.4
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 59.4
Samples: 139
Max nTPM: 267.2
Min nTPM: 9.2
Std nTPM: 41.2
Median nTPM: 49.2
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
267.2
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
244.9
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
205.5
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
205.4
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
156.5
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
144.2
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
121.2
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
115.4
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
113.7
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
112.7
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
111.9
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
111.5
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
106.3
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
103.8
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
100.2
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
100.2
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
98.6
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
97.4
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
90.2
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
89.2
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
86.8
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
86.8
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
86.4
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
85.7
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
83.6
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
82.4
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
81.3
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
81.1
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
79.5
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
78.4
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
77.9
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
76.7
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
76.6
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
75.3
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
74.0
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
72.4
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
72.2
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
69.8
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
68.9
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
68.8
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
67.2
GTEX-OXRO-0011-R2A-SM-3NB1W
60-69 years, female
66.4
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
66.3
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
66.3
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
65.0
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
64.6
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
64.5
GTEX-NPJ8-0011-R2a-SM-2TC6M
40-49 years, male
64.5
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
63.9
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
63.2
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
61.3
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
60.5
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
60.3
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
59.1
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
59.0
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
58.7
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
57.8
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
57.5
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
56.7
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
56.6
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
56.2
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
55.9
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
55.7
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
55.3
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
54.5
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
53.6
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
52.9
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
51.9
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
49.9
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
49.2
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
49.1
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
48.8
GTEX-P44G-0011-R2A-SM-2XCD2
30-39 years, male
48.2
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
48.0
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
47.8
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
45.8
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
45.7
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
45.3
GTEX-PWO3-0011-R2A-SM-2S1OX
60-69 years, female
45.0
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
44.5
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
44.1
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
43.8
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
43.6
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
43.5
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
43.4
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
43.3
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
43.2
GTEX-NL4W-0011-R2a-SM-2I5GV
50-59 years, male
43.1
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
42.7
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
42.5
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
42.4
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
40.6
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
40.3
GTEX-18464-0011-R2a-SM-731AL
50-59 years, male
39.2
GTEX-T5JC-0011-R2A-SM-32PLZ
20-29 years, male
39.2
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
38.9
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
38.8
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
38.7
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
38.6
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
37.1
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
36.9
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
36.9
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
36.5
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
36.0
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
35.7
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
35.6
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
32.9
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
32.3
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
31.9
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
31.6
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
31.5
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
30.7
GTEX-1IKOH-0011-R2a-SM-CMKHO
60-69 years, female
30.5
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
29.8
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
28.7
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
26.5
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
25.1
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
24.6
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
23.9
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
22.4
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
22.4
GTEX-N7MS-0011-R2a-SM-2HML6
60-69 years, male
22.3
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
21.9
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
18.9
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
18.4
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
18.3
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
17.7
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
17.5
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
16.8
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
16.4
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
16.0
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
15.6
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
15.4
GTEX-N7MT-0011-R2a-SM-2I3GI
60-69 years, female
13.8
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
13.4
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
12.3
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
12.3
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
12.2
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
9.2
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MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
44.8
Mouse sample
Sample description
nTPM
Midbrain nTPM: 44.8
Samples: 4
Max nTPM: 49.8
Min nTPM: 40.9
Sample A
Male
49.8
Sample B
Male
42.3
Sample C
Female
40.9
Sample D
Female
46.1
MIDBRAIN - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.