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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
h
m
l
n
Glial cells:
Not detected
Neuronal cells:
Not detected
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
185.4
nTPM
HPA Brain:
116.6
nTPM
GTEx:
185.4
nTPM
FANTOM5:
285.9
Scaled Tags Per Million
Pig:
113.1
nTPM
Mouse:
255.9
nTPM
Allen mouse:
12.1
Expression energy
HIPPOCAMPUS - Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
Antibody HPA050918
Antibody HPA054667
Antibody CAB002665
Glial cells
Not detected
Not detected
Not detected
Neuronal cells
Not detected
Not detected
Not detected
HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
116.6
Sample id
Sample description
nTPM
Hippocampus nTPM: 107.3
1898
Male, age 80, left hemisphere
130.0
2621
Female, age 67, right hemisphere
108.6
1855
Male, age 76, left hemisphere
105.5
2148
Female, age 91, left hemisphere
105.4
2529
Female, age 94, left hemisphere
100.4
1911
Female, age 85, right hemisphere
93.8
Dentate gyrus nTPM: 107.6
2530
Female, age 94, left hemisphere
135.6
2010
Male, age 76, both hemispheres
124.5
1927
Female, age 91, both hemispheres
115.2
2246
Female, age 85, both hemispheres
97.4
2531
Female, age 67, both hemispheres
86.8
2528
Male, age 74, both hemispheres
86.3
Entorhinal gyrus nTPM: 104.1
2764
Male, age 80, right hemisphere
125.9
2117
Female, age 91, right hemisphere
111.4
1938
Female, age 85, left hemisphere
103.9
1787
Male, age 76, left hemisphere
103.7
2613
Female, age 94, left hemisphere
92.6
2686
Male, age 75, right hemisphere
87.4
Hippocampus, CA1 nTPM: 116.6
2749
Male, age 80, left hemisphere
185.0
2527
Male, age 74, both hemispheres
106.0
1873
Female, age 85, both hemispheres
101.3
2045
Male, age 76, both hemispheres
98.1
2082
Female, age 91, right hemisphere
92.8
Hippocampus, CA2 nTPM: 112.4
1963
Male, age 80, left hemisphere
142.0
1892
Male, age 76, both hemispheres
130.9
2249
Male, age 74, both hemispheres
109.2
1940
Female, age 85, left hemisphere
101.3
2437
Female, age 94, left hemisphere
96.5
2113
Female, age 91, right hemisphere
94.8
Hippocampus, CA3 nTPM: 104.0
2137
Male, age 80, left hemisphere
132.7
2436
Male, age 74, both hemispheres
119.8
1867
Male, age 76, both hemispheres
118.2
1891
Female, age 85, both hemispheres
87.9
2620
Female, age 94, left hemisphere
84.8
2861
Female, age 67, both hemispheres
80.7
Parahippocampal cortex nTPM: 103.2
2245
Female, age 91, both hemispheres
124.1
2532
Female, age 72, left hemisphere
122.6
1850
Male, age 80, both hemispheres
117.5
1933
Female, age 85, both hemispheres
111.5
1990
Female, age 91, right hemisphere
103.1
2018
Male, age 76, both hemispheres
102.7
2250
Female, age 67, right hemisphere
100.5
2693
Female, age 94, both hemispheres
88.5
2692
Male, age 74, both hemispheres
83.1
2622
Female, age 67, right hemisphere
78.2
Perirhinal gyrus nTPM: 116.4
1847
Female, age 91, left hemisphere
129.6
1794
Male, age 80, right hemisphere
124.6
2521
Female, age 94, right hemisphere
118.4
1841
Female, age 85, right hemisphere
112.3
2848
Male, age 76, right hemisphere
97.3
Subiculum nTPM: 99.7
1977
Female, age 85, both hemispheres
112.9
1901
Male, age 80, both hemispheres
111.9
2042
Male, age 76, both hemispheres
99.9
2438
Female, age 94, left hemisphere
95.9
2619
Male, age 74, both hemispheres
93.4
2729
Female, age 91, right hemisphere
84.2
HIPPOCAMPAL FORMATION - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
185.4
GTEx sample id
Sample description
nTPM
Brain - Hippocampus Average nTPM: 185.4
Samples: 197
Max nTPM: 338.2
Min nTPM: 100.9
Std nTPM: 38.1
Median nTPM: 182.6
GTEX-1IOXB-0011-R1a-SM-D4P27
50-59 years, male
338.2
GTEX-14LLW-0011-R1a-SM-5ZZVD
70-79 years, female
325.4
GTEX-1F75A-0011-R1b-SM-CE6RA
50-59 years, male
286.9
GTEX-144GL-0011-R1a-SM-5PNZ5
50-59 years, male
286.1
GTEX-1EX96-0011-R1a-SM-CE6R5
50-59 years, male
265.3
GTEX-12WSH-0011-R1a-SM-5GU5V
50-59 years, male
259.2
GTEX-13O3O-0011-R1b-SM-5KM2K
60-69 years, female
258.9
GTEX-1AX9I-0011-R1b-SM-7RHG2
60-69 years, male
254.6
GTEX-139TT-0011-R1a-SM-5LZVD
60-69 years, male
253.6
GTEX-13O3Q-0011-R1b-SM-5KM3L
50-59 years, male
252.9
GTEX-1CB4J-0011-R1a-SM-9WG64
60-69 years, male
252.2
GTEX-1CB4G-0011-R1b-SM-9QEHT
60-69 years, male
250.9
GTEX-1H4P4-0011-R1b-SM-CL54V
50-59 years, male
250.9
GTEX-13FXS-0011-R1a-SM-5K7U6
50-59 years, male
249.4
GTEX-17HHY-0011-R1a-SM-7189V
50-59 years, male
247.8
GTEX-13NYB-0011-R1b-SM-5KM4F
40-49 years, male
243.5
GTEX-1399T-0011-R1b-SM-5DUWN
60-69 years, male
243.0
GTEX-1HSMO-0011-R1a-SM-CM2SV
60-69 years, male
236.2
GTEX-1ICLZ-0011-R1b-SM-A9SM3
60-69 years, male
233.5
GTEX-14JIY-0011-R1a-SM-68713
60-69 years, male
232.2
GTEX-N7MS-0011-R1a-SM-2HMJG
60-69 years, male
232.2
GTEX-145LU-0011-R1a-SM-5Q5CE
50-59 years, male
231.9
GTEX-1HT8W-0011-R1b-SM-CJI3V
30-39 years, male
231.6
GTEX-17HG3-0011-R1a-SM-7LG6H
30-39 years, female
230.4
GTEX-1C6VQ-0011-R1a-SM-7P8Q2
50-59 years, male
229.6
GTEX-1GTWX-0011-R1a-SM-CE6RL
60-69 years, male
229.4
GTEX-TSE9-0011-R1A-SM-3DB7E
60-69 years, female
228.5
GTEX-RNOR-0011-R1A-SM-CNNP5
50-59 years, female
228.2
GTEX-X585-0011-R1B-SM-46MVE
50-59 years, male
226.1
GTEX-NL3H-0011-R1a-SM-48TDJ
60-69 years, male
225.7
GTEX-1F6I4-0011-R1a-SM-9OSWU
60-69 years, male
222.7
GTEX-1HSKV-0011-R1b-SM-CMKH7
60-69 years, male
222.6
GTEX-1B8SF-0011-R1b-SM-7P8Q8
60-69 years, male
219.1
GTEX-1H3O1-0011-R1b-SM-CL554
60-69 years, male
218.1
GTEX-12WSD-0011-R1b-SM-5LZVY
60-69 years, female
216.8
GTEX-15ER7-0011-R1b-SM-7KUE1
20-29 years, female
216.4
GTEX-13FLW-0011-R1b-SM-5LZX2
50-59 years, male
215.9
GTEX-13112-0011-R1b-SM-5HL7K
50-59 years, male
215.7
GTEX-YFC4-0011-R1a-SM-4V6EH
40-49 years, female
214.1
GTEX-1A8G6-0011-R1a-SM-7P8PC
60-69 years, male
213.1
GTEX-1F48J-0011-R1a-SM-9QEIC
50-59 years, female
212.4
GTEX-12WSM-0011-R1a-SM-5LZW6
60-69 years, male
212.3
GTEX-11GS4-0011-R1a-SM-DO129
60-69 years, male
212.2
GTEX-11DXW-0011-R1a-SM-DNZZD
40-49 years, male
211.5
GTEX-14PN4-0011-R1b-SM-69LP8
50-59 years, male
209.8
GTEX-1I1GS-0011-R1a-SM-CJI43
60-69 years, male
209.8
GTEX-1B933-0011-R1b-SM-9QEGW
50-59 years, female
208.4
GTEX-WL46-0011-R1A-SM-3LK6M
50-59 years, male
207.5
GTEX-13OW5-0011-R1b-SM-5L3GE
60-69 years, male
207.1
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y
40-49 years, male
205.4
GTEX-13QJC-0011-R1b-SM-5S2UU
60-69 years, female
205.0
GTEX-12WSE-0011-R1b-SM-5GU4V
20-29 years, male
204.6
GTEX-145MH-0011-R1b-SM-5PNWY
50-59 years, male
202.3
GTEX-1313W-0011-R1b-SM-5EQ4A
50-59 years, female
201.9
GTEX-Y8DK-0011-R1A-SM-4RGLO
60-69 years, male
201.6
GTEX-13JUV-0011-R1a-SM-5LZY4
40-49 years, female
201.3
GTEX-14E6D-0011-R1b-SM-5YYAW
50-59 years, male
201.2
GTEX-1A3MX-0011-R1b-SM-7P8PH
60-69 years, male
200.4
GTEX-12ZZX-0011-R1a-SM-5EQ6B
40-49 years, female
198.7
GTEX-1GMR8-0011-R1b-SM-CJI2O
50-59 years, female
197.9
GTEX-1IDJH-0011-R1b-SM-ARU6U
70-79 years, male
197.3
GTEX-1C6VR-0011-R1a-SM-7MXUE
60-69 years, male
197.1
GTEX-131YS-0011-R1a-SM-5DUXC
60-69 years, female
196.6
GTEX-11ZTS-0011-R1a-SM-5BC71
60-69 years, female
195.4
GTEX-WHSE-0011-R1A-SM-3P5ZK
20-29 years, male
195.2
GTEX-1GN73-0011-R1a-SM-CKZNT
60-69 years, male
194.6
GTEX-1E1VI-0011-R1a-SM-ARZMM
50-59 years, male
194.4
GTEX-1H1CY-0011-R1a-SM-CKZOZ
60-69 years, female
193.5
GTEX-WZTO-0011-R1B-SM-3NMAR
40-49 years, male
193.3
GTEX-13NZ8-0011-R1b-SM-5KM3V
60-69 years, female
192.6
GTEX-1EMGI-0011-R1b-SM-9OSWZ
60-69 years, male
192.4
GTEX-1B996-0011-R1b-SM-7P8PO
60-69 years, male
191.7
GTEX-12WSF-0011-R1a-SM-5DUVI
70-79 years, male
191.3
GTEX-1GF9W-0011-R1a-SM-9QEIQ
60-69 years, male
191.2
GTEX-13OVL-0011-R1a-SM-5L3H5
50-59 years, male
190.6
GTEX-11TUW-0011-R1a-SM-DO92S
60-69 years, male
190.6
GTEX-1GN2E-0011-R1b-SM-CE6RJ
60-69 years, male
190.0
GTEX-Q2AG-0011-R1A-SM-2HMJI
40-49 years, female
189.7
GTEX-1EWIQ-0011-R1a-SM-9OSX7
70-79 years, female
189.3
GTEX-1IY9M-0011-R1a-SM-EXURZ
60-69 years, male
189.2
GTEX-13N2G-0011-R1b-SM-5MR3G
60-69 years, male
188.9
GTEX-14PJM-0011-R1a-SM-CNPO3
50-59 years, female
188.6
GTEX-17HII-0011-R1b-SM-7MGVW
50-59 years, male
188.3
GTEX-N7MT-0011-R1a-SM-CNPO1
60-69 years, female
187.7
GTEX-131XH-0011-R1a-SM-5DUWA
50-59 years, male
187.1
GTEX-1LG7Y-0011-R1a-SM-EYYWV
50-59 years, male
187.1
GTEX-13N1W-0011-R1b-SM-5MR4T
70-79 years, male
186.9
GTEX-15DCD-0011-R1b-SM-6LPIJ
70-79 years, female
186.6
GTEX-1IKK5-0011-R1b-SM-CE6SQ
60-69 years, male
186.2
GTEX-16YQH-0011-R1a-SM-7LT8R
30-39 years, male
185.7
GTEX-15CHQ-0011-R1a-SM-COH27
60-69 years, male
185.7
GTEX-16NPV-0011-R1b-SM-7MGVZ
50-59 years, female
185.7
GTEX-18A6Q-0011-R1b-SM-731DI
60-69 years, male
185.5
GTEX-QMR6-0011-R1A-SM-32PKW
50-59 years, male
185.0
GTEX-1LB8K-0011-R1b-SM-EZ6MV
50-59 years, male
183.8
GTEX-1GN1U-0011-R1a-SM-CJI25
50-59 years, female
183.6
GTEX-1C64N-0011-R1b-SM-7P8Q7
50-59 years, male
183.5
GTEX-13QIC-0011-R1a-SM-5O9CJ
60-69 years, female
183.2
GTEX-1B8L1-0011-R1a-SM-7P8SS
60-69 years, male
182.6
GTEX-1H3NZ-0011-R1a-SM-CKZP5
60-69 years, male
182.3
GTEX-1HBPI-0011-R1b-SM-A9SKF
50-59 years, male
182.3
GTEX-1EKGG-0011-R1b-SM-9QEI1
60-69 years, male
182.1
GTEX-13OW6-0011-R1a-SM-5L3HQ
50-59 years, male
181.3
GTEX-17EVP-0011-R1a-SM-7DHLA
40-49 years, male
181.2
GTEX-14LZ3-0011-R1a-SM-69LP5
60-69 years, female
180.9
GTEX-13S7M-0011-R1b-SM-5PNZE
60-69 years, female
180.2
GTEX-WVLH-0011-R1A-SM-4MVOK
50-59 years, male
179.4
GTEX-16XZZ-0011-R1a-SM-7LTAH
60-69 years, male
178.8
GTEX-WWYW-0011-R1A-SM-3TW8G
50-59 years, female
178.0
GTEX-1HGF4-0011-R1a-SM-CJI3S
60-69 years, male
177.9
GTEX-PVOW-0011-R1A-SM-32PL6
40-49 years, male
177.7
GTEX-13X6I-0011-R1b-SM-5PNZC
60-69 years, male
175.6
GTEX-T6MN-0011-R1A-SM-32QOY
50-59 years, male
175.1
GTEX-16GPK-0011-R1b-SM-7EWDH
60-69 years, male
174.2
GTEX-13OW7-0011-R1b-SM-5L3HF
50-59 years, male
173.6
GTEX-1H23P-0011-R1a-SM-ACKVC
60-69 years, male
173.4
GTEX-11EI6-0011-R1a-SM-DO93L
60-69 years, male
173.3
GTEX-17MF6-0011-R1a-SM-72D6O
40-49 years, male
172.9
GTEX-1H3VE-0011-R1a-SM-A9G1K
40-49 years, male
172.3
GTEX-13NYS-0011-R1b-SM-5MR55
60-69 years, male
172.2
GTEX-1HR98-0011-R1a-SM-ARZLQ
60-69 years, male
171.6
GTEX-1I1HK-0011-R1b-SM-CM2T7
60-69 years, male
171.5
GTEX-183WM-0011-R1a-SM-718A8
70-79 years, female
171.2
GTEX-ZUA1-0011-R1a-SM-4YCE2
40-49 years, male
170.2
GTEX-P44G-0011-R1A-SM-2I3FE
30-39 years, male
169.5
GTEX-145LS-0011-R1b-SM-5PNUP
60-69 years, female
169.4
GTEX-17EVQ-0011-R1a-SM-7189S
70-79 years, male
169.4
GTEX-1I1GV-0011-R1a-SM-CL559
60-69 years, male
169.4
GTEX-1EH9U-0011-R1b-SM-CJI2B
60-69 years, male
168.6
GTEX-13JVG-0011-R1a-SM-5KM32
60-69 years, male
168.5
GTEX-14ABY-0011-R1a-SM-6EU2W
50-59 years, male
168.5
GTEX-1BAJH-0011-R1a-SM-7P8SV
70-79 years, male
167.9
GTEX-13NZA-0011-R1b-SM-5LUAF
60-69 years, male
167.5
GTEX-11WQC-0011-R1b-SM-DO932
60-69 years, male
167.3
GTEX-1A32A-0011-R1a-SM-7P8SQ
50-59 years, female
166.7
GTEX-14ASI-0011-R1b-SM-5S2TY
60-69 years, male
166.3
GTEX-1H1ZS-0011-R1b-SM-A9G1E
70-79 years, male
165.7
GTEX-13G51-0011-R1a-SM-5LZYR
60-69 years, male
165.6
GTEX-1GF9V-0011-R1a-SM-CKZNQ
60-69 years, male
164.8
GTEX-15UF6-0011-R1a-SM-9QEGH
70-79 years, female
164.6
GTEX-1H1DG-0011-R1b-SM-CKZP1
70-79 years, male
163.8
GTEX-1J1OQ-0011-R1a-SM-A9G1Z
40-49 years, female
162.7
GTEX-ZVZQ-0011-R1a-SM-57WBU
60-69 years, female
162.1
GTEX-YJ89-0011-R1a-SM-4RGLS
60-69 years, male
161.3
GTEX-1F6IF-0011-R1b-SM-9WG78
60-69 years, male
160.9
GTEX-13RTL-0011-R1a-SM-5PNZ8
40-49 years, male
160.4
GTEX-1E2YA-0011-R1b-SM-CJI29
50-59 years, male
160.4
GTEX-ZAB4-0011-R1a-SM-4RGNO
40-49 years, male
159.9
GTEX-1J8Q2-0011-R1a-SM-D4P2D
60-69 years, male
159.8
GTEX-P44H-0011-R1A-SM-3NM8J
40-49 years, male
159.4
GTEX-13PDP-0011-R1a-SM-5PNX5
60-69 years, male
158.6
GTEX-ZDXO-0011-R1a-SM-4WKF4
60-69 years, male
158.6
GTEX-17F97-0011-R1b-SM-7IGM9
50-59 years, male
158.0
GTEX-X4EP-0011-R1A-SM-3P624
60-69 years, female
157.7
GTEX-11ZVC-0011-R1b-SM-5BC6M
50-59 years, female
157.6
GTEX-13OVJ-0011-R1b-SM-5L3I6
50-59 years, female
157.4
GTEX-T5JC-0011-R1A-SM-32PM6
20-29 years, male
155.4
GTEX-S7SE-0011-R1A-SM-2XCDE
50-59 years, male
155.2
GTEX-XMD1-0011-R1A-SM-4AT4C
60-69 years, male
155.2
GTEX-13CF2-0011-R1a-SM-5LZY1
60-69 years, male
154.6
GTEX-1I1GQ-0011-R1a-SM-CY8GG
50-59 years, male
154.5
GTEX-1CAV2-0011-R1a-SM-ARZML
40-49 years, female
153.8
GTEX-14C5O-0011-R1b-SM-6AJBW
60-69 years, male
153.4
GTEX-11GSO-0011-R1b-SM-57WD3
60-69 years, male
152.9
GTEX-11UD1-0011-R1b-SM-5BC7D
40-49 years, female
152.7
GTEX-11ONC-0011-R1a-SM-57WD4
60-69 years, male
152.5
GTEX-139T8-0011-R1a-SM-5HL75
60-69 years, male
152.1
GTEX-14E7W-0011-R1b-SM-5YYAT
70-79 years, male
151.6
GTEX-ZF28-0011-R1a-SM-4WWD1
60-69 years, male
150.9
GTEX-11GSP-0011-R1a-SM-9QEJ3
60-69 years, female
150.3
GTEX-13FHP-0011-R1b-SM-5K7XL
50-59 years, male
147.9
GTEX-17JCI-0011-R1b-SM-718A3
60-69 years, female
147.7
GTEX-16Z82-0011-R1b-SM-7EPHZ
60-69 years, male
146.9
GTEX-1GZHY-0011-R1a-SM-CE6RR
50-59 years, female
146.0
GTEX-X4XX-0011-R1B-SM-3P622
60-69 years, male
145.3
GTEX-13FHO-0011-R1b-SM-5KLZG
60-69 years, male
144.0
GTEX-14PJO-0011-R1b-SM-6AJAK
60-69 years, male
142.7
GTEX-14PQA-0011-R1b-SM-6EU1G
50-59 years, female
142.3
GTEX-144GO-0011-R1a-SM-5PNWO
60-69 years, male
142.2
GTEX-NPJ7-0011-R1a-SM-3GACT
60-69 years, female
141.8
GTEX-1F75W-0011-R1a-SM-ARU81
60-69 years, male
140.1
GTEX-13RTJ-0011-R1a-SM-5O9D9
60-69 years, male
139.9
GTEX-1212Z-0011-R1b-SM-5BC72
60-69 years, male
138.1
GTEX-QDT8-0011-R1A-SM-32PKS
30-39 years, female
135.7
GTEX-OHPN-0011-R1A-SM-2I5GB
60-69 years, female
127.4
GTEX-PWO3-0011-R1A-SM-2I5EW
60-69 years, female
127.1
GTEX-R55E-0011-R1A-SM-2TC6N
20-29 years, male
123.7
GTEX-UTHO-0011-R1A-SM-3GIJO
60-69 years, male
123.2
GTEX-13FTY-0011-R1a-SM-5LZXE
40-49 years, female
123.1
GTEX-14BIM-0011-R1a-SM-69LQI
60-69 years, female
122.6
GTEX-132Q8-0011-R1a-SM-5EGLK
60-69 years, male
121.6
GTEX-13OW8-0011-R1a-SM-5L3HI
60-69 years, male
119.8
GTEX-ZE7O-0011-R1a-SM-57WDM
50-59 years, female
116.4
GTEX-NPJ8-0011-R1a-SM-33HCB
40-49 years, male
110.9
GTEX-13SLW-0011-R1a-SM-5S2W7
70-79 years, male
109.6
GTEX-QVUS-0011-R1A-SM-3GAD2
60-69 years, female
107.5
GTEX-QVJO-0011-R1A-SM-2S1QI
60-69 years, female
100.9
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
255.9
Mouse sample
Sample description
nTPM
Entorhinal cortex nTPM: 247.1
Samples: 4
Max nTPM: 256.8
Min nTPM: 231.6
Sample A
Male
231.6
Sample B
Male
248.4
Sample C
Female
256.8
Sample D
Female
251.4
Hippocampal formation nTPM: 256.0
Samples: 4
Max nTPM: 277.0
Min nTPM: 243.2
Sample A
Male
277.0
Sample B
Male
243.2
Sample C
Female
254.5
Sample D
Female
249.1
HIPPOCAMPAL FORMATION - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.