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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
31.1
nTPM
HPA Brain:
29.0
nTPM
GTEx:
31.1
nTPM
FANTOM5:
26.9
Scaled Tags Per Million
Pig:
62.4
nTPM
Mouse:
12.3
nTPM
Allen mouse:
0.4
Expression energy
MIDBRAIN - Annotated protein expression
Pending normal tissue analysis
MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
29.0
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 21.1
2019
Male, age 18, unknown
34.9
2411
Female, age 72, unknown
26.3
2586
Male, age 75, left hemisphere
24.7
1830
Male, age 51, unknown
24.5
1870
Female, age 42, unknown
23.4
1833
Male, age 53, unknown
21.7
2828
Female, age 72, unknown
19.0
1827
Male, age 72, unknown
14.5
2666
Male, age 74, left hemisphere
13.9
2219
Male, age 76, both hemispheres
8.6
Dorsal raphe nucleus nTPM: 17.4
2750
Male, age 76, both hemispheres
31.0
1828
Male, age 53, unknown
17.3
2047
Male, age 72, unknown
17.0
2016
Female, age 72, unknown
11.0
2298
Female, age 72, unknown
10.8
Inferior colliculus nTPM: 14.0
1890
Male, age 53, unknown
16.8
1848
Female, age 42, unknown
14.7
2097
Female, age 72, unknown
13.5
2849
Male, age 72, unknown
11.0
Median raphe nucleus nTPM: 20.4
2220
Male, age 76, midline
20.4
Periaquaductal grey, anterior nTPM: 16.1
2502
Female, age 75, unknown
21.5
1947
Male, age 18, unknown
13.4
1795
Male, age 51, unknown
13.3
Periaquaductal grey, dorsal nTPM: 11.2
1831
Male, age 72, unknown
16.6
2850
Male, age 76, both hemispheres
11.6
2464
Female, age 72, unknown
10.5
1840
Male, age 53, unknown
5.9
Periaquaductal grey, lateral nTPM: 13.7
2272
Male, age 74, both hemispheres
17.7
2053
Male, age 18, unknown
14.4
2140
Male, age 76, both hemispheres
9.0
Pretectal area nTPM: 14.6
2273
Male, age 74, both hemispheres
25.5
1816
Male, age 51, unknown
15.9
1815
Male, age 53, unknown
15.0
2007
Male, age 72, unknown
14.9
2407
Male, age 75, both hemispheres
14.9
1817
Female, age 42, unknown
14.0
2667
Female, age 75, unknown
13.8
2316
Male, age 76, right hemisphere
13.2
2825
Male, age 18, unknown
13.0
2224
Female, age 72, unknown
10.5
1944
Female, age 72, unknown
9.6
Red nucleus nTPM: 29.0
1865
Male, age 51, unknown
38.3
2588
Male, age 74, left hemisphere
33.2
2785
Male, age 18, unknown
32.7
1904
Male, age 53, unknown
31.5
1821
Female, age 72, unknown
31.3
2823
Male, age 76, right hemisphere
30.5
2584
Male, age 75, left hemisphere
30.0
2769
Male, age 72, unknown
29.6
2227
Male, age 72, unknown
28.8
1954
Female, age 42, unknown
24.9
2725
Female, age 75, unknown
21.2
2503
Female, age 72, unknown
16.6
Substantia nigra nTPM: 12.3
1889
Female, age 72, unknown
18.3
2583
Male, age 75, right hemisphere
17.1
1941
Male, age 53, unknown
15.0
2665
Male, age 74, both hemispheres
13.2
1851
Male, age 51, unknown
12.0
1916
Female, age 42, unknown
11.9
2409
Female, age 72, unknown
10.3
2241
Male, age 72, unknown
10.1
2590
Female, age 75, unknown
8.9
2699
Male, age 18, unknown
5.5
Superior colliculus nTPM: 16.9
2587
Male, age 74, left hemisphere
26.3
2668
Female, age 75, unknown
21.5
2261
Male, age 18, unknown
18.7
2664
Male, age 75, both hemispheres
18.6
1913
Female, age 42, unknown
18.0
1995
Male, age 72, unknown
17.7
1796
Male, age 53, unknown
14.0
1895
Male, age 76, right hemisphere
11.9
2087
Female, age 72, unknown
11.6
1839
Male, age 51, unknown
10.7
Ventral tegmental area nTPM: 22.9
2223
Female, age 72, unknown
45.0
2021
Male, age 53, unknown
19.9
1942
Male, age 51, unknown
19.8
2218
Male, age 76, both hemispheres
19.8
2410
Female, age 72, unknown
19.6
1915
Female, age 42, unknown
13.5
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
31.1
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 31.1
Samples: 139
Max nTPM: 122.1
Min nTPM: 6.5
Std nTPM: 20.6
Median nTPM: 25.8
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
122.1
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
120.7
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
116.6
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
78.4
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
69.2
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
68.9
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
67.1
GTEX-N7MT-0011-R2a-SM-2I3GI
60-69 years, female
63.8
GTEX-NPJ8-0011-R2a-SM-2TC6M
40-49 years, male
61.9
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
59.7
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
59.3
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
58.8
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
57.5
GTEX-P44G-0011-R2A-SM-2XCD2
30-39 years, male
57.2
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
56.2
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
56.1
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
54.8
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
54.7
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
52.1
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
51.1
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
50.7
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
50.1
GTEX-N7MS-0011-R2a-SM-2HML6
60-69 years, male
49.2
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
49.1
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
48.1
GTEX-PWO3-0011-R2A-SM-2S1OX
60-69 years, female
48.0
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
46.4
GTEX-NL4W-0011-R2a-SM-2I5GV
50-59 years, male
45.5
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
45.3
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
44.7
GTEX-1IKOH-0011-R2a-SM-CMKHO
60-69 years, female
43.7
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
43.4
GTEX-OXRO-0011-R2A-SM-3NB1W
60-69 years, female
42.5
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
42.2
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
41.3
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
40.4
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
40.2
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
39.9
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
38.6
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
38.2
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
37.5
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
35.8
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
35.4
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
35.0
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
33.9
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
33.6
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
33.6
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
33.5
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
32.7
GTEX-18464-0011-R2a-SM-731AL
50-59 years, male
32.6
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
32.3
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
32.0
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
31.9
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
31.7
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
30.7
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
30.0
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
29.7
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
29.4
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
28.0
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
27.9
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
27.4
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
27.0
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
26.7
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
26.5
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
26.4
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
26.3
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
26.3
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
26.3
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
26.3
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
25.8
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
25.8
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
24.8
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
24.6
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
24.5
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
23.9
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
23.8
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
23.6
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
22.2
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
22.1
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
21.7
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
21.4
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
20.9
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
20.8
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
20.7
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
20.6
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
19.9
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
19.9
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
19.9
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
19.8
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
19.7
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
19.7
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
19.5
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
18.9
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
18.6
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
18.5
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
18.5
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
18.4
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
17.7
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
17.6
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
17.5
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
17.2
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
17.1
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
17.1
GTEX-T5JC-0011-R2A-SM-32PLZ
20-29 years, male
16.9
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
16.7
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
16.5
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
16.0
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
15.7
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
15.6
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
15.3
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
15.3
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
15.2
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
15.2
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
15.0
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
15.0
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
14.7
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
14.6
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
14.5
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
14.4
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
14.4
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
14.0
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
13.6
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
13.2
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
12.5
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
12.4
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
12.4
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
12.0
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
11.9
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
11.5
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
11.2
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
10.6
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
10.6
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
9.2
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
8.3
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
7.8
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
7.1
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
7.0
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
6.9
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
6.5
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MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
12.3
Mouse sample
Sample description
nTPM
Midbrain nTPM: 12.3
Samples: 4
Max nTPM: 14.6
Min nTPM: 7.1
Sample A
Male
14.6
Sample B
Male
7.1
Sample C
Female
14.4
Sample D
Female
13.2
MIDBRAIN - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.