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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
123.5
nTPM
HPA Brain:
57.5
nTPM
GTEx:
123.5
nTPM
FANTOM5:
39.6
Scaled Tags Per Million
Pig:
44.1
nTPM
Mouse:
105.9
nTPM
Allen mouse:
0.1
Expression energy
MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
57.5
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 49.1
1827
Male, age 72, unknown
59.7
2666
Male, age 74, left hemisphere
56.4
2411
Female, age 72, unknown
53.3
2828
Female, age 72, unknown
51.3
1833
Male, age 53, unknown
49.2
1830
Male, age 51, unknown
48.6
2219
Male, age 76, both hemispheres
46.1
2586
Male, age 75, left hemisphere
45.1
2019
Male, age 18, unknown
43.1
1870
Female, age 42, unknown
38.3
Dorsal raphe nucleus nTPM: 52.6
1828
Male, age 53, unknown
63.5
2047
Male, age 72, unknown
62.1
2750
Male, age 76, both hemispheres
57.8
2298
Female, age 72, unknown
49.3
2016
Female, age 72, unknown
30.2
Inferior colliculus nTPM: 32.0
2097
Female, age 72, unknown
35.7
1848
Female, age 42, unknown
31.3
1890
Male, age 53, unknown
30.6
2849
Male, age 72, unknown
30.2
Median raphe nucleus nTPM: 54.2
2220
Male, age 76, midline
54.2
Periaquaductal grey, anterior nTPM: 39.9
1795
Male, age 51, unknown
44.5
1947
Male, age 18, unknown
38.0
2502
Female, age 75, unknown
37.1
Periaquaductal grey, dorsal nTPM: 29.2
2464
Female, age 72, unknown
39.1
2850
Male, age 76, both hemispheres
30.0
1831
Male, age 72, unknown
27.8
1840
Male, age 53, unknown
20.0
Periaquaductal grey, lateral nTPM: 34.6
2272
Male, age 74, both hemispheres
38.6
2053
Male, age 18, unknown
36.7
2140
Male, age 76, both hemispheres
28.6
Pretectal area nTPM: 37.9
2007
Male, age 72, unknown
49.2
1815
Male, age 53, unknown
45.6
1817
Female, age 42, unknown
44.0
1816
Male, age 51, unknown
43.3
1944
Female, age 72, unknown
40.6
2825
Male, age 18, unknown
38.1
2407
Male, age 75, both hemispheres
34.9
2224
Female, age 72, unknown
33.7
2273
Male, age 74, both hemispheres
33.5
2316
Male, age 76, right hemisphere
29.2
2667
Female, age 75, unknown
25.3
Red nucleus nTPM: 51.1
2725
Female, age 75, unknown
72.2
2588
Male, age 74, left hemisphere
61.6
2823
Male, age 76, right hemisphere
56.8
1865
Male, age 51, unknown
53.7
1821
Female, age 72, unknown
53.6
2503
Female, age 72, unknown
47.8
2227
Male, age 72, unknown
46.7
2584
Male, age 75, left hemisphere
46.5
1954
Female, age 42, unknown
45.0
2785
Male, age 18, unknown
44.2
1904
Male, age 53, unknown
43.1
2769
Male, age 72, unknown
42.1
Substantia nigra nTPM: 57.5
1916
Female, age 42, unknown
97.5
2241
Male, age 72, unknown
65.7
1941
Male, age 53, unknown
62.1
2409
Female, age 72, unknown
61.8
2590
Female, age 75, unknown
51.5
1851
Male, age 51, unknown
50.8
1889
Female, age 72, unknown
49.8
2699
Male, age 18, unknown
46.9
2665
Male, age 74, both hemispheres
44.6
2583
Male, age 75, right hemisphere
43.7
Superior colliculus nTPM: 35.4
2261
Male, age 18, unknown
50.7
1796
Male, age 53, unknown
45.2
2668
Female, age 75, unknown
40.8
1839
Male, age 51, unknown
39.8
2587
Male, age 74, left hemisphere
37.3
2087
Female, age 72, unknown
34.2
2664
Male, age 75, both hemispheres
33.5
1895
Male, age 76, right hemisphere
28.4
1913
Female, age 42, unknown
24.2
1995
Male, age 72, unknown
20.5
Ventral tegmental area nTPM: 50.9
2223
Female, age 72, unknown
65.1
2410
Female, age 72, unknown
60.2
1915
Female, age 42, unknown
55.3
2218
Male, age 76, both hemispheres
52.8
2021
Male, age 53, unknown
37.7
1942
Male, age 51, unknown
33.9
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
123.5
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 123.5
Samples: 139
Max nTPM: 320.5
Min nTPM: 24.7
Std nTPM: 60.8
Median nTPM: 113.7
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
320.5
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
310.9
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
284.7
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
266.8
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
263.9
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
257.7
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
243.5
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
240.3
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
232.1
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
227.8
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
224.8
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
220.5
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
213.5
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
210.9
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
207.6
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
206.6
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
202.2
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
200.8
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
196.8
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
194.0
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
193.3
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
185.6
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
184.4
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
184.3
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
183.9
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
178.5
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
177.2
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
170.9
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
168.2
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
164.0
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
163.8
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
162.2
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
153.8
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
153.1
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
153.0
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
153.0
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
150.7
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
148.9
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
145.0
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
142.2
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
142.1
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
141.5
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
141.5
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
141.3
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
141.2
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
138.9
GTEX-T5JC-0011-R2A-SM-32PLZ
20-29 years, male
136.6
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
132.9
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
129.9
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
129.6
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
129.0
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
127.7
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
127.5
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
125.4
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
124.3
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
123.5
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
123.1
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
122.9
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
122.3
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
121.9
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
120.5
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
119.3
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
118.7
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
118.4
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
117.5
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
116.2
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
115.7
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
115.0
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
114.0
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
113.7
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
111.4
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
110.5
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
107.1
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
106.2
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
105.9
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
105.0
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
104.1
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
103.3
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
103.2
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
102.8
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
102.8
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
101.2
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
99.6
GTEX-N7MS-0011-R2a-SM-2HML6
60-69 years, male
99.5
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
99.5
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
99.3
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
99.0
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
98.4
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
97.9
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
97.1
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
95.9
GTEX-OXRO-0011-R2A-SM-3NB1W
60-69 years, female
95.2
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
94.9
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
94.6
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
93.5
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
93.1
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
92.0
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
91.5
GTEX-1IKOH-0011-R2a-SM-CMKHO
60-69 years, female
90.4
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
90.2
GTEX-18464-0011-R2a-SM-731AL
50-59 years, male
89.1
GTEX-P44G-0011-R2A-SM-2XCD2
30-39 years, male
88.1
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
87.4
GTEX-PWO3-0011-R2A-SM-2S1OX
60-69 years, female
85.4
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
84.0
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
83.4
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
82.7
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
80.8
GTEX-NL4W-0011-R2a-SM-2I5GV
50-59 years, male
80.5
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
78.8
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
76.5
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
75.3
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
72.0
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
71.4
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
70.8
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
68.4
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
65.8
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
65.4
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
60.7
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
59.1
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
57.7
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
57.7
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
57.2
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
57.1
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
53.6
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
52.7
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
49.4
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
48.6
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
48.0
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
43.9
GTEX-NPJ8-0011-R2a-SM-2TC6M
40-49 years, male
43.9
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
41.3
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
31.9
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
31.9
GTEX-N7MT-0011-R2a-SM-2I3GI
60-69 years, female
30.6
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
29.8
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
29.3
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
28.4
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
24.7
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MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
105.9
Mouse sample
Sample description
nTPM
Midbrain nTPM: 106.0
Samples: 4
Max nTPM: 118.3
Min nTPM: 99.0
Sample A
Male
103.1
Sample B
Male
99.0
Sample C
Female
103.4
Sample D
Female
118.3
MIDBRAIN - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.