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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
HPA Brain:
289.1
nTPM
FANTOM5:
78.4
Scaled Tags Per Million
Pig:
167.5
nTPM
Allen mouse:
7.7
Expression energy
PONS - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
289.1
Sample id
Sample description
nTPM
Anterior cochlear nucleus, ventral nTPM: 247.7
2301
Female, age 85, both hemispheres
297.3
2188
Female, age 91, both hemispheres
255.7
2090
Male, age 80, both hemispheres
227.7
1984
Male, age 76, both hemispheres
210.0
Dorsal cochlear nucleus nTPM: 235.7
2187
Female, age 91, both hemispheres
288.7
2802
Male, age 74, right hemisphere
240.4
2058
Male, age 76, both hemispheres
227.2
2378
Male, age 80, both hemispheres
219.6
2370
Male, age 61, both hemispheres
202.7
Dorsal tegmental nucleus nTPM: 244.7
2358
Male, age 61, both hemispheres
272.9
2083
Male, age 80, both hemispheres
261.3
2326
Male, age 74, both hemispheres
232.2
1936
Male, age 76, left hemisphere
212.3
Dorsolateral tegmental area nTPM: 226.1
2751
Female, age 85, both hemispheres
265.0
2337
Male, age 61, both hemispheres
259.3
2654
Male, age 80, both hemispheres
241.7
2141
Male, age 76, both hemispheres
191.9
2360
Male, age 74, both hemispheres
172.5
Kolliker-Fuse nucleus nTPM: 216.4
2793
Female, age 91, left hemisphere
272.1
2163
Male, age 80, both hemispheres
231.5
2315
Male, age 76, right hemisphere
145.6
Lateral lemniscal nuclei nTPM: 219.7
2320
Female, age 91, left hemisphere
245.3
2169
Male, age 76, both hemispheres
236.8
2453
Male, age 74, right hemisphere
210.0
2746
Female, age 85, left hemisphere
203.4
2036
Male, age 80, both hemispheres
203.0
Lateral parabrachial nucleus nTPM: 252.2
2790
Male, age 61, both hemispheres
357.8
2792
Male, age 76, both hemispheres
241.6
2013
Male, age 80, both hemispheres
216.8
2139
Female, age 85, right hemisphere
192.6
Lateral vestibular nucleus nTPM: 288.9
2311
Male, age 80, both hemispheres
302.3
2184
Male, age 76, both hemispheres
275.5
Locus coeruleus nTPM: 258.9
2720
Male, age 74, both hemispheres
306.4
2162
Male, age 80, both hemispheres
281.2
2123
Female, age 91, both hemispheres
276.1
2317
Female, age 72, unknown
258.3
1980
Male, age 76, both hemispheres
254.5
2014
Male, age 55, unknown
253.8
2788
Male, age 74, unknown
181.7
Medial parabrachial nucleus nTPM: 289.1
2170
Female, age 91, both hemispheres
354.7
2156
Male, age 61, both hemispheres
341.6
2463
Female, age 85, right hemisphere
261.4
2786
Male, age 76, both hemispheres
255.3
2854
Male, age 80, both hemispheres
232.2
Medial periolivary nuclei nTPM: 208.7
2458
Female, age 91, both hemispheres
223.5
2063
Male, age 76, both hemispheres
218.5
2081
Male, age 80, both hemispheres
203.3
2791
Male, age 74, right hemisphere
200.0
2171
Female, age 85, both hemispheres
198.5
Motor facial nucleus nTPM: 223.5
2126
Male, age 61, both hemispheres
253.8
2365
Male, age 74, right hemisphere
227.4
2062
Male, age 76, both hemispheres
226.0
2697
Female, age 85, both hemispheres
224.2
2795
Female, age 91, both hemispheres
216.0
2327
Male, age 80, both hemispheres
193.5
Motor trigeminal nucleus nTPM: 230.5
2321
Female, age 91, both hemispheres
260.7
2560
Male, age 74, both hemispheres
250.7
2335
Male, age 61, both hemispheres
235.7
2309
Male, age 76, both hemispheres
230.6
2079
Male, age 80, both hemispheres
174.8
Nuclei of the trapezoid body nTPM: 212.2
2166
Male, age 80, both hemispheres
230.2
2159
Male, age 61, both hemispheres
216.6
2368
Female, age 91, both hemispheres
215.2
1983
Male, age 76, both hemispheres
211.1
2735
Female, age 85, both hemispheres
187.8
Nucleus raphe magnus nTPM: 215.5
2051
Male, age 76, both hemispheres
241.9
2455
Male, age 74, both hemispheres
218.2
2328
Male, age 80, both hemispheres
217.3
2459
Female, age 91, both hemispheres
215.4
2160
Male, age 61, both hemispheres
207.2
2172
Female, age 85, both hemispheres
193.2
Paramedian reticular nucleus nTPM: 239.3
2313
Male, age 61, both hemispheres
262.2
2057
Male, age 80, both hemispheres
256.8
2050
Female, age 85, both hemispheres
225.8
2052
Male, age 76, both hemispheres
212.6
Pedunculopontine tegmental nucleus nTPM: 242.4
2334
Male, age 80, both hemispheres
253.4
2338
Male, age 61, both hemispheres
246.5
1921
Female, age 85, both hemispheres
227.2
Pontine nuclei nTPM: 228.0
2454
Male, age 74, left hemisphere
257.4
1968
Male, age 76, left hemisphere
247.9
2109
Female, age 72, unknown
243.0
2319
Female, age 91, both hemispheres
241.7
1863
Male, age 55, unknown
231.4
2787
Female, age 85, both hemispheres
228.4
2115
Male, age 80, left hemisphere
197.7
2727
Male, age 61, right hemisphere
176.8
Pontine raphe nucleus nTPM: 210.7
2853
Male, age 76, midline
228.4
2122
Female, age 85, midline
193.0
Posteroventral cochlear nucleus nTPM: 234.6
2070
Male, age 76, both hemispheres
271.0
2341
Male, age 80, both hemispheres
247.3
2135
Female, age 91, both hemispheres
230.1
2371
Male, age 61, both hemispheres
228.3
2752
Female, age 85, both hemispheres
196.5
Principal sensory trigeminal nucleus nTPM: 224.4
2324
Male, age 76, both hemispheres
248.4
2367
Female, age 91, left hemisphere
243.1
2158
Male, age 61, both hemispheres
231.8
2008
Male, age 80, left hemisphere
174.3
Reticular pontine nucleus, caudal nTPM: 239.8
2559
Male, age 74, both hemispheres
280.1
2457
Female, age 91, both hemispheres
252.0
2092
Male, age 76, both hemispheres
230.5
2332
Male, age 80, right hemisphere
196.5
Reticular pontine nucleus, oral nTPM: 245.1
2167
Male, age 76, both hemispheres
262.0
2361
Male, age 74, both hemispheres
254.8
1939
Male, age 80, both hemispheres
253.1
2366
Female, age 91, both hemispheres
239.8
2012
Female, age 85, both hemispheres
215.6
Reticulotegmental nucleus nTPM: 227.7
2322
Female, age 91, both hemispheres
255.6
2452
Male, age 74, both hemispheres
247.0
2333
Male, age 80, both hemispheres
208.2
2325
Male, age 76, both hemispheres
200.1
Spinal trigeminal nucleus, oral nTPM: 229.6
2164
Male, age 80, both hemispheres
253.3
1978
Male, age 76, both hemispheres
240.3
2737
Female, age 85, both hemispheres
195.2
Subcoeruleus area nTPM: 234.5
2369
Female, age 85, left hemisphere
267.1
2451
Male, age 74, both hemispheres
239.3
2323
Female, age 91, left hemisphere
233.8
2089
Male, age 76, left hemisphere
223.2
1958
Male, age 80, both hemispheres
209.0
Superior olive nTPM: 221.0
2020
Male, age 76, both hemispheres
235.8
2329
Male, age 80, right hemisphere
227.5
2364
Male, age 74, right hemisphere
224.6
2561
Female, age 91, both hemispheres
222.4
1875
Female, age 85, both hemispheres
194.8
Ventral periolivary nuclei nTPM: 201.4
2165
Male, age 80, both hemispheres
217.6
2023
Male, age 76, both hemispheres
217.4
2130
Female, age 85, both hemispheres
195.0
2794
Female, age 91, left hemisphere
175.7
Ventrolateral tegmental area, A5 NE cell group nTPM: 236.6
2359
Male, age 61, both hemispheres
304.0
2456
Female, age 91, both hemispheres
238.7
1959
Male, age 76, both hemispheres
229.3
2840
Female, age 85, both hemispheres
225.1
2449
Male, age 74, both hemispheres
213.9
2161
Male, age 80, both hemispheres
208.9
PONS - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
167.5
Pig sample
Sample description
nTPM
Pons nTPM: 167.5
Samples: 4
Max nTPM: 190.8
Min nTPM: 131.0
Sample A
Female
188.7
Sample B
Female
131.0
Sample C
Male
159.5
Sample D
Male
190.8
PONS - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.