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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
h
m
l
n
Glial cells:
Not detected
Neuronal cells:
Medium
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
215.0
nTPM
HPA Brain:
337.8
nTPM
GTEx:
215.0
nTPM
FANTOM5:
57.5
Scaled Tags Per Million
Pig:
160.7
nTPM
Mouse:
170.1
nTPM
Allen mouse:
11.1
Expression energy
HIPPOCAMPUS - Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
Antibody HPA079657
Glial cells
Not detected
Neuronal cells
Medium
HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
337.8
Sample id
Sample description
nTPM
Hippocampus nTPM: 337.8
2621
Female, age 67, right hemisphere
364.8
2529
Female, age 94, left hemisphere
354.5
1898
Male, age 80, left hemisphere
347.0
1855
Male, age 76, left hemisphere
333.5
1911
Female, age 85, right hemisphere
332.5
2148
Female, age 91, left hemisphere
294.4
Dentate gyrus nTPM: 305.5
2530
Female, age 94, left hemisphere
358.8
1927
Female, age 91, both hemispheres
320.8
2531
Female, age 67, both hemispheres
319.0
2010
Male, age 76, both hemispheres
298.0
2528
Male, age 74, both hemispheres
272.3
2246
Female, age 85, both hemispheres
264.0
Entorhinal gyrus nTPM: 265.8
2613
Female, age 94, left hemisphere
302.5
2117
Female, age 91, right hemisphere
274.8
2764
Male, age 80, right hemisphere
272.1
1938
Female, age 85, left hemisphere
258.3
1787
Male, age 76, left hemisphere
250.2
2686
Male, age 75, right hemisphere
237.0
Hippocampus, CA1 nTPM: 326.5
2749
Male, age 80, left hemisphere
481.6
2527
Male, age 74, both hemispheres
377.1
1873
Female, age 85, both hemispheres
324.9
2045
Male, age 76, both hemispheres
227.8
2082
Female, age 91, right hemisphere
221.2
Hippocampus, CA2 nTPM: 309.4
1963
Male, age 80, left hemisphere
490.9
2437
Female, age 94, left hemisphere
326.1
1892
Male, age 76, both hemispheres
304.9
2249
Male, age 74, both hemispheres
270.7
2113
Female, age 91, right hemisphere
257.6
1940
Female, age 85, left hemisphere
206.4
Hippocampus, CA3 nTPM: 321.3
2137
Male, age 80, left hemisphere
419.4
2861
Female, age 67, both hemispheres
380.8
2620
Female, age 94, left hemisphere
307.7
1867
Male, age 76, both hemispheres
297.0
1891
Female, age 85, both hemispheres
270.8
2436
Male, age 74, both hemispheres
252.0
Parahippocampal cortex nTPM: 245.8
2245
Female, age 91, both hemispheres
347.7
2018
Male, age 76, both hemispheres
278.5
1933
Female, age 85, both hemispheres
250.9
2250
Female, age 67, right hemisphere
249.2
2532
Female, age 72, left hemisphere
235.6
2692
Male, age 74, both hemispheres
228.6
1850
Male, age 80, both hemispheres
225.1
2693
Female, age 94, both hemispheres
224.5
1990
Female, age 91, right hemisphere
210.0
2622
Female, age 67, right hemisphere
207.6
Perirhinal gyrus nTPM: 251.4
2521
Female, age 94, right hemisphere
324.7
1847
Female, age 91, left hemisphere
272.1
1794
Male, age 80, right hemisphere
256.6
1841
Female, age 85, right hemisphere
203.2
2848
Male, age 76, right hemisphere
200.3
Subiculum nTPM: 272.2
1901
Male, age 80, both hemispheres
318.1
2042
Male, age 76, both hemispheres
313.9
1977
Female, age 85, both hemispheres
275.1
2438
Female, age 94, left hemisphere
249.4
2619
Male, age 74, both hemispheres
247.3
2729
Female, age 91, right hemisphere
229.7
HIPPOCAMPAL FORMATION - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
215.0
GTEx sample id
Sample description
nTPM
Brain - Hippocampus Average nTPM: 215.0
Samples: 197
Max nTPM: 522.2
Min nTPM: 35.7
Std nTPM: 81.8
Median nTPM: 196.2
GTEX-13PDP-0011-R1a-SM-5PNX5
60-69 years, male
522.2
GTEX-WVLH-0011-R1A-SM-4MVOK
50-59 years, male
506.6
GTEX-1GMR8-0011-R1b-SM-CJI2O
50-59 years, female
461.0
GTEX-13O3Q-0011-R1b-SM-5KM3L
50-59 years, male
424.8
GTEX-1F75A-0011-R1b-SM-CE6RA
50-59 years, male
423.3
GTEX-144GL-0011-R1a-SM-5PNZ5
50-59 years, male
417.0
GTEX-1IOXB-0011-R1a-SM-D4P27
50-59 years, male
407.5
GTEX-11EI6-0011-R1a-SM-DO93L
60-69 years, male
398.3
GTEX-13FXS-0011-R1a-SM-5K7U6
50-59 years, male
391.8
GTEX-11DXW-0011-R1a-SM-DNZZD
40-49 years, male
376.1
GTEX-14PN4-0011-R1b-SM-69LP8
50-59 years, male
375.6
GTEX-1HT8W-0011-R1b-SM-CJI3V
30-39 years, male
372.6
GTEX-Q2AG-0011-R1A-SM-2HMJI
40-49 years, female
368.4
GTEX-13FLW-0011-R1b-SM-5LZX2
50-59 years, male
359.3
GTEX-17JCI-0011-R1b-SM-718A3
60-69 years, female
348.1
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y
40-49 years, male
346.5
GTEX-1IKK5-0011-R1b-SM-CE6SQ
60-69 years, male
341.7
GTEX-17HG3-0011-R1a-SM-7LG6H
30-39 years, female
340.7
GTEX-13FTY-0011-R1a-SM-5LZXE
40-49 years, female
340.1
GTEX-1H3VE-0011-R1a-SM-A9G1K
40-49 years, male
331.2
GTEX-13FHP-0011-R1b-SM-5K7XL
50-59 years, male
329.1
GTEX-1CB4G-0011-R1b-SM-9QEHT
60-69 years, male
324.6
GTEX-1HBPI-0011-R1b-SM-A9SKF
50-59 years, male
322.8
GTEX-17MF6-0011-R1a-SM-72D6O
40-49 years, male
316.3
GTEX-T5JC-0011-R1A-SM-32PM6
20-29 years, male
310.8
GTEX-1B8L1-0011-R1a-SM-7P8SS
60-69 years, male
307.8
GTEX-WZTO-0011-R1B-SM-3NMAR
40-49 years, male
306.6
GTEX-13RTL-0011-R1a-SM-5PNZ8
40-49 years, male
305.2
GTEX-13N2G-0011-R1b-SM-5MR3G
60-69 years, male
304.9
GTEX-144GO-0011-R1a-SM-5PNWO
60-69 years, male
302.6
GTEX-1A8G6-0011-R1a-SM-7P8PC
60-69 years, male
294.2
GTEX-1HSMO-0011-R1a-SM-CM2SV
60-69 years, male
293.0
GTEX-WHSE-0011-R1A-SM-3P5ZK
20-29 years, male
289.6
GTEX-139TT-0011-R1a-SM-5LZVD
60-69 years, male
286.6
GTEX-P44H-0011-R1A-SM-3NM8J
40-49 years, male
283.6
GTEX-1B933-0011-R1b-SM-9QEGW
50-59 years, female
282.6
GTEX-1B8SF-0011-R1b-SM-7P8Q8
60-69 years, male
282.1
GTEX-132Q8-0011-R1a-SM-5EGLK
60-69 years, male
278.5
GTEX-12WSE-0011-R1b-SM-5GU4V
20-29 years, male
275.1
GTEX-1GN73-0011-R1a-SM-CKZNT
60-69 years, male
273.9
GTEX-17HHY-0011-R1a-SM-7189V
50-59 years, male
271.5
GTEX-17HII-0011-R1b-SM-7MGVW
50-59 years, male
269.1
GTEX-YFC4-0011-R1a-SM-4V6EH
40-49 years, female
260.2
GTEX-11WQC-0011-R1b-SM-DO932
60-69 years, male
258.7
GTEX-1C64N-0011-R1b-SM-7P8Q7
50-59 years, male
258.4
GTEX-1F48J-0011-R1a-SM-9QEIC
50-59 years, female
255.9
GTEX-13112-0011-R1b-SM-5HL7K
50-59 years, male
251.9
GTEX-ZE7O-0011-R1a-SM-57WDM
50-59 years, female
251.8
GTEX-1F6I4-0011-R1a-SM-9OSWU
60-69 years, male
248.7
GTEX-14ABY-0011-R1a-SM-6EU2W
50-59 years, male
248.1
GTEX-13JUV-0011-R1a-SM-5LZY4
40-49 years, female
246.6
GTEX-1GF9W-0011-R1a-SM-9QEIQ
60-69 years, male
246.1
GTEX-1LB8K-0011-R1b-SM-EZ6MV
50-59 years, male
245.2
GTEX-12ZZX-0011-R1a-SM-5EQ6B
40-49 years, female
244.0
GTEX-1GN1U-0011-R1a-SM-CJI25
50-59 years, female
243.9
GTEX-N7MS-0011-R1a-SM-2HMJG
60-69 years, male
242.8
GTEX-1B996-0011-R1b-SM-7P8PO
60-69 years, male
241.9
GTEX-13SLW-0011-R1a-SM-5S2W7
70-79 years, male
240.4
GTEX-13O3O-0011-R1b-SM-5KM2K
60-69 years, female
238.4
GTEX-WL46-0011-R1A-SM-3LK6M
50-59 years, male
237.9
GTEX-1GTWX-0011-R1a-SM-CE6RL
60-69 years, male
236.7
GTEX-1A3MX-0011-R1b-SM-7P8PH
60-69 years, male
236.4
GTEX-131YS-0011-R1a-SM-5DUXC
60-69 years, female
233.7
GTEX-18A6Q-0011-R1b-SM-731DI
60-69 years, male
233.4
GTEX-1EMGI-0011-R1b-SM-9OSWZ
60-69 years, male
232.7
GTEX-13OW7-0011-R1b-SM-5L3HF
50-59 years, male
231.4
GTEX-1C6VR-0011-R1a-SM-7MXUE
60-69 years, male
230.6
GTEX-131XH-0011-R1a-SM-5DUWA
50-59 years, male
229.6
GTEX-12WSM-0011-R1a-SM-5LZW6
60-69 years, male
228.8
GTEX-17EVP-0011-R1a-SM-7DHLA
40-49 years, male
228.7
GTEX-14ASI-0011-R1b-SM-5S2TY
60-69 years, male
227.9
GTEX-13QIC-0011-R1a-SM-5O9CJ
60-69 years, female
227.6
GTEX-16YQH-0011-R1a-SM-7LT8R
30-39 years, male
227.6
GTEX-13N1W-0011-R1b-SM-5MR4T
70-79 years, male
227.2
GTEX-13NYS-0011-R1b-SM-5MR55
60-69 years, male
222.0
GTEX-1LG7Y-0011-R1a-SM-EYYWV
50-59 years, male
221.7
GTEX-1EH9U-0011-R1b-SM-CJI2B
60-69 years, male
220.2
GTEX-13OW6-0011-R1a-SM-5L3HQ
50-59 years, male
219.6
GTEX-13S7M-0011-R1b-SM-5PNZE
60-69 years, female
219.6
GTEX-1HR98-0011-R1a-SM-ARZLQ
60-69 years, male
218.1
GTEX-ZUA1-0011-R1a-SM-4YCE2
40-49 years, male
215.2
GTEX-1EX96-0011-R1a-SM-CE6R5
50-59 years, male
214.3
GTEX-1GN2E-0011-R1b-SM-CE6RJ
60-69 years, male
213.5
GTEX-PVOW-0011-R1A-SM-32PL6
40-49 years, male
212.4
GTEX-1AX9I-0011-R1b-SM-7RHG2
60-69 years, male
212.2
GTEX-1J1OQ-0011-R1a-SM-A9G1Z
40-49 years, female
205.6
GTEX-1E1VI-0011-R1a-SM-ARZMM
50-59 years, male
205.1
GTEX-14JIY-0011-R1a-SM-68713
60-69 years, male
204.6
GTEX-1I1GQ-0011-R1a-SM-CY8GG
50-59 years, male
203.3
GTEX-15ER7-0011-R1b-SM-7KUE1
20-29 years, female
203.2
GTEX-Y8DK-0011-R1A-SM-4RGLO
60-69 years, male
202.9
GTEX-13NYB-0011-R1b-SM-5KM4F
40-49 years, male
200.5
GTEX-145MH-0011-R1b-SM-5PNWY
50-59 years, male
200.4
GTEX-P44G-0011-R1A-SM-2I3FE
30-39 years, male
199.5
GTEX-1313W-0011-R1b-SM-5EQ4A
50-59 years, female
198.9
GTEX-15CHQ-0011-R1a-SM-COH27
60-69 years, male
198.3
GTEX-1IDJH-0011-R1b-SM-ARU6U
70-79 years, male
197.9
GTEX-X4XX-0011-R1B-SM-3P622
60-69 years, male
197.0
GTEX-17F97-0011-R1b-SM-7IGM9
50-59 years, male
196.2
GTEX-S7SE-0011-R1A-SM-2XCDE
50-59 years, male
196.0
GTEX-13OW5-0011-R1b-SM-5L3GE
60-69 years, male
195.1
GTEX-R55E-0011-R1A-SM-2TC6N
20-29 years, male
194.0
GTEX-16XZZ-0011-R1a-SM-7LTAH
60-69 years, male
193.9
GTEX-145LU-0011-R1a-SM-5Q5CE
50-59 years, male
193.4
GTEX-ZDXO-0011-R1a-SM-4WKF4
60-69 years, male
192.8
GTEX-13OVL-0011-R1a-SM-5L3H5
50-59 years, male
191.7
GTEX-1I1GS-0011-R1a-SM-CJI43
60-69 years, male
191.6
GTEX-1H1CY-0011-R1a-SM-CKZOZ
60-69 years, female
191.2
GTEX-YJ89-0011-R1a-SM-4RGLS
60-69 years, male
189.9
GTEX-14E6D-0011-R1b-SM-5YYAW
50-59 years, male
189.8
GTEX-14PJM-0011-R1a-SM-CNPO3
50-59 years, female
189.6
GTEX-1H4P4-0011-R1b-SM-CL54V
50-59 years, male
189.4
GTEX-11GS4-0011-R1a-SM-DO129
60-69 years, male
187.9
GTEX-1IY9M-0011-R1a-SM-EXURZ
60-69 years, male
185.2
GTEX-1J8Q2-0011-R1a-SM-D4P2D
60-69 years, male
182.9
GTEX-1HGF4-0011-R1a-SM-CJI3S
60-69 years, male
182.5
GTEX-1CAV2-0011-R1a-SM-ARZML
40-49 years, female
182.1
GTEX-1EKGG-0011-R1b-SM-9QEI1
60-69 years, male
181.4
GTEX-13CF2-0011-R1a-SM-5LZY1
60-69 years, male
180.8
GTEX-QVJO-0011-R1A-SM-2S1QI
60-69 years, female
180.5
GTEX-X585-0011-R1B-SM-46MVE
50-59 years, male
180.4
GTEX-1399T-0011-R1b-SM-5DUWN
60-69 years, male
180.3
GTEX-1E2YA-0011-R1b-SM-CJI29
50-59 years, male
180.1
GTEX-WWYW-0011-R1A-SM-3TW8G
50-59 years, female
178.6
GTEX-1GF9V-0011-R1a-SM-CKZNQ
60-69 years, male
176.9
GTEX-RNOR-0011-R1A-SM-CNNP5
50-59 years, female
175.4
GTEX-12WSD-0011-R1b-SM-5LZVY
60-69 years, female
175.3
GTEX-OHPN-0011-R1A-SM-2I5GB
60-69 years, female
174.9
GTEX-15UF6-0011-R1a-SM-9QEGH
70-79 years, female
174.5
GTEX-15DCD-0011-R1b-SM-6LPIJ
70-79 years, female
173.7
GTEX-TSE9-0011-R1A-SM-3DB7E
60-69 years, female
173.6
GTEX-13QJC-0011-R1b-SM-5S2UU
60-69 years, female
173.2
GTEX-16Z82-0011-R1b-SM-7EPHZ
60-69 years, male
173.1
GTEX-1H1ZS-0011-R1b-SM-A9G1E
70-79 years, male
172.5
GTEX-14LZ3-0011-R1a-SM-69LP5
60-69 years, female
169.8
GTEX-13OVJ-0011-R1b-SM-5L3I6
50-59 years, female
169.3
GTEX-1C6VQ-0011-R1a-SM-7P8Q2
50-59 years, male
165.9
GTEX-14C5O-0011-R1b-SM-6AJBW
60-69 years, male
165.3
GTEX-ZAB4-0011-R1a-SM-4RGNO
40-49 years, male
164.4
GTEX-1H1DG-0011-R1b-SM-CKZP1
70-79 years, male
163.1
GTEX-12WSH-0011-R1a-SM-5GU5V
50-59 years, male
162.2
GTEX-13FHO-0011-R1b-SM-5KLZG
60-69 years, male
162.1
GTEX-17EVQ-0011-R1a-SM-7189S
70-79 years, male
161.9
GTEX-ZVZQ-0011-R1a-SM-57WBU
60-69 years, female
161.0
GTEX-1H23P-0011-R1a-SM-ACKVC
60-69 years, male
160.8
GTEX-12WSF-0011-R1a-SM-5DUVI
70-79 years, male
159.7
GTEX-1HSKV-0011-R1b-SM-CMKH7
60-69 years, male
158.7
GTEX-11UD1-0011-R1b-SM-5BC7D
40-49 years, female
157.6
GTEX-13G51-0011-R1a-SM-5LZYR
60-69 years, male
157.0
GTEX-13X6I-0011-R1b-SM-5PNZC
60-69 years, male
154.2
GTEX-NL3H-0011-R1a-SM-48TDJ
60-69 years, male
154.1
GTEX-N7MT-0011-R1a-SM-CNPO1
60-69 years, female
153.5
GTEX-T6MN-0011-R1A-SM-32QOY
50-59 years, male
152.7
GTEX-139T8-0011-R1a-SM-5HL75
60-69 years, male
151.7
GTEX-11TUW-0011-R1a-SM-DO92S
60-69 years, male
151.0
GTEX-1H3NZ-0011-R1a-SM-CKZP5
60-69 years, male
151.0
GTEX-NPJ7-0011-R1a-SM-3GACT
60-69 years, female
150.1
GTEX-1212Z-0011-R1b-SM-5BC72
60-69 years, male
149.5
GTEX-16NPV-0011-R1b-SM-7MGVZ
50-59 years, female
149.3
GTEX-11GSO-0011-R1b-SM-57WD3
60-69 years, male
148.6
GTEX-14PJO-0011-R1b-SM-6AJAK
60-69 years, male
148.6
GTEX-11GSP-0011-R1a-SM-9QEJ3
60-69 years, female
148.5
GTEX-1CB4J-0011-R1a-SM-9WG64
60-69 years, male
148.1
GTEX-11ONC-0011-R1a-SM-57WD4
60-69 years, male
147.7
GTEX-13JVG-0011-R1a-SM-5KM32
60-69 years, male
147.4
GTEX-13NZA-0011-R1b-SM-5LUAF
60-69 years, male
147.0
GTEX-ZF28-0011-R1a-SM-4WWD1
60-69 years, male
146.0
GTEX-14PQA-0011-R1b-SM-6EU1G
50-59 years, female
144.6
GTEX-1I1GV-0011-R1a-SM-CL559
60-69 years, male
144.4
GTEX-1H3O1-0011-R1b-SM-CL554
60-69 years, male
143.9
GTEX-1F6IF-0011-R1b-SM-9WG78
60-69 years, male
142.6
GTEX-13RTJ-0011-R1a-SM-5O9D9
60-69 years, male
139.4
GTEX-1F75W-0011-R1a-SM-ARU81
60-69 years, male
138.7
GTEX-QDT8-0011-R1A-SM-32PKS
30-39 years, female
136.9
GTEX-1I1HK-0011-R1b-SM-CM2T7
60-69 years, male
136.0
GTEX-14BIM-0011-R1a-SM-69LQI
60-69 years, female
135.3
GTEX-145LS-0011-R1b-SM-5PNUP
60-69 years, female
132.6
GTEX-1BAJH-0011-R1a-SM-7P8SV
70-79 years, male
131.2
GTEX-1ICLZ-0011-R1b-SM-A9SM3
60-69 years, male
130.8
GTEX-QMR6-0011-R1A-SM-32PKW
50-59 years, male
130.5
GTEX-16GPK-0011-R1b-SM-7EWDH
60-69 years, male
129.2
GTEX-1A32A-0011-R1a-SM-7P8SQ
50-59 years, female
128.2
GTEX-14LLW-0011-R1a-SM-5ZZVD
70-79 years, female
127.5
GTEX-183WM-0011-R1a-SM-718A8
70-79 years, female
126.8
GTEX-XMD1-0011-R1A-SM-4AT4C
60-69 years, male
123.3
GTEX-14E7W-0011-R1b-SM-5YYAT
70-79 years, male
117.5
GTEX-1EWIQ-0011-R1a-SM-9OSX7
70-79 years, female
113.8
GTEX-11ZVC-0011-R1b-SM-5BC6M
50-59 years, female
112.5
GTEX-11ZTS-0011-R1a-SM-5BC71
60-69 years, female
105.0
GTEX-13NZ8-0011-R1b-SM-5KM3V
60-69 years, female
102.9
GTEX-UTHO-0011-R1A-SM-3GIJO
60-69 years, male
102.2
GTEX-13OW8-0011-R1a-SM-5L3HI
60-69 years, male
97.2
GTEX-PWO3-0011-R1A-SM-2I5EW
60-69 years, female
93.9
GTEX-1GZHY-0011-R1a-SM-CE6RR
50-59 years, female
87.9
GTEX-QVUS-0011-R1A-SM-3GAD2
60-69 years, female
78.7
GTEX-NPJ8-0011-R1a-SM-33HCB
40-49 years, male
70.7
GTEX-X4EP-0011-R1A-SM-3P624
60-69 years, female
35.7
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
170.1
Mouse sample
Sample description
nTPM
Entorhinal cortex nTPM: 152.7
Samples: 4
Max nTPM: 160.0
Min nTPM: 143.8
Sample A
Male
160.0
Sample B
Male
156.3
Sample C
Female
150.5
Sample D
Female
143.8
Hippocampal formation nTPM: 170.1
Samples: 4
Max nTPM: 179.2
Min nTPM: 162.9
Sample A
Male
166.4
Sample B
Male
162.9
Sample C
Female
179.2
Sample D
Female
171.8
HIPPOCAMPAL FORMATION - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.