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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
88.3
nTPM
HPA Brain:
84.9
nTPM
GTEx:
88.3
nTPM
FANTOM5:
129.3
Scaled Tags Per Million
Pig:
55.5
nTPM
Mouse:
92.5
nTPM
Allen mouse:
4.9
Expression energy
MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
84.9
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 75.5
2019
Male, age 18, unknown
81.9
1830
Male, age 51, unknown
80.9
1833
Male, age 53, unknown
80.5
2411
Female, age 72, unknown
79.8
1827
Male, age 72, unknown
77.1
1870
Female, age 42, unknown
76.8
2828
Female, age 72, unknown
72.3
2666
Male, age 74, left hemisphere
69.7
2586
Male, age 75, left hemisphere
68.4
2219
Male, age 76, both hemispheres
67.9
Dorsal raphe nucleus nTPM: 71.3
2016
Female, age 72, unknown
75.9
1828
Male, age 53, unknown
74.7
2750
Male, age 76, both hemispheres
74.5
2047
Male, age 72, unknown
67.0
2298
Female, age 72, unknown
64.3
Inferior colliculus nTPM: 74.3
1890
Male, age 53, unknown
77.3
2849
Male, age 72, unknown
75.5
2097
Female, age 72, unknown
72.9
1848
Female, age 42, unknown
71.6
Median raphe nucleus nTPM: 66.9
2220
Male, age 76, midline
66.9
Periaquaductal grey, anterior nTPM: 72.7
2502
Female, age 75, unknown
79.2
1947
Male, age 18, unknown
74.4
1795
Male, age 51, unknown
64.4
Periaquaductal grey, dorsal nTPM: 76.8
2850
Male, age 76, both hemispheres
85.4
1831
Male, age 72, unknown
75.8
1840
Male, age 53, unknown
73.1
2464
Female, age 72, unknown
72.9
Periaquaductal grey, lateral nTPM: 71.6
2140
Male, age 76, both hemispheres
80.4
2053
Male, age 18, unknown
67.6
2272
Male, age 74, both hemispheres
66.8
Pretectal area nTPM: 75.3
2407
Male, age 75, both hemispheres
82.3
1815
Male, age 53, unknown
81.1
1817
Female, age 42, unknown
81.1
1816
Male, age 51, unknown
80.4
2007
Male, age 72, unknown
79.2
1944
Female, age 72, unknown
76.4
2316
Male, age 76, right hemisphere
75.3
2825
Male, age 18, unknown
73.7
2273
Male, age 74, both hemispheres
70.3
2224
Female, age 72, unknown
65.5
2667
Female, age 75, unknown
63.3
Red nucleus nTPM: 84.9
2503
Female, age 72, unknown
93.9
1904
Male, age 53, unknown
91.3
1865
Male, age 51, unknown
90.5
1821
Female, age 72, unknown
88.3
2823
Male, age 76, right hemisphere
88.1
2588
Male, age 74, left hemisphere
84.9
1954
Female, age 42, unknown
83.5
2785
Male, age 18, unknown
82.4
2227
Male, age 72, unknown
81.6
2769
Male, age 72, unknown
80.1
2725
Female, age 75, unknown
78.1
2584
Male, age 75, left hemisphere
75.8
Substantia nigra nTPM: 76.9
2590
Female, age 75, unknown
84.4
2409
Female, age 72, unknown
80.8
2583
Male, age 75, right hemisphere
80.7
2699
Male, age 18, unknown
78.6
2665
Male, age 74, both hemispheres
78.1
2241
Male, age 72, unknown
76.8
1851
Male, age 51, unknown
74.6
1916
Female, age 42, unknown
74.2
1889
Female, age 72, unknown
72.9
1941
Male, age 53, unknown
67.8
Superior colliculus nTPM: 75.8
1913
Female, age 42, unknown
81.8
1995
Male, age 72, unknown
81.2
2668
Female, age 75, unknown
80.7
1895
Male, age 76, right hemisphere
80.1
2587
Male, age 74, left hemisphere
79.0
2087
Female, age 72, unknown
74.3
2261
Male, age 18, unknown
73.0
1839
Male, age 51, unknown
72.9
1796
Male, age 53, unknown
68.0
2664
Male, age 75, both hemispheres
66.9
Ventral tegmental area nTPM: 71.1
2223
Female, age 72, unknown
76.9
2410
Female, age 72, unknown
76.0
1942
Male, age 51, unknown
69.4
2021
Male, age 53, unknown
68.9
1915
Female, age 42, unknown
68.4
2218
Male, age 76, both hemispheres
67.2
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
88.3
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 88.3
Samples: 139
Max nTPM: 144.9
Min nTPM: 56.9
Std nTPM: 18.8
Median nTPM: 83.2
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
144.9
GTEX-1IKOH-0011-R2a-SM-CMKHO
60-69 years, female
133.9
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
133.4
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
133.0
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
131.3
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
130.8
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
130.3
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
127.3
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
123.7
GTEX-OXRO-0011-R2A-SM-3NB1W
60-69 years, female
121.6
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
118.9
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
118.3
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
117.8
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
116.4
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
116.4
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
116.0
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
114.3
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
111.9
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
111.1
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
110.5
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
110.3
GTEX-N7MT-0011-R2a-SM-2I3GI
60-69 years, female
108.5
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
108.5
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
107.1
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
105.7
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
102.4
GTEX-NL4W-0011-R2a-SM-2I5GV
50-59 years, male
102.3
GTEX-T5JC-0011-R2A-SM-32PLZ
20-29 years, male
102.1
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
101.8
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
100.8
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
100.6
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
100.5
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
100.5
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
100.1
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
100.0
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
100.0
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
98.4
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
98.3
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
98.1
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
98.0
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
97.9
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
96.6
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
96.3
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
96.1
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
95.2
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
93.6
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
92.6
GTEX-NPJ8-0011-R2a-SM-2TC6M
40-49 years, male
92.6
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
92.4
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
92.4
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
92.2
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
91.3
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
91.1
GTEX-18464-0011-R2a-SM-731AL
50-59 years, male
90.1
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
89.5
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
89.3
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
89.1
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
88.4
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
87.6
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
87.4
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
87.2
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
87.2
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
86.8
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
85.9
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
85.7
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
85.4
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
84.5
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
83.7
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
83.5
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
83.2
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
83.1
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
83.0
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
82.3
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
82.3
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
82.2
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
82.1
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
82.1
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
81.8
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
81.8
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
81.7
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
81.5
GTEX-PWO3-0011-R2A-SM-2S1OX
60-69 years, female
81.5
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
81.3
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
81.0
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
81.0
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
81.0
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
80.7
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
80.4
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
80.4
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
79.3
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
78.7
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
77.6
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
77.5
GTEX-P44G-0011-R2A-SM-2XCD2
30-39 years, male
77.2
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
77.1
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
76.9
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
76.9
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
76.6
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
76.5
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
76.3
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
75.9
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
75.8
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
75.4
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
75.4
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
75.1
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
74.8
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
74.6
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
74.2
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
73.7
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
72.5
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
71.7
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
70.6
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
70.3
GTEX-N7MS-0011-R2a-SM-2HML6
60-69 years, male
70.1
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
69.9
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
69.6
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
69.0
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
68.8
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
68.6
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
68.5
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
68.5
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
67.8
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
67.8
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
67.3
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
67.0
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
67.0
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
66.5
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
66.1
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
65.9
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
65.5
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
64.8
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
63.6
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
63.4
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
63.3
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
61.6
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
59.3
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
59.2
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
58.4
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
56.9
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MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
92.5
Mouse sample
Sample description
nTPM
Midbrain nTPM: 92.6
Samples: 4
Max nTPM: 98.6
Min nTPM: 83.2
Sample A
Male
83.2
Sample B
Male
91.2
Sample C
Female
97.2
Sample D
Female
98.6
MIDBRAIN - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.