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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
h
m
l
n
Ganglion cells :
Not detected
Inner nuclear layer:
Not detected
Inner plexiform layer:
Not detected
Limiting membrane:
Not detected
Nerve fiber layer:
Not detected
Outer plexiform layer:
Not detected
Photoreceptor cells:
Medium
Pigment epithelial cells:
Not detected
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
373.6
nTPM
GTEx:
373.6
nTPM
FANTOM5:
85.2
Scaled Tags Per Million
Pig:
431.6
nTPM
Mouse:
222.4
nTPM
RETINA - Extended tissue profilei
For selected proteins extended tissue profiling is performed in addition to standard tissue microarrays. The section below contains results from the extended profiling.
, antibody HPA063129
Pigment epithelial cells
Not detected
Immunohistochemical staining of human retina shows strong positivity in cones
100 ฮผm
Photoreceptor cells
Medium
Limiting membrane
Not detected
Outer plexiform layer
Not detected
Inner nuclear layer
Not detected
Inner plexiform layer
Not detected
Ganglion cells
Not detected
Nerve fiber layer
Not detected
RETINA - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
373.6
GTEx sample id
Sample description
nTPM
Retina Average nTPM: 373.6
Samples: 105
Max nTPM: 653.5
Min nTPM: 85.4
Std nTPM: 104.6
Median nTPM:
386_1
76 years, male
653.5
350_1
84 years, female
612.1
163_1
78 years, male
570.2
379_1
60 years, male
566.1
319_1
81 years, male
560.5
243_1
75 years, male
554.6
246_1
77 years, male
542.8
389_1
86 years, female
542.7
351_1
91 years, male
535.4
377_1
82 years, female
528.4
349_1
83 years, male
520.3
4_1
88 years, female
507.6
384_1
83 years, male
497.2
173_1
67 years, male
494.7
425_1
59 years, female
486.5
406_1
79 years, male
484.8
6_1
73 years, female
476.1
447_1
81 years, male
473.0
177_1
74 years, male
470.6
352_1
62 years, male
466.6
375_1
74 years, female
466.1
321_1
62 years, female
464.8
347_1
72 years, male
463.7
356_1
87 years, female
447.5
229_1
69 years, female
436.1
318_1
68 years, male
426.2
18_1
88 years, male
421.3
292_1
71 years, male
421.1
217_1
76 years, male
418.3
468_1
89 years, male
414.3
218_1
71 years, female
414.1
354_1
81 years, female
411.4
452_1
88 years, female
407.6
189_1
76 years, male
407.1
139_1
64 years, female
406.7
376_1
75 years, female
406.4
254_1
77 years, female
406.2
335_1
73 years, female
404.8
35_1
74 years, female
403.8
153_1
70 years, female
403.3
355_1
70 years, female
394.8
99_1
64 years, male
394.4
394_1
75 years, female
392.2
322_1
76 years, male
391.6
396_1
62 years, male
391.6
404_1
82 years, female
391.5
115_1
83 years, male
391.4
503_1
68 years, male
390.8
9_1
66 years, female
390.4
172_1
72 years, female
389.0
265_1
87 years, male
387.5
295_1
61 years, female
386.8
109_1
81 years, female
385.3
517_1
88 years, male
384.0
120_1
70 years, female
375.1
237_1
82 years, male
374.8
2_1
77 years, female
373.8
17_1
71 years, male
364.5
286_1
68 years, female
364.2
526_1
61 years, male
363.1
251_1
78 years, male
361.6
311_1
78 years, male
357.3
264_1
73 years, female
354.8
315_1
62 years, female
354.1
506_1
65 years, male
350.0
414_1
84 years, female
347.3
126_1
63 years, male
339.0
266_1
85 years, male
338.2
348_1
84 years, male
335.7
162_1
79 years, female
329.3
137_1
83 years, male
329.0
293_1
68 years, female
323.9
413_1
59 years, female
318.3
89_1
63 years, male
312.3
316_1
62 years, male
312.1
480_1
63 years, male
305.8
324_1
76 years, male
304.9
142_1
61 years, female
303.0
518_1
75 years, female
301.8
317_1
60 years, male
301.6
119_1
70 years, female
298.8
314_1
67 years, male
296.8
320_1
89 years, female
290.4
405_1
91 years, male
288.3
291_1
76 years, male
288.1
42_1
85 years, male
283.8
313_1
79 years, female
279.9
353_1
82 years, female
277.9
43_1
64 years, female
272.4
117_1
61 years, male
271.9
81_1
67 years, male
263.0
415_1
77 years, female
261.3
145_1
84 years, male
257.9
501_1
88 years, male
245.0
149_1
88 years, male
228.8
466_1
57 years, female
223.4
499_1
55 years, female
222.5
288_1
66 years, female
213.8
32_1
67 years, male
213.4
41_1
94 years, female
211.9
490_1
67 years, female
205.5
491_1
89 years, female
197.0
307_1
66 years, female
171.4
308_1
70 years, female
129.2
495_1
57 years, female
85.4
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RETINA - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.