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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
12.4
nTPM
HPA Brain:
40.6
nTPM
GTEx:
12.4
nTPM
FANTOM5:
74.5
Scaled Tags Per Million
Pig:
49.1
nTPM
Mouse:
4.4
nTPM
Allen mouse:
0.1
Expression energy
MIDBRAIN - Annotated protein expression
Pending normal tissue analysis
MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
40.6
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 33.2
2019
Male, age 18, unknown
50.3
1830
Male, age 51, unknown
40.7
1833
Male, age 53, unknown
37.8
1870
Female, age 42, unknown
37.1
2411
Female, age 72, unknown
36.2
2586
Male, age 75, left hemisphere
30.6
2828
Female, age 72, unknown
28.1
2666
Male, age 74, left hemisphere
28.0
2219
Male, age 76, both hemispheres
21.8
1827
Male, age 72, unknown
21.2
Dorsal raphe nucleus nTPM: 24.9
2750
Male, age 76, both hemispheres
36.7
2016
Female, age 72, unknown
28.0
1828
Male, age 53, unknown
24.8
2047
Male, age 72, unknown
18.3
2298
Female, age 72, unknown
16.8
Inferior colliculus nTPM: 22.4
1890
Male, age 53, unknown
27.1
1848
Female, age 42, unknown
21.0
2097
Female, age 72, unknown
20.8
2849
Male, age 72, unknown
20.7
Median raphe nucleus nTPM: 27.1
2220
Male, age 76, midline
27.1
Periaquaductal grey, anterior nTPM: 22.2
2502
Female, age 75, unknown
31.5
1947
Male, age 18, unknown
19.4
1795
Male, age 51, unknown
15.7
Periaquaductal grey, dorsal nTPM: 23.3
2850
Male, age 76, both hemispheres
30.1
2464
Female, age 72, unknown
25.2
1831
Male, age 72, unknown
22.9
1840
Male, age 53, unknown
15.0
Periaquaductal grey, lateral nTPM: 25.4
2140
Male, age 76, both hemispheres
31.6
2272
Male, age 74, both hemispheres
22.7
2053
Male, age 18, unknown
21.8
Pretectal area nTPM: 27.1
1815
Male, age 53, unknown
41.4
2007
Male, age 72, unknown
37.8
1817
Female, age 42, unknown
33.9
2316
Male, age 76, right hemisphere
27.3
2273
Male, age 74, both hemispheres
25.5
2407
Male, age 75, both hemispheres
24.6
1944
Female, age 72, unknown
24.2
2667
Female, age 75, unknown
24.0
1816
Male, age 51, unknown
20.7
2825
Male, age 18, unknown
19.9
2224
Female, age 72, unknown
18.7
Red nucleus nTPM: 40.6
2785
Male, age 18, unknown
55.0
1865
Male, age 51, unknown
51.5
1904
Male, age 53, unknown
46.9
1821
Female, age 72, unknown
45.9
2227
Male, age 72, unknown
43.1
2769
Male, age 72, unknown
42.8
1954
Female, age 42, unknown
40.1
2823
Male, age 76, right hemisphere
36.7
2503
Female, age 72, unknown
36.0
2584
Male, age 75, left hemisphere
33.2
2588
Male, age 74, left hemisphere
32.9
2725
Female, age 75, unknown
22.9
Substantia nigra nTPM: 28.2
2590
Female, age 75, unknown
36.3
2583
Male, age 75, right hemisphere
34.8
2409
Female, age 72, unknown
32.7
1889
Female, age 72, unknown
32.2
1851
Male, age 51, unknown
31.0
2699
Male, age 18, unknown
25.9
1941
Male, age 53, unknown
22.7
2241
Male, age 72, unknown
22.7
2665
Male, age 74, both hemispheres
22.1
1916
Female, age 42, unknown
21.2
Superior colliculus nTPM: 27.8
1995
Male, age 72, unknown
40.8
1913
Female, age 42, unknown
38.9
2587
Male, age 74, left hemisphere
28.5
1895
Male, age 76, right hemisphere
27.3
1839
Male, age 51, unknown
27.2
2668
Female, age 75, unknown
26.5
2087
Female, age 72, unknown
24.6
2261
Male, age 18, unknown
21.8
2664
Male, age 75, both hemispheres
21.5
1796
Male, age 53, unknown
20.8
Ventral tegmental area nTPM: 29.6
2223
Female, age 72, unknown
43.1
2410
Female, age 72, unknown
34.7
2218
Male, age 76, both hemispheres
26.9
1942
Male, age 51, unknown
26.5
2021
Male, age 53, unknown
24.6
1915
Female, age 42, unknown
22.0
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
12.4
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 12.4
Samples: 139
Max nTPM: 27.8
Min nTPM: 4.2
Std nTPM: 4.8
Median nTPM: 11.4
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
27.8
GTEX-N7MT-0011-R2a-SM-2I3GI
60-69 years, female
25.5
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
24.6
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
24.0
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
23.9
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
23.7
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
23.6
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
23.2
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
22.6
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
22.3
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
22.0
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
20.0
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
19.6
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
19.5
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
19.5
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
19.4
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
18.9
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
18.6
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
18.5
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
18.2
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
17.5
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
17.3
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
17.3
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
17.3
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
16.5
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
16.5
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
16.3
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
16.3
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
15.5
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
15.3
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
15.0
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
14.8
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
14.7
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
14.7
GTEX-P44G-0011-R2A-SM-2XCD2
30-39 years, male
14.5
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
14.4
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
14.3
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
13.9
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
13.8
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
13.7
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
13.6
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
13.4
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
13.4
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
13.2
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
13.2
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
13.1
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
12.9
GTEX-18464-0011-R2a-SM-731AL
50-59 years, male
12.7
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
12.6
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
12.5
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
12.5
GTEX-N7MS-0011-R2a-SM-2HML6
60-69 years, male
12.5
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
12.3
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
12.2
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
12.1
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
12.1
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
12.1
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
12.0
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
12.0
GTEX-T5JC-0011-R2A-SM-32PLZ
20-29 years, male
12.0
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
12.0
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
11.9
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
11.9
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
11.7
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
11.6
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
11.5
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
11.5
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
11.4
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
11.4
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
11.4
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
11.4
GTEX-NL4W-0011-R2a-SM-2I5GV
50-59 years, male
11.2
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
11.2
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
10.9
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
10.8
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
10.8
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
10.8
GTEX-OXRO-0011-R2A-SM-3NB1W
60-69 years, female
10.8
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
10.6
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
10.4
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
10.4
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
10.2
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
10.2
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
10.2
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
10.2
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
10.1
GTEX-1IKOH-0011-R2a-SM-CMKHO
60-69 years, female
10.1
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
10.0
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
10.0
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
9.9
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
9.9
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
9.8
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
9.5
GTEX-NPJ8-0011-R2a-SM-2TC6M
40-49 years, male
9.4
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
9.4
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
9.3
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
9.3
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
9.3
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
9.2
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
9.2
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
9.1
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
9.1
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
9.0
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
8.9
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
8.8
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
8.7
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
8.7
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
8.6
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
8.6
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
8.5
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
8.5
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
8.5
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
8.5
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
8.4
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
8.3
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
8.2
GTEX-PWO3-0011-R2A-SM-2S1OX
60-69 years, female
8.0
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
8.0
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
7.9
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
7.9
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
7.8
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
7.8
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
7.8
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
7.6
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
7.6
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
7.4
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
7.4
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
7.4
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
7.3
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
7.3
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
7.2
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
6.9
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
6.7
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
6.6
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
6.2
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
5.8
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
5.7
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
5.6
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
4.2
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MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
4.4
Mouse sample
Sample description
nTPM
Midbrain nTPM: 4.4
Samples: 4
Max nTPM: 4.8
Min nTPM: 3.8
Sample A
Male
3.8
Sample B
Male
4.2
Sample C
Female
4.7
Sample D
Female
4.8
MIDBRAIN - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.