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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
96.2
nTPM
HPA Brain:
102.6
nTPM
GTEx:
96.2
nTPM
FANTOM5:
315.5
Scaled Tags Per Million
Pig:
133.1
nTPM
Mouse:
14.5
nTPM
Allen mouse:
2.1
Expression energy
MIDBRAIN - Annotated protein expression
Pending normal tissue analysis
MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
102.6
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 81.3
2019
Male, age 18, unknown
181.9
2219
Male, age 76, both hemispheres
115.7
2666
Male, age 74, left hemisphere
99.8
1827
Male, age 72, unknown
70.9
2411
Female, age 72, unknown
68.3
1833
Male, age 53, unknown
67.2
2828
Female, age 72, unknown
65.7
1870
Female, age 42, unknown
49.3
1830
Male, age 51, unknown
47.9
2586
Male, age 75, left hemisphere
46.7
Dorsal raphe nucleus nTPM: 80.4
2298
Female, age 72, unknown
143.9
2016
Female, age 72, unknown
95.2
1828
Male, age 53, unknown
74.9
2750
Male, age 76, both hemispheres
50.3
2047
Male, age 72, unknown
37.9
Inferior colliculus nTPM: 56.6
2097
Female, age 72, unknown
84.4
1890
Male, age 53, unknown
77.4
2849
Male, age 72, unknown
33.8
1848
Female, age 42, unknown
30.8
Median raphe nucleus nTPM: 64.5
2220
Male, age 76, midline
64.5
Periaquaductal grey, anterior nTPM: 102.6
1795
Male, age 51, unknown
182.7
2502
Female, age 75, unknown
78.9
1947
Male, age 18, unknown
46.2
Periaquaductal grey, dorsal nTPM: 87.6
1831
Male, age 72, unknown
152.7
2850
Male, age 76, both hemispheres
83.4
2464
Female, age 72, unknown
67.1
1840
Male, age 53, unknown
47.3
Periaquaductal grey, lateral nTPM: 100.6
2272
Male, age 74, both hemispheres
143.5
2140
Male, age 76, both hemispheres
96.5
2053
Male, age 18, unknown
61.7
Pretectal area nTPM: 100.9
1817
Female, age 42, unknown
185.1
2007
Male, age 72, unknown
172.5
1816
Male, age 51, unknown
145.1
2224
Female, age 72, unknown
121.4
2273
Male, age 74, both hemispheres
119.2
1815
Male, age 53, unknown
86.8
1944
Female, age 72, unknown
74.9
2667
Female, age 75, unknown
66.1
2316
Male, age 76, right hemisphere
59.2
2407
Male, age 75, both hemispheres
44.1
2825
Male, age 18, unknown
35.2
Red nucleus nTPM: 75.0
2785
Male, age 18, unknown
201.2
1904
Male, age 53, unknown
94.1
2588
Male, age 74, left hemisphere
83.4
1821
Female, age 72, unknown
72.5
2503
Female, age 72, unknown
68.5
2725
Female, age 75, unknown
62.4
2227
Male, age 72, unknown
60.2
2769
Male, age 72, unknown
59.6
2584
Male, age 75, left hemisphere
55.3
1865
Male, age 51, unknown
50.1
1954
Female, age 42, unknown
49.2
2823
Male, age 76, right hemisphere
42.9
Substantia nigra nTPM: 59.0
2665
Male, age 74, both hemispheres
88.6
2590
Female, age 75, unknown
85.6
1889
Female, age 72, unknown
78.5
1851
Male, age 51, unknown
66.0
2583
Male, age 75, right hemisphere
65.9
1941
Male, age 53, unknown
54.6
2699
Male, age 18, unknown
41.5
1916
Female, age 42, unknown
38.2
2409
Female, age 72, unknown
38.1
2241
Male, age 72, unknown
33.0
Superior colliculus nTPM: 73.7
1995
Male, age 72, unknown
120.3
1913
Female, age 42, unknown
97.2
2587
Male, age 74, left hemisphere
96.8
2261
Male, age 18, unknown
92.3
2668
Female, age 75, unknown
73.0
2087
Female, age 72, unknown
70.2
1796
Male, age 53, unknown
63.5
2664
Male, age 75, both hemispheres
47.0
1895
Male, age 76, right hemisphere
39.3
1839
Male, age 51, unknown
37.7
Ventral tegmental area nTPM: 62.8
1915
Female, age 42, unknown
74.1
2223
Female, age 72, unknown
70.6
2021
Male, age 53, unknown
60.8
1942
Male, age 51, unknown
58.9
2410
Female, age 72, unknown
57.1
2218
Male, age 76, both hemispheres
55.5
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
96.2
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 96.2
Samples: 139
Max nTPM: 301.0
Min nTPM: 16.9
Std nTPM: 50.2
Median nTPM: 84.9
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
301.0
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
223.4
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
215.7
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
200.7
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
195.8
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
189.8
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
189.3
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
187.4
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
186.5
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
182.0
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
179.0
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
178.8
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
178.8
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
175.4
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
163.2
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
159.1
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
159.0
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
157.5
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
156.3
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
155.4
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
152.1
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
149.7
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
148.3
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
147.6
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
147.1
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
144.2
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
144.0
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
143.8
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
142.4
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
133.5
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
132.9
GTEX-T5JC-0011-R2A-SM-32PLZ
20-29 years, male
129.6
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
128.8
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
127.5
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
126.4
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
126.3
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
123.5
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
121.7
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
121.4
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
120.4
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
120.2
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
116.2
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
114.7
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
114.7
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
113.9
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
113.6
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
111.9
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
110.0
GTEX-N7MS-0011-R2a-SM-2HML6
60-69 years, male
109.4
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
105.7
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
103.8
GTEX-OXRO-0011-R2A-SM-3NB1W
60-69 years, female
101.2
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
100.9
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
99.7
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
99.4
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
96.8
GTEX-N7MT-0011-R2a-SM-2I3GI
60-69 years, female
96.4
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
95.4
GTEX-1IKOH-0011-R2a-SM-CMKHO
60-69 years, female
94.7
GTEX-P44G-0011-R2A-SM-2XCD2
30-39 years, male
94.3
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
93.4
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
93.3
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
92.1
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
91.8
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
89.3
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
88.5
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
88.3
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
86.9
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
86.2
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
84.9
GTEX-PWO3-0011-R2A-SM-2S1OX
60-69 years, female
84.6
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
83.4
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
83.3
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
81.1
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
79.9
GTEX-18464-0011-R2a-SM-731AL
50-59 years, male
79.8
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
79.7
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
79.5
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
79.3
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
78.7
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
78.6
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
78.1
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
77.5
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
77.0
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
75.4
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
74.0
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
73.4
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
72.6
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
68.8
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
67.3
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
66.6
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
64.5
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
64.3
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
64.0
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
63.7
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
63.2
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
62.4
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
62.3
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
62.1
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
61.5
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
61.5
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
61.3
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
61.1
GTEX-NPJ8-0011-R2a-SM-2TC6M
40-49 years, male
59.1
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
58.9
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
58.7
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
58.5
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
57.3
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
56.6
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
56.1
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
55.9
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
53.8
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
53.7
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
52.2
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
51.9
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
50.8
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
48.2
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
48.0
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
47.8
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
45.8
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
42.6
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
42.3
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
41.0
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
40.1
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
39.8
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
39.7
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
37.8
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
36.2
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
35.2
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
34.7
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
34.4
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
33.1
GTEX-NL4W-0011-R2a-SM-2I5GV
50-59 years, male
33.0
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
30.2
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
28.3
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
27.0
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
21.7
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
17.2
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
16.9
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MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
14.5
Mouse sample
Sample description
nTPM
Midbrain nTPM: 14.5
Samples: 4
Max nTPM: 15.4
Min nTPM: 12.2
Sample A
Male
15.4
Sample B
Male
15.1
Sample C
Female
12.2
Sample D
Female
15.2
MIDBRAIN - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.