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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
h
m
l
n
Glial cells:
Low
Neuronal cells:
Medium
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
79.6
nTPM
HPA Brain:
109.9
nTPM
GTEx:
79.6
nTPM
FANTOM5:
72.3
Scaled Tags Per Million
Pig:
153.1
nTPM
Mouse:
325.7
nTPM
Allen mouse:
15.8
Expression energy
HIPPOCAMPUS - Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
Antibody HPA064532
Antibody HPA072629
Glial cells
Medium
Low
Neuronal cells
High
Medium
HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
109.9
Sample id
Sample description
nTPM
Hippocampus nTPM: 75.1
1898
Male, age 80, left hemisphere
125.5
2621
Female, age 67, right hemisphere
84.9
1855
Male, age 76, left hemisphere
68.8
2148
Female, age 91, left hemisphere
60.9
2529
Female, age 94, left hemisphere
55.9
1911
Female, age 85, right hemisphere
54.6
Dentate gyrus nTPM: 80.8
1927
Female, age 91, both hemispheres
109.9
2530
Female, age 94, left hemisphere
90.4
2010
Male, age 76, both hemispheres
86.7
2528
Male, age 74, both hemispheres
75.0
2246
Female, age 85, both hemispheres
67.6
2531
Female, age 67, both hemispheres
55.0
Entorhinal gyrus nTPM: 79.5
2764
Male, age 80, right hemisphere
110.2
2613
Female, age 94, left hemisphere
95.5
1938
Female, age 85, left hemisphere
86.6
1787
Male, age 76, left hemisphere
78.1
2686
Male, age 75, right hemisphere
55.8
2117
Female, age 91, right hemisphere
50.8
Hippocampus, CA1 nTPM: 96.1
2749
Male, age 80, left hemisphere
182.6
1873
Female, age 85, both hemispheres
92.1
2527
Male, age 74, both hemispheres
88.5
2082
Female, age 91, right hemisphere
61.1
2045
Male, age 76, both hemispheres
56.1
Hippocampus, CA2 nTPM: 88.7
1963
Male, age 80, left hemisphere
127.0
1892
Male, age 76, both hemispheres
121.4
2249
Male, age 74, both hemispheres
89.6
2437
Female, age 94, left hemisphere
75.4
1940
Female, age 85, left hemisphere
62.9
2113
Female, age 91, right hemisphere
55.8
Hippocampus, CA3 nTPM: 84.6
2436
Male, age 74, both hemispheres
125.6
2137
Male, age 80, left hemisphere
113.6
1867
Male, age 76, both hemispheres
89.4
1891
Female, age 85, both hemispheres
67.9
2620
Female, age 94, left hemisphere
59.4
2861
Female, age 67, both hemispheres
51.5
Parahippocampal cortex nTPM: 83.6
1850
Male, age 80, both hemispheres
117.9
1990
Female, age 91, right hemisphere
110.6
2245
Female, age 91, both hemispheres
92.4
1933
Female, age 85, both hemispheres
88.3
2250
Female, age 67, right hemisphere
86.3
2532
Female, age 72, left hemisphere
84.6
2693
Female, age 94, both hemispheres
77.2
2692
Male, age 74, both hemispheres
63.8
2018
Male, age 76, both hemispheres
59.4
2622
Female, age 67, right hemisphere
55.9
Perirhinal gyrus nTPM: 109.9
1847
Female, age 91, left hemisphere
159.4
1794
Male, age 80, right hemisphere
121.0
1841
Female, age 85, right hemisphere
98.8
2521
Female, age 94, right hemisphere
92.4
2848
Male, age 76, right hemisphere
78.1
Subiculum nTPM: 71.0
1901
Male, age 80, both hemispheres
94.7
1977
Female, age 85, both hemispheres
92.9
2438
Female, age 94, left hemisphere
74.7
2619
Male, age 74, both hemispheres
69.1
2729
Female, age 91, right hemisphere
47.8
2042
Male, age 76, both hemispheres
46.7
HIPPOCAMPAL FORMATION - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
79.6
GTEx sample id
Sample description
nTPM
Brain - Hippocampus Average nTPM: 79.6
Samples: 197
Max nTPM: 232.4
Min nTPM: 19.5
Std nTPM: 46.7
Median nTPM: 65.3
GTEX-13O3O-0011-R1b-SM-5KM2K
60-69 years, female
232.4
GTEX-WHSE-0011-R1A-SM-3P5ZK
20-29 years, male
205.9
GTEX-RNOR-0011-R1A-SM-CNNP5
50-59 years, female
192.9
GTEX-N7MS-0011-R1a-SM-2HMJG
60-69 years, male
186.6
GTEX-139TT-0011-R1a-SM-5LZVD
60-69 years, male
186.3
GTEX-1EMGI-0011-R1b-SM-9OSWZ
60-69 years, male
183.1
GTEX-12WSF-0011-R1a-SM-5DUVI
70-79 years, male
179.0
GTEX-1GF9W-0011-R1a-SM-9QEIQ
60-69 years, male
177.4
GTEX-1EX96-0011-R1a-SM-CE6R5
50-59 years, male
176.4
GTEX-T6MN-0011-R1A-SM-32QOY
50-59 years, male
176.2
GTEX-1AX9I-0011-R1b-SM-7RHG2
60-69 years, male
176.2
GTEX-14JIY-0011-R1a-SM-68713
60-69 years, male
166.5
GTEX-1313W-0011-R1b-SM-5EQ4A
50-59 years, female
166.1
GTEX-16YQH-0011-R1a-SM-7LT8R
30-39 years, male
160.2
GTEX-1IDJH-0011-R1b-SM-ARU6U
70-79 years, male
159.7
GTEX-X585-0011-R1B-SM-46MVE
50-59 years, male
155.1
GTEX-12WSE-0011-R1b-SM-5GU4V
20-29 years, male
154.4
GTEX-Q2AG-0011-R1A-SM-2HMJI
40-49 years, female
153.9
GTEX-1ICLZ-0011-R1b-SM-A9SM3
60-69 years, male
152.5
GTEX-13FXS-0011-R1a-SM-5K7U6
50-59 years, male
152.1
GTEX-1CB4G-0011-R1b-SM-9QEHT
60-69 years, male
149.6
GTEX-YFC4-0011-R1a-SM-4V6EH
40-49 years, female
149.5
GTEX-14LLW-0011-R1a-SM-5ZZVD
70-79 years, female
148.6
GTEX-14ABY-0011-R1a-SM-6EU2W
50-59 years, male
148.5
GTEX-145MH-0011-R1b-SM-5PNWY
50-59 years, male
147.8
GTEX-131XH-0011-R1a-SM-5DUWA
50-59 years, male
146.5
GTEX-13JUV-0011-R1a-SM-5LZY4
40-49 years, female
145.9
GTEX-1IOXB-0011-R1a-SM-D4P27
50-59 years, male
145.0
GTEX-PVOW-0011-R1A-SM-32PL6
40-49 years, male
144.0
GTEX-13O3Q-0011-R1b-SM-5KM3L
50-59 years, male
137.8
GTEX-13NYB-0011-R1b-SM-5KM4F
40-49 years, male
134.4
GTEX-WL46-0011-R1A-SM-3LK6M
50-59 years, male
133.9
GTEX-WWYW-0011-R1A-SM-3TW8G
50-59 years, female
133.6
GTEX-13112-0011-R1b-SM-5HL7K
50-59 years, male
132.7
GTEX-14C5O-0011-R1b-SM-6AJBW
60-69 years, male
132.6
GTEX-1B8SF-0011-R1b-SM-7P8Q8
60-69 years, male
131.3
GTEX-1F75A-0011-R1b-SM-CE6RA
50-59 years, male
130.9
GTEX-1H3NZ-0011-R1a-SM-CKZP5
60-69 years, male
128.8
GTEX-144GL-0011-R1a-SM-5PNZ5
50-59 years, male
125.8
GTEX-TSE9-0011-R1A-SM-3DB7E
60-69 years, female
122.6
GTEX-13FLW-0011-R1b-SM-5LZX2
50-59 years, male
121.4
GTEX-P44G-0011-R1A-SM-2I3FE
30-39 years, male
121.4
GTEX-14E6D-0011-R1b-SM-5YYAW
50-59 years, male
120.4
GTEX-1F48J-0011-R1a-SM-9QEIC
50-59 years, female
116.8
GTEX-17HG3-0011-R1a-SM-7LG6H
30-39 years, female
114.3
GTEX-12WSM-0011-R1a-SM-5LZW6
60-69 years, male
114.1
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y
40-49 years, male
113.0
GTEX-13OW6-0011-R1a-SM-5L3HQ
50-59 years, male
108.6
GTEX-N7MT-0011-R1a-SM-CNPO1
60-69 years, female
108.2
GTEX-1EWIQ-0011-R1a-SM-9OSX7
70-79 years, female
107.7
GTEX-13X6I-0011-R1b-SM-5PNZC
60-69 years, male
104.0
GTEX-1F6I4-0011-R1a-SM-9OSWU
60-69 years, male
103.4
GTEX-11GS4-0011-R1a-SM-DO129
60-69 years, male
102.5
GTEX-R55E-0011-R1A-SM-2TC6N
20-29 years, male
101.4
GTEX-1GTWX-0011-R1a-SM-CE6RL
60-69 years, male
101.0
GTEX-T5JC-0011-R1A-SM-32PM6
20-29 years, male
98.8
GTEX-12WSH-0011-R1a-SM-5GU5V
50-59 years, male
98.5
GTEX-ZDXO-0011-R1a-SM-4WKF4
60-69 years, male
98.2
GTEX-12WSD-0011-R1b-SM-5LZVY
60-69 years, female
95.9
GTEX-1GN73-0011-R1a-SM-CKZNT
60-69 years, male
95.7
GTEX-13N1W-0011-R1b-SM-5MR4T
70-79 years, male
94.6
GTEX-1IY9M-0011-R1a-SM-EXURZ
60-69 years, male
93.8
GTEX-1H1ZS-0011-R1b-SM-A9G1E
70-79 years, male
93.1
GTEX-17HHY-0011-R1a-SM-7189V
50-59 years, male
91.4
GTEX-1I1GS-0011-R1a-SM-CJI43
60-69 years, male
91.2
GTEX-11DXW-0011-R1a-SM-DNZZD
40-49 years, male
91.0
GTEX-1HT8W-0011-R1b-SM-CJI3V
30-39 years, male
90.8
GTEX-NL3H-0011-R1a-SM-48TDJ
60-69 years, male
90.6
GTEX-1H3O1-0011-R1b-SM-CL554
60-69 years, male
90.0
GTEX-1HSKV-0011-R1b-SM-CMKH7
60-69 years, male
89.7
GTEX-14ASI-0011-R1b-SM-5S2TY
60-69 years, male
88.0
GTEX-16XZZ-0011-R1a-SM-7LTAH
60-69 years, male
87.7
GTEX-ZAB4-0011-R1a-SM-4RGNO
40-49 years, male
87.6
GTEX-15ER7-0011-R1b-SM-7KUE1
20-29 years, female
84.5
GTEX-1B933-0011-R1b-SM-9QEGW
50-59 years, female
82.4
GTEX-13G51-0011-R1a-SM-5LZYR
60-69 years, male
82.2
GTEX-1C6VR-0011-R1a-SM-7MXUE
60-69 years, male
82.1
GTEX-16Z82-0011-R1b-SM-7EPHZ
60-69 years, male
81.7
GTEX-WZTO-0011-R1B-SM-3NMAR
40-49 years, male
81.0
GTEX-1EKGG-0011-R1b-SM-9QEI1
60-69 years, male
80.1
GTEX-13N2G-0011-R1b-SM-5MR3G
60-69 years, male
78.0
GTEX-1LG7Y-0011-R1a-SM-EYYWV
50-59 years, male
77.4
GTEX-S7SE-0011-R1A-SM-2XCDE
50-59 years, male
76.5
GTEX-P44H-0011-R1A-SM-3NM8J
40-49 years, male
75.2
GTEX-12ZZX-0011-R1a-SM-5EQ6B
40-49 years, female
74.5
GTEX-1399T-0011-R1b-SM-5DUWN
60-69 years, male
73.2
GTEX-15DCD-0011-R1b-SM-6LPIJ
70-79 years, female
73.1
GTEX-17EVP-0011-R1a-SM-7DHLA
40-49 years, male
72.9
GTEX-14PN4-0011-R1b-SM-69LP8
50-59 years, male
72.7
GTEX-QDT8-0011-R1A-SM-32PKS
30-39 years, female
71.7
GTEX-1GMR8-0011-R1b-SM-CJI2O
50-59 years, female
71.6
GTEX-1B8L1-0011-R1a-SM-7P8SS
60-69 years, male
71.0
GTEX-1A8G6-0011-R1a-SM-7P8PC
60-69 years, male
70.9
GTEX-1E1VI-0011-R1a-SM-ARZMM
50-59 years, male
70.4
GTEX-1F6IF-0011-R1b-SM-9WG78
60-69 years, male
69.6
GTEX-1A3MX-0011-R1b-SM-7P8PH
60-69 years, male
69.0
GTEX-1HBPI-0011-R1b-SM-A9SKF
50-59 years, male
68.6
GTEX-ZUA1-0011-R1a-SM-4YCE2
40-49 years, male
68.3
GTEX-11GSP-0011-R1a-SM-9QEJ3
60-69 years, female
65.3
GTEX-1GN1U-0011-R1a-SM-CJI25
50-59 years, female
65.0
GTEX-X4XX-0011-R1B-SM-3P622
60-69 years, male
64.3
GTEX-13S7M-0011-R1b-SM-5PNZE
60-69 years, female
64.2
GTEX-145LS-0011-R1b-SM-5PNUP
60-69 years, female
63.7
GTEX-1IKK5-0011-R1b-SM-CE6SQ
60-69 years, male
63.7
GTEX-11EI6-0011-R1a-SM-DO93L
60-69 years, male
63.3
GTEX-14PJM-0011-R1a-SM-CNPO3
50-59 years, female
62.1
GTEX-1B996-0011-R1b-SM-7P8PO
60-69 years, male
61.2
GTEX-1I1GQ-0011-R1a-SM-CY8GG
50-59 years, male
60.9
GTEX-15CHQ-0011-R1a-SM-COH27
60-69 years, male
60.6
GTEX-1CB4J-0011-R1a-SM-9WG64
60-69 years, male
60.6
GTEX-QMR6-0011-R1A-SM-32PKW
50-59 years, male
59.8
GTEX-1I1HK-0011-R1b-SM-CM2T7
60-69 years, male
59.1
GTEX-Y8DK-0011-R1A-SM-4RGLO
60-69 years, male
57.9
GTEX-131YS-0011-R1a-SM-5DUXC
60-69 years, female
57.7
GTEX-1HSMO-0011-R1a-SM-CM2SV
60-69 years, male
57.6
GTEX-1J1OQ-0011-R1a-SM-A9G1Z
40-49 years, female
56.9
GTEX-13PDP-0011-R1a-SM-5PNX5
60-69 years, male
56.0
GTEX-13OW7-0011-R1b-SM-5L3HF
50-59 years, male
55.3
GTEX-1LB8K-0011-R1b-SM-EZ6MV
50-59 years, male
55.2
GTEX-17JCI-0011-R1b-SM-718A3
60-69 years, female
54.6
GTEX-11ONC-0011-R1a-SM-57WD4
60-69 years, male
54.0
GTEX-QVJO-0011-R1A-SM-2S1QI
60-69 years, female
53.4
GTEX-14BIM-0011-R1a-SM-69LQI
60-69 years, female
52.4
GTEX-NPJ7-0011-R1a-SM-3GACT
60-69 years, female
51.9
GTEX-14E7W-0011-R1b-SM-5YYAT
70-79 years, male
50.9
GTEX-WVLH-0011-R1A-SM-4MVOK
50-59 years, male
50.9
GTEX-139T8-0011-R1a-SM-5HL75
60-69 years, male
50.6
GTEX-YJ89-0011-R1a-SM-4RGLS
60-69 years, male
50.5
GTEX-1H3VE-0011-R1a-SM-A9G1K
40-49 years, male
50.4
GTEX-13OVJ-0011-R1b-SM-5L3I6
50-59 years, female
49.2
GTEX-13NYS-0011-R1b-SM-5MR55
60-69 years, male
48.8
GTEX-1GN2E-0011-R1b-SM-CE6RJ
60-69 years, male
48.5
GTEX-145LU-0011-R1a-SM-5Q5CE
50-59 years, male
48.4
GTEX-ZF28-0011-R1a-SM-4WWD1
60-69 years, male
47.9
GTEX-1H1CY-0011-R1a-SM-CKZOZ
60-69 years, female
47.4
GTEX-1C64N-0011-R1b-SM-7P8Q7
50-59 years, male
46.8
GTEX-17HII-0011-R1b-SM-7MGVW
50-59 years, male
44.5
GTEX-18A6Q-0011-R1b-SM-731DI
60-69 years, male
44.1
GTEX-PWO3-0011-R1A-SM-2I5EW
60-69 years, female
44.0
GTEX-11GSO-0011-R1b-SM-57WD3
60-69 years, male
43.8
GTEX-17F97-0011-R1b-SM-7IGM9
50-59 years, male
43.7
GTEX-1C6VQ-0011-R1a-SM-7P8Q2
50-59 years, male
43.7
GTEX-1H1DG-0011-R1b-SM-CKZP1
70-79 years, male
43.5
GTEX-1EH9U-0011-R1b-SM-CJI2B
60-69 years, male
42.5
GTEX-13OVL-0011-R1a-SM-5L3H5
50-59 years, male
42.1
GTEX-13RTJ-0011-R1a-SM-5O9D9
60-69 years, male
41.3
GTEX-13RTL-0011-R1a-SM-5PNZ8
40-49 years, male
41.0
GTEX-13FHO-0011-R1b-SM-5KLZG
60-69 years, male
40.9
GTEX-1HGF4-0011-R1a-SM-CJI3S
60-69 years, male
40.9
GTEX-13NZ8-0011-R1b-SM-5KM3V
60-69 years, female
40.8
GTEX-1J8Q2-0011-R1a-SM-D4P2D
60-69 years, male
39.2
GTEX-UTHO-0011-R1A-SM-3GIJO
60-69 years, male
38.9
GTEX-1BAJH-0011-R1a-SM-7P8SV
70-79 years, male
38.8
GTEX-1E2YA-0011-R1b-SM-CJI29
50-59 years, male
38.6
GTEX-QVUS-0011-R1A-SM-3GAD2
60-69 years, female
38.1
GTEX-11UD1-0011-R1b-SM-5BC7D
40-49 years, female
37.5
GTEX-17EVQ-0011-R1a-SM-7189S
70-79 years, male
36.8
GTEX-1I1GV-0011-R1a-SM-CL559
60-69 years, male
36.8
GTEX-13FHP-0011-R1b-SM-5K7XL
50-59 years, male
36.5
GTEX-13CF2-0011-R1a-SM-5LZY1
60-69 years, male
36.0
GTEX-13FTY-0011-R1a-SM-5LZXE
40-49 years, female
36.0
GTEX-13QJC-0011-R1b-SM-5S2UU
60-69 years, female
35.9
GTEX-13SLW-0011-R1a-SM-5S2W7
70-79 years, male
35.9
GTEX-183WM-0011-R1a-SM-718A8
70-79 years, female
35.8
GTEX-NPJ8-0011-R1a-SM-33HCB
40-49 years, male
35.8
GTEX-15UF6-0011-R1a-SM-9QEGH
70-79 years, female
35.8
GTEX-1A32A-0011-R1a-SM-7P8SQ
50-59 years, female
34.9
GTEX-132Q8-0011-R1a-SM-5EGLK
60-69 years, male
34.6
GTEX-1H23P-0011-R1a-SM-ACKVC
60-69 years, male
34.2
GTEX-1GF9V-0011-R1a-SM-CKZNQ
60-69 years, male
33.9
GTEX-14PQA-0011-R1b-SM-6EU1G
50-59 years, female
33.7
GTEX-13QIC-0011-R1a-SM-5O9CJ
60-69 years, female
32.7
GTEX-13OW5-0011-R1b-SM-5L3GE
60-69 years, male
32.4
GTEX-13NZA-0011-R1b-SM-5LUAF
60-69 years, male
31.6
GTEX-1H4P4-0011-R1b-SM-CL54V
50-59 years, male
31.4
GTEX-ZVZQ-0011-R1a-SM-57WBU
60-69 years, female
31.1
GTEX-13OW8-0011-R1a-SM-5L3HI
60-69 years, male
31.0
GTEX-1F75W-0011-R1a-SM-ARU81
60-69 years, male
30.8
GTEX-17MF6-0011-R1a-SM-72D6O
40-49 years, male
30.3
GTEX-ZE7O-0011-R1a-SM-57WDM
50-59 years, female
30.3
GTEX-11WQC-0011-R1b-SM-DO932
60-69 years, male
30.2
GTEX-1GZHY-0011-R1a-SM-CE6RR
50-59 years, female
29.9
GTEX-1212Z-0011-R1b-SM-5BC72
60-69 years, male
29.2
GTEX-X4EP-0011-R1A-SM-3P624
60-69 years, female
29.2
GTEX-16GPK-0011-R1b-SM-7EWDH
60-69 years, male
28.6
GTEX-14LZ3-0011-R1a-SM-69LP5
60-69 years, female
28.0
GTEX-1CAV2-0011-R1a-SM-ARZML
40-49 years, female
27.2
GTEX-13JVG-0011-R1a-SM-5KM32
60-69 years, male
27.1
GTEX-14PJO-0011-R1b-SM-6AJAK
60-69 years, male
27.0
GTEX-1HR98-0011-R1a-SM-ARZLQ
60-69 years, male
26.1
GTEX-OHPN-0011-R1A-SM-2I5GB
60-69 years, female
25.9
GTEX-144GO-0011-R1a-SM-5PNWO
60-69 years, male
24.9
GTEX-XMD1-0011-R1A-SM-4AT4C
60-69 years, male
24.0
GTEX-11TUW-0011-R1a-SM-DO92S
60-69 years, male
22.3
GTEX-11ZVC-0011-R1b-SM-5BC6M
50-59 years, female
22.0
GTEX-11ZTS-0011-R1a-SM-5BC71
60-69 years, female
20.1
GTEX-16NPV-0011-R1b-SM-7MGVZ
50-59 years, female
19.5
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
325.7
Mouse sample
Sample description
nTPM
Entorhinal cortex nTPM: 325.7
Samples: 4
Max nTPM: 353.6
Min nTPM: 305.7
Sample A
Male
305.7
Sample B
Male
333.2
Sample C
Female
310.3
Sample D
Female
353.6
Hippocampal formation nTPM: 322.4
Samples: 4
Max nTPM: 339.0
Min nTPM: 309.0
Sample A
Male
321.0
Sample B
Male
320.6
Sample C
Female
339.0
Sample D
Female
309.0
HIPPOCAMPAL FORMATION - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.