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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
h
m
l
n
Glial cells:
Medium
Neuronal cells:
Medium
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
11.3
nTPM
HPA Brain:
112.3
nTPM
GTEx:
11.3
nTPM
FANTOM5:
36.0
Scaled Tags Per Million
Pig:
39.4
nTPM
Mouse:
23.2
nTPM
Allen mouse:
2.0
Expression energy
HIPPOCAMPUS - Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
Antibody HPA005456
Antibody CAB016334
Glial cells
Medium
High
Neuronal cells
Medium
High
HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
112.3
Sample id
Sample description
nTPM
Hippocampus nTPM: 108.9
2621
Female, age 67, right hemisphere
150.4
2529
Female, age 94, left hemisphere
146.3
2148
Female, age 91, left hemisphere
97.6
1855
Male, age 76, left hemisphere
93.5
1911
Female, age 85, right hemisphere
90.6
1898
Male, age 80, left hemisphere
75.0
Dentate gyrus nTPM: 100.6
2530
Female, age 94, left hemisphere
136.0
2531
Female, age 67, both hemispheres
128.7
2246
Female, age 85, both hemispheres
118.3
2528
Male, age 74, both hemispheres
81.7
2010
Male, age 76, both hemispheres
74.3
1927
Female, age 91, both hemispheres
64.6
Entorhinal gyrus nTPM: 110.2
2686
Male, age 75, right hemisphere
131.8
2613
Female, age 94, left hemisphere
129.8
2117
Female, age 91, right hemisphere
113.6
1787
Male, age 76, left hemisphere
105.2
2764
Male, age 80, right hemisphere
97.5
1938
Female, age 85, left hemisphere
83.5
Hippocampus, CA1 nTPM: 85.1
2527
Male, age 74, both hemispheres
110.2
2082
Female, age 91, right hemisphere
84.3
1873
Female, age 85, both hemispheres
84.2
2045
Male, age 76, both hemispheres
74.0
2749
Male, age 80, left hemisphere
72.9
Hippocampus, CA2 nTPM: 83.6
2437
Female, age 94, left hemisphere
98.8
1940
Female, age 85, left hemisphere
96.1
2113
Female, age 91, right hemisphere
92.5
1963
Male, age 80, left hemisphere
81.5
1892
Male, age 76, both hemispheres
68.4
2249
Male, age 74, both hemispheres
64.2
Hippocampus, CA3 nTPM: 95.8
2861
Female, age 67, both hemispheres
144.4
2620
Female, age 94, left hemisphere
114.8
1891
Female, age 85, both hemispheres
91.4
2137
Male, age 80, left hemisphere
78.4
2436
Male, age 74, both hemispheres
73.0
1867
Male, age 76, both hemispheres
72.5
Parahippocampal cortex nTPM: 110.8
2245
Female, age 91, both hemispheres
161.5
2622
Female, age 67, right hemisphere
157.9
2692
Male, age 74, both hemispheres
145.6
2532
Female, age 72, left hemisphere
128.5
2693
Female, age 94, both hemispheres
93.6
2250
Female, age 67, right hemisphere
90.2
2018
Male, age 76, both hemispheres
86.8
1933
Female, age 85, both hemispheres
83.3
1850
Male, age 80, both hemispheres
80.5
1990
Female, age 91, right hemisphere
79.9
Perirhinal gyrus nTPM: 82.9
2848
Male, age 76, right hemisphere
102.1
2521
Female, age 94, right hemisphere
89.6
1794
Male, age 80, right hemisphere
79.2
1841
Female, age 85, right hemisphere
76.6
1847
Female, age 91, left hemisphere
67.0
Subiculum nTPM: 112.3
2438
Female, age 94, left hemisphere
162.9
2619
Male, age 74, both hemispheres
132.1
2042
Male, age 76, both hemispheres
111.1
1901
Male, age 80, both hemispheres
93.2
1977
Female, age 85, both hemispheres
89.4
2729
Female, age 91, right hemisphere
85.2
HIPPOCAMPAL FORMATION - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
11.3
GTEx sample id
Sample description
nTPM
Brain - Hippocampus Average nTPM: 11.3
Samples: 197
Max nTPM: 18.7
Min nTPM: 4.8
Std nTPM: 2.0
Median nTPM: 11.1
GTEX-13NZ8-0011-R1b-SM-5KM3V
60-69 years, female
18.7
GTEX-13QJC-0011-R1b-SM-5S2UU
60-69 years, female
18.6
GTEX-P44G-0011-R1A-SM-2I3FE
30-39 years, male
18.1
GTEX-WHSE-0011-R1A-SM-3P5ZK
20-29 years, male
17.1
GTEX-13QIC-0011-R1a-SM-5O9CJ
60-69 years, female
17.0
GTEX-1H23P-0011-R1a-SM-ACKVC
60-69 years, male
17.0
GTEX-X4XX-0011-R1B-SM-3P622
60-69 years, male
16.8
GTEX-13RTJ-0011-R1a-SM-5O9D9
60-69 years, male
15.8
GTEX-132Q8-0011-R1a-SM-5EGLK
60-69 years, male
15.3
GTEX-14LZ3-0011-R1a-SM-69LP5
60-69 years, female
15.3
GTEX-13PDP-0011-R1a-SM-5PNX5
60-69 years, male
15.1
GTEX-13OVL-0011-R1a-SM-5L3H5
50-59 years, male
14.9
GTEX-R55E-0011-R1A-SM-2TC6N
20-29 years, male
14.8
GTEX-13SLW-0011-R1a-SM-5S2W7
70-79 years, male
14.2
GTEX-13G51-0011-R1a-SM-5LZYR
60-69 years, male
14.1
GTEX-13S7M-0011-R1b-SM-5PNZE
60-69 years, female
14.0
GTEX-13FHO-0011-R1b-SM-5KLZG
60-69 years, male
13.9
GTEX-17EVP-0011-R1a-SM-7DHLA
40-49 years, male
13.8
GTEX-14PJO-0011-R1b-SM-6AJAK
60-69 years, male
13.7
GTEX-17MF6-0011-R1a-SM-72D6O
40-49 years, male
13.7
GTEX-15UF6-0011-R1a-SM-9QEGH
70-79 years, female
13.7
GTEX-1GZHY-0011-R1a-SM-CE6RR
50-59 years, female
13.7
GTEX-1I1GV-0011-R1a-SM-CL559
60-69 years, male
13.7
GTEX-18A6Q-0011-R1b-SM-731DI
60-69 years, male
13.6
GTEX-TSE9-0011-R1A-SM-3DB7E
60-69 years, female
13.4
GTEX-1CAV2-0011-R1a-SM-ARZML
40-49 years, female
13.4
GTEX-13JVG-0011-R1a-SM-5KM32
60-69 years, male
13.3
GTEX-11GSO-0011-R1b-SM-57WD3
60-69 years, male
13.2
GTEX-13OW8-0011-R1a-SM-5L3HI
60-69 years, male
13.2
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y
40-49 years, male
13.2
GTEX-13NZA-0011-R1b-SM-5LUAF
60-69 years, male
13.1
GTEX-XMD1-0011-R1A-SM-4AT4C
60-69 years, male
13.1
GTEX-1212Z-0011-R1b-SM-5BC72
60-69 years, male
13.0
GTEX-14PQA-0011-R1b-SM-6EU1G
50-59 years, female
13.0
GTEX-NPJ8-0011-R1a-SM-33HCB
40-49 years, male
13.0
GTEX-QVUS-0011-R1A-SM-3GAD2
60-69 years, female
13.0
GTEX-13FTY-0011-R1a-SM-5LZXE
40-49 years, female
12.9
GTEX-1HBPI-0011-R1b-SM-A9SKF
50-59 years, male
12.9
GTEX-11ONC-0011-R1a-SM-57WD4
60-69 years, male
12.8
GTEX-144GO-0011-R1a-SM-5PNWO
60-69 years, male
12.8
GTEX-1J1OQ-0011-R1a-SM-A9G1Z
40-49 years, female
12.6
GTEX-13OW5-0011-R1b-SM-5L3GE
60-69 years, male
12.5
GTEX-13OW6-0011-R1a-SM-5L3HQ
50-59 years, male
12.5
GTEX-14PN4-0011-R1b-SM-69LP8
50-59 years, male
12.5
GTEX-16GPK-0011-R1b-SM-7EWDH
60-69 years, male
12.5
GTEX-1E2YA-0011-R1b-SM-CJI29
50-59 years, male
12.5
GTEX-131XH-0011-R1a-SM-5DUWA
50-59 years, male
12.4
GTEX-UTHO-0011-R1A-SM-3GIJO
60-69 years, male
12.4
GTEX-WL46-0011-R1A-SM-3LK6M
50-59 years, male
12.4
GTEX-1I1GQ-0011-R1a-SM-CY8GG
50-59 years, male
12.4
GTEX-17JCI-0011-R1b-SM-718A3
60-69 years, female
12.3
GTEX-11WQC-0011-R1b-SM-DO932
60-69 years, male
12.3
GTEX-1C6VR-0011-R1a-SM-7MXUE
60-69 years, male
12.3
GTEX-1CB4J-0011-R1a-SM-9WG64
60-69 years, male
12.3
GTEX-15ER7-0011-R1b-SM-7KUE1
20-29 years, female
12.2
GTEX-1GN2E-0011-R1b-SM-CE6RJ
60-69 years, male
12.2
GTEX-13FHP-0011-R1b-SM-5K7XL
50-59 years, male
12.1
GTEX-QVJO-0011-R1A-SM-2S1QI
60-69 years, female
12.1
GTEX-ZDXO-0011-R1a-SM-4WKF4
60-69 years, male
12.1
GTEX-13FLW-0011-R1b-SM-5LZX2
50-59 years, male
12.0
GTEX-145MH-0011-R1b-SM-5PNWY
50-59 years, male
12.0
GTEX-17EVQ-0011-R1a-SM-7189S
70-79 years, male
12.0
GTEX-WVLH-0011-R1A-SM-4MVOK
50-59 years, male
12.0
GTEX-1C64N-0011-R1b-SM-7P8Q7
50-59 years, male
12.0
GTEX-1GTWX-0011-R1a-SM-CE6RL
60-69 years, male
12.0
GTEX-11GSP-0011-R1a-SM-9QEJ3
60-69 years, female
11.9
GTEX-1H1DG-0011-R1b-SM-CKZP1
70-79 years, male
11.9
GTEX-131YS-0011-R1a-SM-5DUXC
60-69 years, female
11.8
GTEX-14C5O-0011-R1b-SM-6AJBW
60-69 years, male
11.8
GTEX-1A32A-0011-R1a-SM-7P8SQ
50-59 years, female
11.8
GTEX-P44H-0011-R1A-SM-3NM8J
40-49 years, male
11.7
GTEX-QDT8-0011-R1A-SM-32PKS
30-39 years, female
11.7
GTEX-11TUW-0011-R1a-SM-DO92S
60-69 years, male
11.7
GTEX-1B8L1-0011-R1a-SM-7P8SS
60-69 years, male
11.7
GTEX-1GF9V-0011-R1a-SM-CKZNQ
60-69 years, male
11.7
GTEX-X4EP-0011-R1A-SM-3P624
60-69 years, female
11.6
GTEX-1GN1U-0011-R1a-SM-CJI25
50-59 years, female
11.6
GTEX-1H1ZS-0011-R1b-SM-A9G1E
70-79 years, male
11.6
GTEX-1H4P4-0011-R1b-SM-CL54V
50-59 years, male
11.6
GTEX-11ZVC-0011-R1b-SM-5BC6M
50-59 years, female
11.5
GTEX-13JUV-0011-R1a-SM-5LZY4
40-49 years, female
11.5
GTEX-Q2AG-0011-R1A-SM-2HMJI
40-49 years, female
11.5
GTEX-1EH9U-0011-R1b-SM-CJI2B
60-69 years, male
11.5
GTEX-1IY9M-0011-R1a-SM-EXURZ
60-69 years, male
11.5
GTEX-16Z82-0011-R1b-SM-7EPHZ
60-69 years, male
11.4
GTEX-1IKK5-0011-R1b-SM-CE6SQ
60-69 years, male
11.4
GTEX-13N1W-0011-R1b-SM-5MR4T
70-79 years, male
11.3
GTEX-183WM-0011-R1a-SM-718A8
70-79 years, female
11.3
GTEX-WWYW-0011-R1A-SM-3TW8G
50-59 years, female
11.3
GTEX-ZAB4-0011-R1a-SM-4RGNO
40-49 years, male
11.3
GTEX-12WSD-0011-R1b-SM-5LZVY
60-69 years, female
11.2
GTEX-13CF2-0011-R1a-SM-5LZY1
60-69 years, male
11.2
GTEX-PWO3-0011-R1A-SM-2I5EW
60-69 years, female
11.2
GTEX-13N2G-0011-R1b-SM-5MR3G
60-69 years, male
11.1
GTEX-14BIM-0011-R1a-SM-69LQI
60-69 years, female
11.1
GTEX-17HHY-0011-R1a-SM-7189V
50-59 years, male
11.1
GTEX-ZE7O-0011-R1a-SM-57WDM
50-59 years, female
11.1
GTEX-1F48J-0011-R1a-SM-9QEIC
50-59 years, female
11.1
GTEX-1HT8W-0011-R1b-SM-CJI3V
30-39 years, male
11.1
GTEX-S7SE-0011-R1A-SM-2XCDE
50-59 years, male
11.0
GTEX-1B996-0011-R1b-SM-7P8PO
60-69 years, male
11.0
GTEX-WZTO-0011-R1B-SM-3NMAR
40-49 years, male
10.9
GTEX-11UD1-0011-R1b-SM-5BC7D
40-49 years, female
10.8
GTEX-NPJ7-0011-R1a-SM-3GACT
60-69 years, female
10.8
GTEX-ZF28-0011-R1a-SM-4WWD1
60-69 years, male
10.8
GTEX-17HII-0011-R1b-SM-7MGVW
50-59 years, male
10.8
GTEX-1HGF4-0011-R1a-SM-CJI3S
60-69 years, male
10.8
GTEX-12WSM-0011-R1a-SM-5LZW6
60-69 years, male
10.7
GTEX-13RTL-0011-R1a-SM-5PNZ8
40-49 years, male
10.7
GTEX-1GMR8-0011-R1b-SM-CJI2O
50-59 years, female
10.7
GTEX-1HR98-0011-R1a-SM-ARZLQ
60-69 years, male
10.7
GTEX-1I1HK-0011-R1b-SM-CM2T7
60-69 years, male
10.7
GTEX-1IDJH-0011-R1b-SM-ARU6U
70-79 years, male
10.7
GTEX-1IOXB-0011-R1a-SM-D4P27
50-59 years, male
10.7
GTEX-11ZTS-0011-R1a-SM-5BC71
60-69 years, female
10.6
GTEX-17F97-0011-R1b-SM-7IGM9
50-59 years, male
10.6
GTEX-1GF9W-0011-R1a-SM-9QEIQ
60-69 years, male
10.6
GTEX-RNOR-0011-R1A-SM-CNNP5
50-59 years, female
10.6
GTEX-13X6I-0011-R1b-SM-5PNZC
60-69 years, male
10.5
GTEX-14E6D-0011-R1b-SM-5YYAW
50-59 years, male
10.5
GTEX-11DXW-0011-R1a-SM-DNZZD
40-49 years, male
10.5
GTEX-1A8G6-0011-R1a-SM-7P8PC
60-69 years, male
10.5
GTEX-1F6IF-0011-R1b-SM-9WG78
60-69 years, male
10.5
GTEX-13O3Q-0011-R1b-SM-5KM3L
50-59 years, male
10.4
GTEX-14ABY-0011-R1a-SM-6EU2W
50-59 years, male
10.4
GTEX-1J8Q2-0011-R1a-SM-D4P2D
60-69 years, male
10.4
GTEX-13OVJ-0011-R1b-SM-5L3I6
50-59 years, female
10.3
GTEX-14ASI-0011-R1b-SM-5S2TY
60-69 years, male
10.3
GTEX-14E7W-0011-R1b-SM-5YYAT
70-79 years, male
10.3
GTEX-16XZZ-0011-R1a-SM-7LTAH
60-69 years, male
10.3
GTEX-1ICLZ-0011-R1b-SM-A9SM3
60-69 years, male
10.3
GTEX-1LB8K-0011-R1b-SM-EZ6MV
50-59 years, male
10.3
GTEX-15CHQ-0011-R1a-SM-COH27
60-69 years, male
10.2
GTEX-1EKGG-0011-R1b-SM-9QEI1
60-69 years, male
10.2
GTEX-1LG7Y-0011-R1a-SM-EYYWV
50-59 years, male
10.2
GTEX-139T8-0011-R1a-SM-5HL75
60-69 years, male
10.1
GTEX-Y8DK-0011-R1A-SM-4RGLO
60-69 years, male
10.1
GTEX-1AX9I-0011-R1b-SM-7RHG2
60-69 years, male
10.1
GTEX-1EMGI-0011-R1b-SM-9OSWZ
60-69 years, male
10.1
GTEX-1EWIQ-0011-R1a-SM-9OSX7
70-79 years, female
10.1
GTEX-1H3VE-0011-R1a-SM-A9G1K
40-49 years, male
10.1
GTEX-1313W-0011-R1b-SM-5EQ4A
50-59 years, female
10.0
GTEX-15DCD-0011-R1b-SM-6LPIJ
70-79 years, female
10.0
GTEX-NL3H-0011-R1a-SM-48TDJ
60-69 years, male
10.0
GTEX-ZUA1-0011-R1a-SM-4YCE2
40-49 years, male
10.0
GTEX-16NPV-0011-R1b-SM-7MGVZ
50-59 years, female
10.0
GTEX-1C6VQ-0011-R1a-SM-7P8Q2
50-59 years, male
10.0
GTEX-1H3NZ-0011-R1a-SM-CKZP5
60-69 years, male
10.0
GTEX-12WSE-0011-R1b-SM-5GU4V
20-29 years, male
9.9
GTEX-YFC4-0011-R1a-SM-4V6EH
40-49 years, female
9.9
GTEX-11EI6-0011-R1a-SM-DO93L
60-69 years, male
9.9
GTEX-13FXS-0011-R1a-SM-5K7U6
50-59 years, male
9.8
GTEX-14JIY-0011-R1a-SM-68713
60-69 years, male
9.8
GTEX-YJ89-0011-R1a-SM-4RGLS
60-69 years, male
9.8
GTEX-1HSMO-0011-R1a-SM-CM2SV
60-69 years, male
9.8
GTEX-N7MT-0011-R1a-SM-CNPO1
60-69 years, female
9.8
GTEX-139TT-0011-R1a-SM-5LZVD
60-69 years, male
9.7
GTEX-1B8SF-0011-R1b-SM-7P8Q8
60-69 years, male
9.7
GTEX-1B933-0011-R1b-SM-9QEGW
50-59 years, female
9.7
GTEX-145LS-0011-R1b-SM-5PNUP
60-69 years, female
9.6
GTEX-16YQH-0011-R1a-SM-7LT8R
30-39 years, male
9.6
GTEX-17HG3-0011-R1a-SM-7LG6H
30-39 years, female
9.6
GTEX-X585-0011-R1B-SM-46MVE
50-59 years, male
9.6
GTEX-1HSKV-0011-R1b-SM-CMKH7
60-69 years, male
9.6
GTEX-13NYB-0011-R1b-SM-5KM4F
40-49 years, male
9.5
GTEX-13NYS-0011-R1b-SM-5MR55
60-69 years, male
9.5
GTEX-N7MS-0011-R1a-SM-2HMJG
60-69 years, male
9.5
GTEX-QMR6-0011-R1A-SM-32PKW
50-59 years, male
9.5
GTEX-1F6I4-0011-R1a-SM-9OSWU
60-69 years, male
9.5
GTEX-1H1CY-0011-R1a-SM-CKZOZ
60-69 years, female
9.5
GTEX-13112-0011-R1b-SM-5HL7K
50-59 years, male
9.4
GTEX-ZVZQ-0011-R1a-SM-57WBU
60-69 years, female
9.4
GTEX-1I1GS-0011-R1a-SM-CJI43
60-69 years, male
9.4
GTEX-13OW7-0011-R1b-SM-5L3HF
50-59 years, male
9.3
GTEX-1A3MX-0011-R1b-SM-7P8PH
60-69 years, male
9.3
GTEX-1F75W-0011-R1a-SM-ARU81
60-69 years, male
9.3
GTEX-1H3O1-0011-R1b-SM-CL554
60-69 years, male
9.3
GTEX-11GS4-0011-R1a-SM-DO129
60-69 years, male
9.2
GTEX-1CB4G-0011-R1b-SM-9QEHT
60-69 years, male
9.1
GTEX-OHPN-0011-R1A-SM-2I5GB
60-69 years, female
9.0
GTEX-14PJM-0011-R1a-SM-CNPO3
50-59 years, female
9.0
GTEX-13O3O-0011-R1b-SM-5KM2K
60-69 years, female
8.9
GTEX-1F75A-0011-R1b-SM-CE6RA
50-59 years, male
8.9
GTEX-1GN73-0011-R1a-SM-CKZNT
60-69 years, male
8.9
GTEX-12WSF-0011-R1a-SM-5DUVI
70-79 years, male
8.8
GTEX-PVOW-0011-R1A-SM-32PL6
40-49 years, male
8.8
GTEX-1E1VI-0011-R1a-SM-ARZMM
50-59 years, male
8.8
GTEX-12WSH-0011-R1a-SM-5GU5V
50-59 years, male
8.7
GTEX-T5JC-0011-R1A-SM-32PM6
20-29 years, male
8.7
GTEX-1BAJH-0011-R1a-SM-7P8SV
70-79 years, male
8.7
GTEX-1EX96-0011-R1a-SM-CE6R5
50-59 years, male
8.6
GTEX-1399T-0011-R1b-SM-5DUWN
60-69 years, male
8.5
GTEX-12ZZX-0011-R1a-SM-5EQ6B
40-49 years, female
8.2
GTEX-145LU-0011-R1a-SM-5Q5CE
50-59 years, male
8.1
GTEX-T6MN-0011-R1A-SM-32QOY
50-59 years, male
7.7
GTEX-144GL-0011-R1a-SM-5PNZ5
50-59 years, male
7.4
GTEX-14LLW-0011-R1a-SM-5ZZVD
70-79 years, female
4.8
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
23.2
Mouse sample
Sample description
nTPM
Entorhinal cortex nTPM: 23.2
Samples: 4
Max nTPM: 28.1
Min nTPM: 19.8
Sample A
Male
23.8
Sample B
Male
21.0
Sample C
Female
19.8
Sample D
Female
28.1
Hippocampal formation nTPM: 19.4
Samples: 4
Max nTPM: 22.9
Min nTPM: 14.5
Sample A
Male
14.5
Sample B
Male
22.8
Sample C
Female
22.9
Sample D
Female
17.2
HIPPOCAMPAL FORMATION - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.