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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
127.8
nTPM
HPA Brain:
249.0
nTPM
GTEx:
127.8
nTPM
FANTOM5:
283.9
Scaled Tags Per Million
Pig:
34.8
nTPM
Mouse:
28.3
nTPM
Allen mouse:
1.5
Expression energy
MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
249.0
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 161.3
1830
Male, age 51, unknown
204.7
1870
Female, age 42, unknown
201.6
2019
Male, age 18, unknown
197.6
2411
Female, age 72, unknown
184.8
1833
Male, age 53, unknown
183.5
2586
Male, age 75, left hemisphere
176.6
2828
Female, age 72, unknown
142.8
2666
Male, age 74, left hemisphere
135.2
1827
Male, age 72, unknown
95.5
2219
Male, age 76, both hemispheres
90.7
Dorsal raphe nucleus nTPM: 128.6
2750
Male, age 76, both hemispheres
247.9
1828
Male, age 53, unknown
117.4
2047
Male, age 72, unknown
110.5
2016
Female, age 72, unknown
101.6
2298
Female, age 72, unknown
65.7
Inferior colliculus nTPM: 98.7
1890
Male, age 53, unknown
121.2
1848
Female, age 42, unknown
106.6
2849
Male, age 72, unknown
89.4
2097
Female, age 72, unknown
77.3
Median raphe nucleus nTPM: 152.5
2220
Male, age 76, midline
152.5
Periaquaductal grey, anterior nTPM: 68.3
1947
Male, age 18, unknown
70.5
2502
Female, age 75, unknown
69.3
1795
Male, age 51, unknown
65.1
Periaquaductal grey, dorsal nTPM: 58.5
2464
Female, age 72, unknown
88.6
1831
Male, age 72, unknown
75.3
2850
Male, age 76, both hemispheres
35.7
1840
Male, age 53, unknown
34.4
Periaquaductal grey, lateral nTPM: 66.9
2272
Male, age 74, both hemispheres
92.5
2053
Male, age 18, unknown
76.9
2140
Male, age 76, both hemispheres
31.1
Pretectal area nTPM: 82.4
2407
Male, age 75, both hemispheres
126.7
1815
Male, age 53, unknown
108.8
2316
Male, age 76, right hemisphere
107.4
2007
Male, age 72, unknown
101.7
1817
Female, age 42, unknown
94.3
2825
Male, age 18, unknown
91.1
2273
Male, age 74, both hemispheres
71.2
2224
Female, age 72, unknown
58.4
1944
Female, age 72, unknown
52.7
1816
Male, age 51, unknown
47.0
2667
Female, age 75, unknown
46.8
Red nucleus nTPM: 249.0
1865
Male, age 51, unknown
290.7
2823
Male, age 76, right hemisphere
280.2
1821
Female, age 72, unknown
267.0
2769
Male, age 72, unknown
265.1
2227
Male, age 72, unknown
264.1
2584
Male, age 75, left hemisphere
256.7
1904
Male, age 53, unknown
256.2
2588
Male, age 74, left hemisphere
239.1
2785
Male, age 18, unknown
231.0
2725
Female, age 75, unknown
218.4
1954
Female, age 42, unknown
212.1
2503
Female, age 72, unknown
207.2
Substantia nigra nTPM: 119.1
2583
Male, age 75, right hemisphere
180.0
2590
Female, age 75, unknown
164.7
1889
Female, age 72, unknown
127.8
1851
Male, age 51, unknown
127.3
1941
Male, age 53, unknown
123.7
2409
Female, age 72, unknown
117.3
2699
Male, age 18, unknown
101.9
1916
Female, age 42, unknown
90.5
2665
Male, age 74, both hemispheres
82.6
2241
Male, age 72, unknown
74.9
Superior colliculus nTPM: 113.3
1913
Female, age 42, unknown
162.5
1995
Male, age 72, unknown
147.3
2587
Male, age 74, left hemisphere
142.8
2668
Female, age 75, unknown
138.8
1839
Male, age 51, unknown
122.4
1895
Male, age 76, right hemisphere
119.3
1796
Male, age 53, unknown
90.5
2664
Male, age 75, both hemispheres
81.3
2261
Male, age 18, unknown
66.7
2087
Female, age 72, unknown
61.8
Ventral tegmental area nTPM: 158.4
2223
Female, age 72, unknown
314.8
2410
Female, age 72, unknown
166.1
2218
Male, age 76, both hemispheres
130.4
1942
Male, age 51, unknown
129.1
2021
Male, age 53, unknown
116.4
1915
Female, age 42, unknown
93.7
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
127.8
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 127.8
Samples: 139
Max nTPM: 655.5
Min nTPM: 28.6
Std nTPM: 80.6
Median nTPM: 113.2
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
655.5
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
522.3
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
300.7
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
300.1
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
278.7
GTEX-N7MT-0011-R2a-SM-2I3GI
60-69 years, female
266.3
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
257.2
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
254.7
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
245.6
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
244.7
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
241.2
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
216.6
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
211.2
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
204.3
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
201.2
GTEX-18464-0011-R2a-SM-731AL
50-59 years, male
200.6
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
199.3
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
188.3
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
185.9
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
183.5
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
182.8
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
180.9
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
180.0
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
177.9
GTEX-N7MS-0011-R2a-SM-2HML6
60-69 years, male
177.5
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
171.0
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
168.1
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
166.6
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
165.3
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
164.5
GTEX-P44G-0011-R2A-SM-2XCD2
30-39 years, male
164.2
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
159.6
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
158.4
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
155.0
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
151.0
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
148.9
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
144.3
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
143.7
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
142.0
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
142.0
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
141.5
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
141.0
GTEX-NL4W-0011-R2a-SM-2I5GV
50-59 years, male
140.8
GTEX-OXRO-0011-R2A-SM-3NB1W
60-69 years, female
140.5
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
140.4
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
139.4
GTEX-PWO3-0011-R2A-SM-2S1OX
60-69 years, female
138.0
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
136.2
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
136.1
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
135.4
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
135.4
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
135.0
GTEX-1IKOH-0011-R2a-SM-CMKHO
60-69 years, female
134.1
GTEX-T5JC-0011-R2A-SM-32PLZ
20-29 years, male
134.0
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
133.8
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
130.2
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
128.4
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
127.7
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
125.1
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
124.0
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
122.3
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
122.2
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
121.8
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
120.6
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
120.4
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
118.9
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
118.6
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
116.5
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
115.6
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
113.2
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
112.8
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
112.6
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
110.4
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
107.5
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
106.9
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
105.4
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
104.0
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
103.9
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
103.8
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
102.3
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
101.7
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
101.5
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
100.5
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
98.5
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
96.9
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
96.8
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
96.2
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
95.9
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
95.4
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
94.1
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
93.8
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
92.3
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
92.3
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
90.3
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
89.9
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
89.6
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
87.8
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
87.6
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
86.8
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
84.9
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
83.9
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
83.0
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
81.2
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
81.2
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
80.4
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
80.1
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
79.3
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
75.7
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
74.8
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
74.3
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
74.1
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
72.5
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
71.2
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
70.7
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
68.8
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
67.5
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
66.8
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
65.4
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
64.2
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
59.6
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
59.1
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
57.0
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
56.7
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
55.2
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
54.0
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
53.5
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
49.3
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
47.4
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
47.4
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
45.8
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
43.8
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
39.5
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
38.0
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
37.9
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
36.7
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
36.0
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
34.7
GTEX-NPJ8-0011-R2a-SM-2TC6M
40-49 years, male
34.6
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
28.6
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MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
28.3
Mouse sample
Sample description
nTPM
Midbrain nTPM: 28.3
Samples: 4
Max nTPM: 29.5
Min nTPM: 26.9
Sample A
Male
29.3
Sample B
Male
26.9
Sample C
Female
29.5
Sample D
Female
27.3
MIDBRAIN - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.