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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
h
m
l
n
Ganglion cells :
Not detected
Inner nuclear layer:
Not detected
Inner plexiform layer:
Not detected
Limiting membrane:
Not detected
Nerve fiber layer:
Not detected
Outer plexiform layer:
Not detected
Photoreceptor cells:
High
Pigment epithelial cells:
Not detected
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
648.0
nTPM
GTEx:
648.0
nTPM
FANTOM5:
75.8
Scaled Tags Per Million
Pig:
1361.0
nTPM
Mouse:
7806.9
nTPM
RETINA - Extended tissue profilei
For selected proteins extended tissue profiling is performed in addition to standard tissue microarrays. The section below contains results from the extended profiling.
, antibody HPA062235
Pigment epithelial cells
Not detected
Immunohistochemical staining of retina shows strong cytoplasmic and nuclear positivity in photoreceptor layer.
100 ฮผm
Photoreceptor cells
High
Limiting membrane
Not detected
Outer plexiform layer
Not detected
Inner nuclear layer
Not detected
Inner plexiform layer
Not detected
Ganglion cells
Not detected
Nerve fiber layer
Not detected
RETINA - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
648.0
GTEx sample id
Sample description
nTPM
Retina Average nTPM: 648.0
Samples: 105
Max nTPM: 1202.9
Min nTPM: 241.2
Std nTPM: 224.8
Median nTPM:
414_1
84 years, female
1202.9
518_1
75 years, female
1190.0
491_1
89 years, female
1188.5
149_1
88 years, male
1183.3
413_1
59 years, female
1155.1
466_1
57 years, female
1108.2
139_1
64 years, female
1102.9
246_1
77 years, male
1073.0
322_1
76 years, male
1049.9
490_1
67 years, female
1017.9
415_1
77 years, female
1002.9
126_1
63 years, male
954.2
377_1
82 years, female
943.9
468_1
89 years, male
940.0
217_1
76 years, male
939.4
389_1
86 years, female
939.2
162_1
79 years, female
922.5
43_1
64 years, female
911.8
266_1
85 years, male
896.5
153_1
70 years, female
852.5
81_1
67 years, male
831.2
316_1
62 years, male
818.7
265_1
87 years, male
790.6
251_1
78 years, male
789.5
32_1
67 years, male
774.2
35_1
74 years, female
764.9
320_1
89 years, female
763.0
404_1
82 years, female
762.5
526_1
61 years, male
727.7
115_1
83 years, male
726.2
254_1
77 years, female
714.6
425_1
59 years, female
686.2
503_1
68 years, male
680.8
89_1
63 years, male
680.6
17_1
71 years, male
677.8
501_1
88 years, male
674.5
229_1
69 years, female
671.4
18_1
88 years, male
665.6
109_1
81 years, female
660.3
495_1
57 years, female
654.9
9_1
66 years, female
654.8
394_1
75 years, female
651.7
142_1
61 years, female
649.7
405_1
91 years, male
647.9
318_1
68 years, male
647.2
375_1
74 years, female
646.5
4_1
88 years, female
638.8
315_1
62 years, female
631.4
396_1
62 years, male
628.6
499_1
55 years, female
618.8
293_1
68 years, female
601.9
480_1
63 years, male
596.3
376_1
75 years, female
595.0
2_1
77 years, female
592.3
117_1
61 years, male
587.3
292_1
71 years, male
586.4
313_1
79 years, female
586.2
517_1
88 years, male
576.9
288_1
66 years, female
576.2
6_1
73 years, female
576.0
189_1
76 years, male
576.0
319_1
81 years, male
575.4
137_1
83 years, male
573.5
324_1
76 years, male
573.2
307_1
66 years, female
571.3
145_1
84 years, male
570.9
355_1
70 years, female
559.6
237_1
82 years, male
555.4
384_1
83 years, male
547.6
386_1
76 years, male
541.4
335_1
73 years, female
530.3
406_1
79 years, male
527.7
42_1
85 years, male
524.0
352_1
62 years, male
522.7
120_1
70 years, female
517.4
314_1
67 years, male
489.3
264_1
73 years, female
488.7
163_1
78 years, male
486.1
243_1
75 years, male
485.0
172_1
72 years, female
483.7
311_1
78 years, male
483.0
291_1
76 years, male
480.9
321_1
62 years, female
475.3
119_1
70 years, female
467.7
349_1
83 years, male
464.8
356_1
87 years, female
461.2
347_1
72 years, male
441.9
348_1
84 years, male
437.4
177_1
74 years, male
426.5
99_1
64 years, male
424.3
295_1
61 years, female
417.4
286_1
68 years, female
412.4
447_1
81 years, male
411.8
379_1
60 years, male
411.7
354_1
81 years, female
404.5
41_1
94 years, female
403.6
351_1
91 years, male
383.1
350_1
84 years, female
371.6
452_1
88 years, female
343.1
173_1
67 years, male
340.5
353_1
82 years, female
335.9
218_1
71 years, female
334.3
506_1
65 years, male
324.9
317_1
60 years, male
257.4
308_1
70 years, female
241.2
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RETINA - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.