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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
HPA Brain:
40.8
nTPM
FANTOM5:
83.7
Scaled Tags Per Million
Pig:
15.0
nTPM
Mouse:
47.5
nTPM
Allen mouse:
1.3
Expression energy
PONS AND MEDULLA - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Ventrolateral medulla, A1-C1 cell groups nTPM: 33.6
2302
Female, age 91, both hemispheres
38.9
1986
Male, age 76, both hemispheres
33.3
2118
Male, age 80, both hemispheres
32.0
2180
Male, age 61, both hemispheres
31.9
2741
Female, age 85, both hemispheres
31.8
Ventrolateral tegmental area, A5 NE cell group nTPM: 29.2
2359
Male, age 61, both hemispheres
33.9
1959
Male, age 76, both hemispheres
32.3
2840
Female, age 85, both hemispheres
31.8
2161
Male, age 80, both hemispheres
27.8
2456
Female, age 91, both hemispheres
25.4
2449
Male, age 74, both hemispheres
24.0
PONS AND MEDULLA - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
47.5
Mouse sample
Sample description
nTPM
Pons and medulla nTPM: 47.5
Samples: 4
Max nTPM: 51.1
Min nTPM: 44.4
Sample A
Male
45.0
Sample B
Male
49.4
Sample C
Female
44.4
Sample D
Female
51.1
PONS AND MEDULLA - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.