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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
h
m
l
n
Glial cells:
Medium
Neuronal cells:
Medium
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
38.3
nTPM
HPA Brain:
37.9
nTPM
GTEx:
38.3
nTPM
FANTOM5:
102.1
Scaled Tags Per Million
Pig:
14.6
nTPM
Mouse:
51.0
nTPM
Allen mouse:
3.7
Expression energy
HIPPOCAMPUS - Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
Antibody HPA044850
Glial cells
Medium
Neuronal cells
Medium
HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
37.9
Sample id
Sample description
nTPM
Hippocampus nTPM: 35.6
1898
Male, age 80, left hemisphere
39.5
2148
Female, age 91, left hemisphere
38.1
1911
Female, age 85, right hemisphere
36.0
1855
Male, age 76, left hemisphere
35.4
2529
Female, age 94, left hemisphere
33.5
2621
Female, age 67, right hemisphere
31.1
Dentate gyrus nTPM: 35.2
1927
Female, age 91, both hemispheres
37.3
2528
Male, age 74, both hemispheres
36.9
2246
Female, age 85, both hemispheres
36.1
2010
Male, age 76, both hemispheres
36.0
2530
Female, age 94, left hemisphere
33.0
2531
Female, age 67, both hemispheres
31.9
Entorhinal gyrus nTPM: 30.0
2117
Female, age 91, right hemisphere
35.1
1938
Female, age 85, left hemisphere
31.8
1787
Male, age 76, left hemisphere
30.6
2764
Male, age 80, right hemisphere
28.4
2686
Male, age 75, right hemisphere
27.9
2613
Female, age 94, left hemisphere
26.0
Hippocampus, CA1 nTPM: 37.9
1873
Female, age 85, both hemispheres
43.3
2045
Male, age 76, both hemispheres
39.5
2749
Male, age 80, left hemisphere
38.4
2082
Female, age 91, right hemisphere
34.5
2527
Male, age 74, both hemispheres
33.8
Hippocampus, CA2 nTPM: 32.2
1892
Male, age 76, both hemispheres
38.1
2113
Female, age 91, right hemisphere
33.6
2249
Male, age 74, both hemispheres
32.7
1963
Male, age 80, left hemisphere
30.6
1940
Female, age 85, left hemisphere
29.9
2437
Female, age 94, left hemisphere
28.4
Hippocampus, CA3 nTPM: 35.7
2620
Female, age 94, left hemisphere
40.6
2137
Male, age 80, left hemisphere
36.9
1867
Male, age 76, both hemispheres
36.3
1891
Female, age 85, both hemispheres
36.3
2436
Male, age 74, both hemispheres
32.8
2861
Female, age 67, both hemispheres
31.5
Parahippocampal cortex nTPM: 31.5
1850
Male, age 80, both hemispheres
36.6
2622
Female, age 67, right hemisphere
34.3
2250
Female, age 67, right hemisphere
31.9
2692
Male, age 74, both hemispheres
31.9
2245
Female, age 91, both hemispheres
31.7
2018
Male, age 76, both hemispheres
31.3
1990
Female, age 91, right hemisphere
30.3
1933
Female, age 85, both hemispheres
29.7
2532
Female, age 72, left hemisphere
29.1
2693
Female, age 94, both hemispheres
27.8
Perirhinal gyrus nTPM: 32.6
1847
Female, age 91, left hemisphere
34.9
2521
Female, age 94, right hemisphere
33.5
1841
Female, age 85, right hemisphere
33.0
2848
Male, age 76, right hemisphere
31.0
1794
Male, age 80, right hemisphere
30.3
Subiculum nTPM: 31.4
2729
Female, age 91, right hemisphere
35.2
1977
Female, age 85, both hemispheres
31.9
1901
Male, age 80, both hemispheres
31.2
2619
Male, age 74, both hemispheres
31.0
2042
Male, age 76, both hemispheres
29.8
2438
Female, age 94, left hemisphere
29.3
HIPPOCAMPAL FORMATION - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
38.3
GTEx sample id
Sample description
nTPM
Brain - Hippocampus Average nTPM: 38.3
Samples: 197
Max nTPM: 64.9
Min nTPM: 22.2
Std nTPM: 7.2
Median nTPM: 37.5
GTEX-QMR6-0011-R1A-SM-32PKW
50-59 years, male
64.9
GTEX-1IY9M-0011-R1a-SM-EXURZ
60-69 years, male
64.6
GTEX-Y8DK-0011-R1A-SM-4RGLO
60-69 years, male
56.7
GTEX-1J8Q2-0011-R1a-SM-D4P2D
60-69 years, male
56.6
GTEX-1A3MX-0011-R1b-SM-7P8PH
60-69 years, male
56.4
GTEX-14LLW-0011-R1a-SM-5ZZVD
70-79 years, female
54.7
GTEX-1J1OQ-0011-R1a-SM-A9G1Z
40-49 years, female
53.2
GTEX-1GMR8-0011-R1b-SM-CJI2O
50-59 years, female
52.9
GTEX-S7SE-0011-R1A-SM-2XCDE
50-59 years, male
52.4
GTEX-131YS-0011-R1a-SM-5DUXC
60-69 years, female
52.3
GTEX-1HT8W-0011-R1b-SM-CJI3V
30-39 years, male
52.1
GTEX-1F75W-0011-R1a-SM-ARU81
60-69 years, male
51.9
GTEX-PWO3-0011-R1A-SM-2I5EW
60-69 years, female
51.5
GTEX-11GSP-0011-R1a-SM-9QEJ3
60-69 years, female
51.4
GTEX-NPJ7-0011-R1a-SM-3GACT
60-69 years, female
51.3
GTEX-1CAV2-0011-R1a-SM-ARZML
40-49 years, female
51.3
GTEX-131XH-0011-R1a-SM-5DUWA
50-59 years, male
50.6
GTEX-11GS4-0011-R1a-SM-DO129
60-69 years, male
48.9
GTEX-1CB4J-0011-R1a-SM-9WG64
60-69 years, male
48.5
GTEX-144GL-0011-R1a-SM-5PNZ5
50-59 years, male
47.7
GTEX-T5JC-0011-R1A-SM-32PM6
20-29 years, male
47.2
GTEX-R55E-0011-R1A-SM-2TC6N
20-29 years, male
47.1
GTEX-145LU-0011-R1a-SM-5Q5CE
50-59 years, male
46.9
GTEX-1B933-0011-R1b-SM-9QEGW
50-59 years, female
45.8
GTEX-144GO-0011-R1a-SM-5PNWO
60-69 years, male
45.5
GTEX-1F75A-0011-R1b-SM-CE6RA
50-59 years, male
45.5
GTEX-14ABY-0011-R1a-SM-6EU2W
50-59 years, male
45.2
GTEX-13OVJ-0011-R1b-SM-5L3I6
50-59 years, female
44.7
GTEX-14PN4-0011-R1b-SM-69LP8
50-59 years, male
44.7
GTEX-1B8L1-0011-R1a-SM-7P8SS
60-69 years, male
44.7
GTEX-1ICLZ-0011-R1b-SM-A9SM3
60-69 years, male
44.7
GTEX-1B996-0011-R1b-SM-7P8PO
60-69 years, male
44.5
GTEX-11ZTS-0011-R1a-SM-5BC71
60-69 years, female
44.1
GTEX-14BIM-0011-R1a-SM-69LQI
60-69 years, female
43.5
GTEX-1H1ZS-0011-R1b-SM-A9G1E
70-79 years, male
43.5
GTEX-139T8-0011-R1a-SM-5HL75
60-69 years, male
43.4
GTEX-14PJO-0011-R1b-SM-6AJAK
60-69 years, male
43.2
GTEX-1EWIQ-0011-R1a-SM-9OSX7
70-79 years, female
43.2
GTEX-11GSO-0011-R1b-SM-57WD3
60-69 years, male
43.1
GTEX-QVUS-0011-R1A-SM-3GAD2
60-69 years, female
43.1
GTEX-1HSKV-0011-R1b-SM-CMKH7
60-69 years, male
43.0
GTEX-13O3Q-0011-R1b-SM-5KM3L
50-59 years, male
42.8
GTEX-17JCI-0011-R1b-SM-718A3
60-69 years, female
42.8
GTEX-12ZZX-0011-R1a-SM-5EQ6B
40-49 years, female
42.7
GTEX-1H4P4-0011-R1b-SM-CL54V
50-59 years, male
42.7
GTEX-1LG7Y-0011-R1a-SM-EYYWV
50-59 years, male
42.6
GTEX-12WSH-0011-R1a-SM-5GU5V
50-59 years, male
42.4
GTEX-13FHP-0011-R1b-SM-5K7XL
50-59 years, male
42.3
GTEX-13NYB-0011-R1b-SM-5KM4F
40-49 years, male
42.3
GTEX-1IOXB-0011-R1a-SM-D4P27
50-59 years, male
42.3
GTEX-11ZVC-0011-R1b-SM-5BC6M
50-59 years, female
42.2
GTEX-11DXW-0011-R1a-SM-DNZZD
40-49 years, male
42.2
GTEX-1BAJH-0011-R1a-SM-7P8SV
70-79 years, male
41.9
GTEX-1IKK5-0011-R1b-SM-CE6SQ
60-69 years, male
41.9
GTEX-P44G-0011-R1A-SM-2I3FE
30-39 years, male
41.4
GTEX-145MH-0011-R1b-SM-5PNWY
50-59 years, male
41.2
GTEX-1A32A-0011-R1a-SM-7P8SQ
50-59 years, female
41.2
GTEX-13CF2-0011-R1a-SM-5LZY1
60-69 years, male
41.1
GTEX-14C5O-0011-R1b-SM-6AJBW
60-69 years, male
41.1
GTEX-1399T-0011-R1b-SM-5DUWN
60-69 years, male
41.0
GTEX-14PJM-0011-R1a-SM-CNPO3
50-59 years, female
41.0
GTEX-13FHO-0011-R1b-SM-5KLZG
60-69 years, male
40.9
GTEX-ZVZQ-0011-R1a-SM-57WBU
60-69 years, female
40.7
GTEX-14PQA-0011-R1b-SM-6EU1G
50-59 years, female
40.6
GTEX-13OW8-0011-R1a-SM-5L3HI
60-69 years, male
40.5
GTEX-ZUA1-0011-R1a-SM-4YCE2
40-49 years, male
40.5
GTEX-11TUW-0011-R1a-SM-DO92S
60-69 years, male
40.3
GTEX-1CB4G-0011-R1b-SM-9QEHT
60-69 years, male
40.3
GTEX-13NYS-0011-R1b-SM-5MR55
60-69 years, male
40.1
GTEX-15ER7-0011-R1b-SM-7KUE1
20-29 years, female
40.1
GTEX-X585-0011-R1B-SM-46MVE
50-59 years, male
40.1
GTEX-12WSM-0011-R1a-SM-5LZW6
60-69 years, male
40.0
GTEX-13O3O-0011-R1b-SM-5KM2K
60-69 years, female
39.9
GTEX-13SLW-0011-R1a-SM-5S2W7
70-79 years, male
39.9
GTEX-WZTO-0011-R1B-SM-3NMAR
40-49 years, male
39.9
GTEX-QDT8-0011-R1A-SM-32PKS
30-39 years, female
39.8
GTEX-16NPV-0011-R1b-SM-7MGVZ
50-59 years, female
39.6
GTEX-YFC4-0011-R1a-SM-4V6EH
40-49 years, female
39.3
GTEX-1F48J-0011-R1a-SM-9QEIC
50-59 years, female
39.2
GTEX-16YQH-0011-R1a-SM-7LT8R
30-39 years, male
39.1
GTEX-1GTWX-0011-R1a-SM-CE6RL
60-69 years, male
38.9
GTEX-YJ89-0011-R1a-SM-4RGLS
60-69 years, male
38.8
GTEX-1313W-0011-R1b-SM-5EQ4A
50-59 years, female
38.5
GTEX-13FTY-0011-R1a-SM-5LZXE
40-49 years, female
38.5
GTEX-NPJ8-0011-R1a-SM-33HCB
40-49 years, male
38.5
GTEX-13FLW-0011-R1b-SM-5LZX2
50-59 years, male
38.4
GTEX-UTHO-0011-R1A-SM-3GIJO
60-69 years, male
38.4
GTEX-1F6I4-0011-R1a-SM-9OSWU
60-69 years, male
38.4
GTEX-WWYW-0011-R1A-SM-3TW8G
50-59 years, female
38.2
GTEX-13X6I-0011-R1b-SM-5PNZC
60-69 years, male
38.1
GTEX-183WM-0011-R1a-SM-718A8
70-79 years, female
38.1
GTEX-1A8G6-0011-R1a-SM-7P8PC
60-69 years, male
38.0
GTEX-ZAB4-0011-R1a-SM-4RGNO
40-49 years, male
37.9
GTEX-1C64N-0011-R1b-SM-7P8Q7
50-59 years, male
37.9
GTEX-Q2AG-0011-R1A-SM-2HMJI
40-49 years, female
37.8
GTEX-1C6VR-0011-R1a-SM-7MXUE
60-69 years, male
37.8
GTEX-14JIY-0011-R1a-SM-68713
60-69 years, male
37.7
GTEX-1GF9V-0011-R1a-SM-CKZNQ
60-69 years, male
37.6
GTEX-17F97-0011-R1b-SM-7IGM9
50-59 years, male
37.5
GTEX-1H1DG-0011-R1b-SM-CKZP1
70-79 years, male
37.5
GTEX-13FXS-0011-R1a-SM-5K7U6
50-59 years, male
37.4
GTEX-ZDXO-0011-R1a-SM-4WKF4
60-69 years, male
37.4
GTEX-1E1VI-0011-R1a-SM-ARZMM
50-59 years, male
37.1
GTEX-1EKGG-0011-R1b-SM-9QEI1
60-69 years, male
37.1
GTEX-15DCD-0011-R1b-SM-6LPIJ
70-79 years, female
37.0
GTEX-17HG3-0011-R1a-SM-7LG6H
30-39 years, female
37.0
GTEX-13OW7-0011-R1b-SM-5L3HF
50-59 years, male
36.9
GTEX-1GN73-0011-R1a-SM-CKZNT
60-69 years, male
36.9
GTEX-12WSE-0011-R1b-SM-5GU4V
20-29 years, male
36.8
GTEX-1I1GS-0011-R1a-SM-CJI43
60-69 years, male
36.6
GTEX-RNOR-0011-R1A-SM-CNNP5
50-59 years, female
36.6
GTEX-13N2G-0011-R1b-SM-5MR3G
60-69 years, male
36.5
GTEX-N7MS-0011-R1a-SM-2HMJG
60-69 years, male
36.5
GTEX-139TT-0011-R1a-SM-5LZVD
60-69 years, male
36.4
GTEX-1H3VE-0011-R1a-SM-A9G1K
40-49 years, male
36.4
GTEX-15CHQ-0011-R1a-SM-COH27
60-69 years, male
36.3
GTEX-1GF9W-0011-R1a-SM-9QEIQ
60-69 years, male
36.2
GTEX-WHSE-0011-R1A-SM-3P5ZK
20-29 years, male
36.0
GTEX-1H1CY-0011-R1a-SM-CKZOZ
60-69 years, female
36.0
GTEX-13RTJ-0011-R1a-SM-5O9D9
60-69 years, male
35.9
GTEX-WVLH-0011-R1A-SM-4MVOK
50-59 years, male
35.7
GTEX-145LS-0011-R1b-SM-5PNUP
60-69 years, female
35.6
GTEX-QVJO-0011-R1A-SM-2S1QI
60-69 years, female
35.5
GTEX-1AX9I-0011-R1b-SM-7RHG2
60-69 years, male
35.4
GTEX-1LB8K-0011-R1b-SM-EZ6MV
50-59 years, male
35.4
GTEX-13QJC-0011-R1b-SM-5S2UU
60-69 years, female
35.3
GTEX-WL46-0011-R1A-SM-3LK6M
50-59 years, male
35.3
GTEX-13OW6-0011-R1a-SM-5L3HQ
50-59 years, male
35.2
GTEX-PVOW-0011-R1A-SM-32PL6
40-49 years, male
35.1
GTEX-1H3O1-0011-R1b-SM-CL554
60-69 years, male
35.1
GTEX-13G51-0011-R1a-SM-5LZYR
60-69 years, male
35.0
GTEX-1F6IF-0011-R1b-SM-9WG78
60-69 years, male
35.0
GTEX-132Q8-0011-R1a-SM-5EGLK
60-69 years, male
34.9
GTEX-1B8SF-0011-R1b-SM-7P8Q8
60-69 years, male
34.9
GTEX-1C6VQ-0011-R1a-SM-7P8Q2
50-59 years, male
34.9
GTEX-11EI6-0011-R1a-SM-DO93L
60-69 years, male
34.8
GTEX-1HBPI-0011-R1b-SM-A9SKF
50-59 years, male
34.6
GTEX-1I1GV-0011-R1a-SM-CL559
60-69 years, male
34.6
GTEX-11ONC-0011-R1a-SM-57WD4
60-69 years, male
34.3
GTEX-14E7W-0011-R1b-SM-5YYAT
70-79 years, male
34.3
GTEX-1EMGI-0011-R1b-SM-9OSWZ
60-69 years, male
34.2
GTEX-TSE9-0011-R1A-SM-3DB7E
60-69 years, female
34.0
GTEX-1EX96-0011-R1a-SM-CE6R5
50-59 years, male
34.0
GTEX-14ASI-0011-R1b-SM-5S2TY
60-69 years, male
33.9
GTEX-ZF28-0011-R1a-SM-4WWD1
60-69 years, male
33.9
GTEX-14E6D-0011-R1b-SM-5YYAW
50-59 years, male
33.7
GTEX-17HHY-0011-R1a-SM-7189V
50-59 years, male
33.7
GTEX-13OW5-0011-R1b-SM-5L3GE
60-69 years, male
33.6
GTEX-11UD1-0011-R1b-SM-5BC7D
40-49 years, female
33.5
GTEX-1IDJH-0011-R1b-SM-ARU6U
70-79 years, male
33.4
GTEX-1HSMO-0011-R1a-SM-CM2SV
60-69 years, male
33.3
GTEX-X4EP-0011-R1A-SM-3P624
60-69 years, female
33.1
GTEX-X4XX-0011-R1B-SM-3P622
60-69 years, male
32.9
GTEX-1HGF4-0011-R1a-SM-CJI3S
60-69 years, male
32.9
GTEX-12WSD-0011-R1b-SM-5LZVY
60-69 years, female
32.8
GTEX-13112-0011-R1b-SM-5HL7K
50-59 years, male
32.8
GTEX-13NZ8-0011-R1b-SM-5KM3V
60-69 years, female
32.8
GTEX-1I1GQ-0011-R1a-SM-CY8GG
50-59 years, male
32.7
GTEX-16Z82-0011-R1b-SM-7EPHZ
60-69 years, male
32.5
GTEX-13PDP-0011-R1a-SM-5PNX5
60-69 years, male
32.3
GTEX-1H23P-0011-R1a-SM-ACKVC
60-69 years, male
32.3
GTEX-13NZA-0011-R1b-SM-5LUAF
60-69 years, male
32.2
GTEX-13RTL-0011-R1a-SM-5PNZ8
40-49 years, male
32.0
GTEX-1I1HK-0011-R1b-SM-CM2T7
60-69 years, male
32.0
GTEX-OHPN-0011-R1A-SM-2I5GB
60-69 years, female
31.6
GTEX-17EVQ-0011-R1a-SM-7189S
70-79 years, male
31.4
GTEX-12WSF-0011-R1a-SM-5DUVI
70-79 years, male
31.2
GTEX-16GPK-0011-R1b-SM-7EWDH
60-69 years, male
30.9
GTEX-18A6Q-0011-R1b-SM-731DI
60-69 years, male
30.8
GTEX-13JUV-0011-R1a-SM-5LZY4
40-49 years, female
30.6
GTEX-N7MT-0011-R1a-SM-CNPO1
60-69 years, female
30.5
GTEX-1212Z-0011-R1b-SM-5BC72
60-69 years, male
30.4
GTEX-NL3H-0011-R1a-SM-48TDJ
60-69 years, male
30.4
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y
40-49 years, male
30.4
GTEX-P44H-0011-R1A-SM-3NM8J
40-49 years, male
29.9
GTEX-1GZHY-0011-R1a-SM-CE6RR
50-59 years, female
29.8
GTEX-13OVL-0011-R1a-SM-5L3H5
50-59 years, male
29.5
GTEX-13JVG-0011-R1a-SM-5KM32
60-69 years, male
29.4
GTEX-13QIC-0011-R1a-SM-5O9CJ
60-69 years, female
29.3
GTEX-ZE7O-0011-R1a-SM-57WDM
50-59 years, female
29.3
GTEX-15UF6-0011-R1a-SM-9QEGH
70-79 years, female
29.3
GTEX-XMD1-0011-R1A-SM-4AT4C
60-69 years, male
29.1
GTEX-13S7M-0011-R1b-SM-5PNZE
60-69 years, female
28.7
GTEX-1HR98-0011-R1a-SM-ARZLQ
60-69 years, male
28.6
GTEX-13N1W-0011-R1b-SM-5MR4T
70-79 years, male
28.1
GTEX-17EVP-0011-R1a-SM-7DHLA
40-49 years, male
27.8
GTEX-T6MN-0011-R1A-SM-32QOY
50-59 years, male
27.8
GTEX-1GN2E-0011-R1b-SM-CE6RJ
60-69 years, male
27.7
GTEX-1EH9U-0011-R1b-SM-CJI2B
60-69 years, male
27.5
GTEX-1E2YA-0011-R1b-SM-CJI29
50-59 years, male
27.4
GTEX-14LZ3-0011-R1a-SM-69LP5
60-69 years, female
26.8
GTEX-17HII-0011-R1b-SM-7MGVW
50-59 years, male
26.3
GTEX-17MF6-0011-R1a-SM-72D6O
40-49 years, male
26.0
GTEX-1H3NZ-0011-R1a-SM-CKZP5
60-69 years, male
26.0
GTEX-11WQC-0011-R1b-SM-DO932
60-69 years, male
25.7
GTEX-1GN1U-0011-R1a-SM-CJI25
50-59 years, female
25.7
GTEX-16XZZ-0011-R1a-SM-7LTAH
60-69 years, male
22.2
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
51.0
Mouse sample
Sample description
nTPM
Entorhinal cortex nTPM: 46.1
Samples: 4
Max nTPM: 52.2
Min nTPM: 40.4
Sample A
Male
41.7
Sample B
Male
52.2
Sample C
Female
50.1
Sample D
Female
40.4
Hippocampal formation nTPM: 51.0
Samples: 4
Max nTPM: 54.3
Min nTPM: 46.0
Sample A
Male
54.3
Sample B
Male
53.2
Sample C
Female
46.0
Sample D
Female
50.5
HIPPOCAMPAL FORMATION - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.