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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
NPRL2 is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
10.1
Number of samples
362
Samples
Sample
Description
TPM
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
25.1
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
24.4
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
24.2
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
23.2
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
19.8
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
19.7
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
19.7
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
19.2
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
18.7
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
18.7
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
18.2
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
18.1
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
17.8
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
17.7
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
17.3
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
17.3
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
16.8
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
16.7
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
16.6
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
16.6
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
16.4
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
16.3
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
16.3
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
16.3
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
16.1
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
15.9
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
15.9
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
15.8
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
15.8
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
15.6
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
15.6
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
15.5
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
15.3
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
15.2
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
15.2
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
15.1
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
15.1
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
15.1
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
15.0
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
14.8
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
14.7
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
14.7
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
14.6
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
14.6
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
14.6
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
14.4
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
14.3
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
14.2
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
14.2
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
14.1
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
14.0
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
13.9
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
13.9
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
13.9
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
13.8
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
13.8
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
13.6
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
13.6
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
13.6
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
13.6
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
13.5
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
13.5
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
13.4
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
13.4
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
13.4
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
13.3
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
13.3
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
13.2
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
13.2
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
13.2
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
13.1
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
13.0
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
13.0
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
12.9
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
12.7
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
12.7
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
12.6
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
12.6
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
12.5
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
12.5
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
12.5
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
12.4
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
12.3
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
12.3
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
12.3
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
12.2
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
12.2
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
12.2
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
12.2
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
12.2
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
12.1
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
12.1
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
12.1
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
12.1
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
12.1
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
12.1
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
12.0
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
12.0
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
12.0
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
12.0
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
12.0
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
12.0
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
11.9
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
11.9
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
11.8
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
11.7
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
11.7
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
11.6
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
11.6
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
11.5
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
11.5
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
11.4
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
11.4
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
11.4
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
11.4
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
11.4
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
11.3
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
11.3
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
11.2
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
11.2
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
11.2
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
11.2
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
11.1
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
11.1
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
11.0
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
11.0
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
10.9
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
10.9
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
10.9
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
10.9
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
10.9
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
10.9
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
10.8
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
10.8
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
10.8
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
10.7
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
10.7
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
10.7
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
10.7
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
10.7
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
10.6
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
10.6
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
10.5
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
10.5
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
10.5
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
10.5
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
10.4
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
10.4
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
10.4
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
10.4
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
10.4
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
10.4
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
10.3
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
10.2
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
10.2
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
10.1
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
10.1
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
10.0
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
10.0
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
10.0
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
10.0
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
10.0
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
9.9
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
9.9
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
9.9
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
9.9
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
9.9
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
9.9
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
9.8
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
9.8
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
9.8
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
9.8
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
9.8
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
9.8
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
9.8
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
9.7
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
9.7
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
9.7
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
9.7
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
9.7
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
9.7
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
9.6
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
9.6
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
9.6
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
9.6
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
9.5
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
9.5
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
9.5
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
9.5
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
9.5
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
9.5
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
9.5
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
9.5
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
9.5
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
9.4
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
9.4
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
9.4
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
9.3
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
9.2
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
9.1
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
9.1
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
9.1
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
9.1
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
9.1
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
9.1
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
9.1
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
9.0
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
9.0
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
9.0
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
9.0
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
9.0
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
9.0
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
8.9
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
8.9
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
8.9
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
8.9
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
8.8
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
8.8
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
8.8
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
8.7
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
8.7
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
8.6
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
8.6
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
8.5
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
8.5
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
8.5
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
8.4
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
8.4
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
8.4
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
8.3
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
8.3
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
8.3
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
8.3
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
8.3
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
8.3
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
8.3
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
8.2
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
8.2
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
8.2
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
8.2
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
8.2
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
8.2
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
8.1
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
8.1
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
8.1
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
8.1
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
8.1
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
8.1
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
8.1
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
8.1
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
8.0
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
8.0
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
8.0
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
8.0
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
8.0
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
8.0
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
8.0
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
8.0
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
8.0
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
8.0
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
7.9
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
7.9
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
7.9
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
7.9
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
7.8
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
7.8
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
7.8
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
7.8
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
7.8
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
7.8
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
7.8
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
7.7
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
7.7
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
7.7
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
7.7
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
7.6
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
7.6
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
7.6
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
7.6
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
7.5
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
7.5
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
7.5
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
7.5
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
7.5
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
7.4
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
7.4
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
7.4
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
7.4
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
7.4
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
7.4
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
7.4
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
7.4
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
7.3
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
7.3
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
7.3
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
7.3
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
7.3
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
7.3
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
7.2
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
7.2
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
7.2
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
7.2
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
7.2
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
7.2
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
7.2
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
7.2
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
7.1
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
7.1
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
7.1
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
7.1
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
6.9
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
6.9
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
6.9
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
6.8
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
6.8
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
6.7
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
6.7
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
6.6
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
6.6
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
6.6
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
6.5
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
6.5
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
6.5
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
6.4
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
6.4
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
6.4
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
6.2
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
6.2
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
5.9
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
5.9
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
5.7
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
5.7
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
5.7
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
5.5
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
5.4
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
5.4
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
5.3
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
5.3
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
5.2
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
5.2
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
5.1
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
5.0
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
5.0
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
5.0
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
4.9
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
4.8
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
4.8
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
4.7
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
4.6
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
4.6
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
4.5
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
4.2
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
4.1
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
4.0
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
3.9
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
3.9
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
3.7
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
3.7
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
3.7
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
3.5
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
3.3
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
NPRL2 is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
12.2
Number of samples
231
Samples
Sample
Description
TPM
DO45149
0 years, female, NA, stage:2, alive, 1260 days
27.4
DO45241
0 years, male, NA, stage:1, alive, 1080 days
24.8
DO23508
0 years, female, NA, stage:2, alive, 390 days
24.5
DO48715
0 years, female, NA, stage:2, dead, 690 days
24.0
DO23521
0 years, male, NA, stage:3, alive, 1110 days
22.9
DO23533
0 years, male, NA, stage:2, alive, 900 days
22.3
DO48697
0 years, female, NA, stage:2, dead, 810 days
22.0
DO45209
0 years, male, NA, stage:4, alive, 1350 days
21.4
DO50815
0 years, male, NA, stage:3, alive, 150 days
21.1
DO50845
0 years, male, NA, stage:3, alive, 210 days
20.3
DO23516
0 years, male, NA, stage:3, dead, 20 days
19.7
DO50806
0 years, male, NA, stage:4, alive, 540 days
19.6
DO48730
0 years, female, NA, stage:2, alive, 630 days
19.4
DO45285
0 years, male, NA, stage:3, alive, 480 days
19.3
DO48747
0 years, male, NA, stage:3, alive, 540 days
19.2
DO23548
0 years, female, NA, stage:1, alive, 840 days
19.1
DO48723
0 years, male, NA, stage:1, alive, 600 days
19.0
DO23528
0 years, female, NA, stage:2, alive, 1020 days
18.5
DO48759
0 years, male, NA, stage:3, alive, 720 days
18.4
DO45185
0 years, male, NA, stage:2, alive, 600 days
18.3
DO45145
0 years, male, NA, stage:3, dead, 60 days
18.3
DO50813
0 years, male, NA, stage:2, alive, 420 days
18.3
DO50785
0 years, male, NA, stage:4, dead, 90 days
18.3
DO45217
0 years, female, NA, stage:3, dead, 270 days
18.2
DO50839
0 years, female, NA, stage:3, alive, 330 days
18.1
DO45105
0 years, male, NA, stage:1, alive, 1680 days
18.1
DO45269
0 years, male, NA, stage:3, alive, 750 days
17.8
DO23547
0 years, male, NA, stage:1, alive, 1020 days
17.7
DO45097
0 years, male, NA, stage:3, alive, 1620 days
17.6
DO50855
0 years, male, NA, stage:2, alive, 570 days
17.2
DO23537
0 years, male, NA, stage:2, dead, 900 days
17.2
DO45092
0 years, male, NA, stage:4, dead, 1200 days
17.1
DO50791
0 years, female, NA, stage:1, dead, 480 days
17.0
DO45273
0 years, male, NA, stage:2, alive, 480 days
16.6
DO50811
0 years, male, NA, stage:1, alive, 450 days
16.3
DO23532
0 years, female, NA, stage:1, alive, 960 days
16.2
DO45125
0 years, male, NA, stage:3, alive, 1680 days
16.2
DO50799
0 years, female, NA, stage:2, alive, 540 days
16.1
DO48736
0 years, female, NA, stage:1, alive, 600 days
16.0
DO50829
0 years, male, NA, stage:3, alive, 570 days
15.5
DO23519
0 years, male, NA, stage:3, alive, 630 days
15.3
DO48717
0 years, male, NA, stage:4, dead, 180 days
15.3
DO45307
0 years, female, NA, stage:4, dead, 240 days
15.2
DO23526
0 years, male, NA, stage:3, alive, 1050 days
15.0
DO48682
0 years, female, NA, stage:3, dead, 120 days
14.9
DO45193
0 years, female, NA, stage:4, dead, 120 days
14.8
DO45119
0 years, male, NA, stage:3, dead, 510 days
14.8
DO23546
0 years, male, NA, stage:2, alive, 1050 days
14.8
DO45161
0 years, male, NA, stage:2, dead, 540 days
14.7
DO45205
0 years, female, NA, stage:2, dead, 90 days
14.7
DO50802
0 years, male, NA, stage:2, alive, 930 days
14.7
DO50816
0 years, male, NA, stage:2, alive, 390 days
14.6
DO23511
0 years, female, NA, stage:3, dead, 180 days
14.6
DO23549
0 years, male, NA, stage:3, alive, 990 days
14.5
DO48732
0 years, male, NA, stage:3, alive, 630 days
14.5
DO23525
0 years, male, NA, stage:4, alive, 1050 days
14.5
DO50844
0 years, male, NA, stage:4, alive, 300 days
14.0
DO45299
0 years, female, NA, stage:1, alive, 1440 days
13.9
DO45301
0 years, male, NA, stage:2, dead, 1440 days
13.9
DO23539
0 years, male, NA, stage:1, alive, 1110 days
13.9
DO45259
0 years, male, NA, stage:3, alive, 330 days
13.9
DO50817
0 years, male, NA, stage:2, alive, 390 days
13.8
DO48701
0 years, male, NA, stage:2, alive, 780 days
13.8
DO45173
0 years, male, NA, stage:3, alive, 1170 days
13.7
DO45121
0 years, male, NA, stage:3, alive, 1530 days
13.6
DO45251
0 years, female, NA, stage:2, alive, 900 days
13.6
DO23552
0 years, female, NA, stage:1, alive, 810 days
13.6
DO45253
0 years, male, NA, stage:2, alive, 870 days
13.6
DO45107
0 years, female, NA, stage:2, alive, 1710 days
13.6
DO45163
0 years, male, NA, stage:2, alive, 960 days
13.6
DO50778
0 years, male, NA, stage:4, alive, 630 days
13.5
DO48751
0 years, male, NA, stage:2, dead, 480 days
13.5
DO45275
0 years, male, NA, stage:3, dead, 10 days
13.4
DO23513
0 years, male, NA, stage:3, alive, 1200 days
13.4
DO50859
0 years, male, NA, stage:2, alive, 180 days
13.3
DO45265
0 years, male, NA, stage:3, alive, 1020 days
13.3
DO48737
0 years, male, NA, stage:1, alive, 720 days
13.3
DO45095
0 years, male, NA, stage:2, alive, 1620 days
13.2
DO45141
0 years, male, NA, stage:2, alive, 1320 days
13.2
DO45281
0 years, male, NA, stage:4, alive, 750 days
13.1
DO45257
0 years, male, NA, stage:3, alive, 810 days
13.1
DO45277
0 years, male, NA, stage:3, alive, 600 days
13.1
DO45199
0 years, female, NA, stage:2, alive, 1350 days
13.0
DO45179
0 years, female, NA, stage:2, alive, 600 days
13.0
DO45229
0 years, male, NA, stage:1, alive, 990 days
13.0
DO45189
0 years, female, NA, stage:2, alive, 1200 days
12.8
DO45289
0 years, female, NA, stage:3, alive, 360 days
12.7
DO50809
0 years, male, NA, stage:3, dead, 720 days
12.7
DO48712
0 years, male, NA, stage:2, alive, 810 days
12.7
DO48741
0 years, male, NA, stage:3, alive, 240 days
12.6
DO23540
0 years, male, NA, stage:1, alive, 750 days
12.5
DO45211
0 years, male, NA, stage:3, alive, 240 days
12.5
DO45297
0 years, female, NA, stage:4, dead, 1260 days
12.5
DO23542
0 years, male, NA, stage:3, alive, 960 days
12.5
DO45255
0 years, male, NA, stage:3, alive, 720 days
12.3
DO227801
0 years, female, NA, stage:1, alive, 660 days
12.3
DO48695
0 years, male, NA, stage:2, alive, 720 days
12.3
DO45187
0 years, female, NA, stage:1, alive, 1260 days
12.3
DO50783
0 years, male, NA, stage:3, alive, 480 days
12.3
DO48706
0 years, male, NA, stage:2, alive, 870 days
12.3
DO50804
0 years, male, NA, stage:2, alive, 720 days
12.2
DO23510
0 years, female, NA, stage:2, alive, 870 days
12.2
DO23545
0 years, male, NA, stage:2, dead, 570 days
12.1
DO23514
0 years, male, NA, stage:2, alive, 1290 days
12.1
DO45283
0 years, male, NA, stage:3, alive, 510 days
12.1
DO23523
0 years, male, NA, stage:3, alive, 1080 days
12.0
DO48677
0 years, male, NA, stage:3, alive, 1140 days
11.9
DO50805
0 years, male, NA, stage:2, alive, 690 days
11.9
DO48700
0 years, female, NA, stage:2, alive, 810 days
11.9
DO48725
0 years, male, NA, stage:1, alive, 780 days
11.9
DO50776
0 years, male, NA, stage:1, alive, 690 days
11.8
DO45139
0 years, male, NA, stage:3, alive, 1320 days
11.8
DO45169
0 years, male, NA, stage:3, alive, 1350 days
11.7
DO23515
0 years, male, NA, stage:2, alive, 1230 days
11.7
DO23512
0 years, male, NA, stage:1, alive, 1260 days
11.7
DO45235
0 years, female, NA, stage:1, alive, 900 days
11.7
DO50822
0 years, male, NA, stage:2, alive, 510 days
11.6
DO45115
0 years, male, NA, stage:2, alive, 840 days
11.6
DO48679
0 years, male, NA, stage:2, alive, 1200 days
11.5
DO45183
0 years, female, NA, stage:2, dead, 570 days
11.4
DO45103
0 years, male, NA, stage:3, alive, 450 days
11.4
DO48720
0 years, female, NA, stage:2, alive, 570 days
11.4
DO48681
0 years, male, NA, stage:2, alive, 900 days
11.4
DO48746
0 years, male, NA, stage:3, alive, 570 days
11.3
DO48728
0 years, female, NA, stage:2, alive, 150 days
11.3
DO45267
0 years, male, NA, stage:3, dead, 570 days
11.3
DO48757
0 years, female, NA, stage:3, alive, 480 days
11.2
DO45279
0 years, male, NA, stage:3, alive, 1290 days
11.2
DO50850
0 years, male, NA, stage:3, alive, 720 days
11.2
DO45159
0 years, male, NA, stage:3, alive, 1470 days
11.2
DO48704
0 years, female, NA, stage:3, alive, 750 days
10.9
DO50814
0 years, male, NA, stage:3, alive, 420 days
10.9
DO45093
0 years, male, NA, stage:2, dead, 720 days
10.8
DO45261
0 years, male, NA, stage:3, alive, 990 days
10.8
DO50840
0 years, male, NA, stage:2, alive, 330 days
10.7
DO45157
0 years, male, NA, stage:2, alive, 1980 days
10.7
DO48721
0 years, female, NA, stage:1, alive, 900 days
10.6
DO45225
0 years, male, NA, stage:1, alive, 1050 days
10.6
DO45137
0 years, male, NA, stage:1, alive, 1320 days
10.6
DO45101
0 years, male, NA, stage:2, alive, 1680 days
10.5
DO48743
0 years, female, NA, stage:2, alive, 570 days
10.5
DO50819
0 years, female, NA, stage:2, alive, 510 days
10.5
DO23529
0 years, male, NA, stage:4, alive, 930 days
10.5
DO23543
0 years, male, NA, stage:2, alive, 1020 days
10.5
DO45155
0 years, male, NA, stage:2, alive, 2160 days
10.4
DO45231
0 years, male, NA, stage:2, alive, 930 days
10.4
DO45227
0 years, female, NA, stage:2, alive, 1020 days
10.4
DO45207
0 years, male, NA, stage:1, alive, 1050 days
10.4
DO50820
0 years, female, NA, stage:3, alive, 510 days
10.3
DO23536
0 years, male, NA, stage:2, alive, 930 days
10.2
DO45219
0 years, male, NA, stage:2, alive, 1080 days
10.2
DO45239
0 years, male, NA, stage:2, alive, 870 days
10.2
DO48716
0 years, male, NA, stage:2, alive, 720 days
10.1
DO23535
0 years, male, NA, stage:1, alive, 960 days
10.1
DO50789
0 years, female, NA, stage:2, alive, 570 days
10.1
DO45096
0 years, male, NA, stage:2, dead, 1290 days
10.1
DO45135
0 years, male, NA, stage:1, alive, 1410 days
10.0
DO48727
0 years, female, NA, stage:2, dead, 390 days
10.0
DO45165
0 years, male, NA, stage:2, alive, 690 days
10.0
DO45153
0 years, female, NA, stage:2, alive, 1380 days
9.9
DO45171
0 years, male, NA, stage:3, alive, 600 days
9.9
DO50857
0 years, male, NA, stage:2, alive, 210 days
9.9
DO45287
0 years, male, NA, stage:1, alive, 390 days
9.9
DO45191
0 years, female, NA, stage:2, alive, 1200 days
9.8
DO45109
0 years, male, NA, stage:2, alive, 1590 days
9.8
DO50787
0 years, male, NA, stage:3, alive, 480 days
9.8
DO23524
0 years, female, NA, stage:2, alive, 1050 days
9.7
DO45091
0 years, male, NA, stage:2, dead, 1320 days
9.7
DO23534
0 years, male, NA, stage:2, alive, 840 days
9.7
DO45243
0 years, female, NA, stage:3, alive, 930 days
9.6
DO45215
0 years, male, NA, stage:2, alive, 1170 days
9.6
DO45131
0 years, male, NA, stage:4, dead, 360 days
9.6
DO50818
0 years, male, NA, stage:2, alive, 510 days
9.5
DO48672
0 years, male, NA, stage:2, alive, 450 days
9.5
DO45197
0 years, male, NA, stage:2, alive, 1170 days
9.5
DO45113
0 years, male, NA, stage:3, alive, 1560 days
9.4
DO50832
0 years, male, NA, stage:3, alive, 90 days
9.4
DO48693
0 years, male, NA, stage:2, alive, 900 days
9.4
DO45143
0 years, male, NA, stage:3, alive, 1290 days
9.3
DO45249
0 years, male, NA, stage:1, alive, 630 days
9.3
DO45213
0 years, male, NA, stage:1, alive, 1200 days
9.2
DO23530
0 years, male, NA, stage:4, dead, 180 days
9.2
DO23541
0 years, male, NA, stage:2, alive, 930 days
9.2
DO45177
0 years, female, NA, stage:3, alive, 1260 days
9.1
DO45099
0 years, male, NA, stage:3, alive, 1590 days
9.1
DO45237
0 years, male, NA, stage:2, alive, 900 days
9.0
DO23509
0 years, male, NA, stage:3, dead, 780 days
9.0
DO50825
0 years, male, NA, stage:2, alive, 390 days
8.9
DO45117
0 years, female, NA, stage:2, dead, 1110 days
8.9
DO50800
0 years, male, NA, stage:2, alive, 510 days
8.8
DO23544
0 years, male, NA, stage:2, alive, 960 days
8.7
DO45094
0 years, male, NA, stage:3, alive, 1650 days
8.7
DO45123
0 years, female, NA, stage:2, dead, 570 days
8.6
DO50798
0 years, male, NA, stage:3, dead, 30 days
8.5
DO48719
0 years, male, NA, stage:2, alive, 690 days
8.5
DO45195
0 years, male, NA, stage:1, alive, 390 days
8.4
DO48761
0 years, male, NA, stage:2, alive, 870 days
8.4
DO50803
0 years, female, NA, stage:1, alive, 540 days
8.4
DO23550
0 years, male, NA, stage:1, alive, 990 days
8.3
DO227643
0 years, male, NA, stage:2, alive, 1260 days
8.3
DO45221
0 years, female, NA, stage:4, dead, 390 days
8.3
DO45247
0 years, female, NA, stage:2, alive, 210 days
8.3
DO45129
0 years, male, NA, stage:3, alive, 1470 days
8.2
DO45127
0 years, male, NA, stage:3, dead, 420 days
8.2
DO48733
0 years, male, NA, stage:2, alive, 600 days
8.2
DO45133
0 years, male, NA, stage:3, dead, 660 days
7.8
DO48674
0 years, male, NA, stage:2, alive, 1260 days
7.7
DO45223
0 years, male, NA, stage:4, alive, 1020 days
7.7
DO48760
0 years, female, NA, stage:2, alive, 690 days
7.5
DO23518
0 years, male, NA, stage:2, alive, 1320 days
7.3
DO45181
0 years, female, NA, stage:2, alive, 1200 days
7.3
DO23527
0 years, male, NA, stage:1, alive, 1050 days
7.2
DO23551
0 years, male, NA, stage:3, dead, 150 days
7.2
DO50793
0 years, male, NA, stage:4, alive, 540 days
7.2
DO50808
0 years, male, NA, stage:2, alive, 570 days
7.1
DO45201
0 years, male, NA, stage:1, alive, 900 days
7.1
DO45167
0 years, male, NA, stage:2, dead, 1440 days
7.0
DO48742
0 years, male, NA, stage:2, alive, 600 days
6.9
DO45303
0 years, female, NA, stage:3, alive, 990 days
6.9
DO45233
0 years, male, NA, stage:3, alive, 900 days
6.9
DO45175
0 years, male, NA, stage:2, alive, 1140 days
6.8
DO50807
0 years, male, NA, stage:1, alive, 540 days
6.8
DO23531
0 years, female, NA, stage:3, alive, 900 days
6.6
DO23517
0 years, male, NA, stage:2, alive, 1200 days
6.4
DO45263
0 years, male, NA, stage:3, dead, 270 days
6.4
DO23538
0 years, male, NA, stage:2, alive, 450 days
6.3
DO45305
0 years, male, NA, stage:4, alive, 300 days
6.2
DO45203
0 years, female, NA, stage:2, alive, 1170 days
6.0
DO50774
0 years, female, NA, stage:2, alive, 720 days
5.9
DO45111
0 years, male, NA, stage:2, alive, 1590 days
5.3
DO45245
0 years, female, NA, stage:2, dead, 240 days
2.4
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
393
Tumor
2.0
385
Tumor
1.5
387
Tumor
1.4
395
Tumor
1.4
391
Tumor
1.3
388
Normal
0.9
386
Normal
0.8
627
Tumor
0.8
451
Tumor
0.8
124
Normal
0.7
112
Tumor
0.7
114
Normal
0.7
554
Normal
0.7
911
Tumor
0.6
913
Tumor
0.6
113
Tumor
0.6
698
Normal
0.6
863
Tumor
0.6
618
Normal
0.5
185
Tumor
0.5
357
Tumor
0.5
862
Normal
0.5
635
Tumor
0.5
123
Tumor
0.5
111
Normal
0.5
642
Normal
0.5
487
Tumor
0.5
615
Tumor
0.4
171
Tumor
0.4
126
Normal
0.4
416
Normal
0.4
392
Normal
0.4
277
Tumor
0.4
384
Normal
0.4
465
Tumor
0.4
1045
Tumor
0.4
723
Tumor
0.4
517
Tumor
0.4
1022
Normal
0.4
868
Normal
0.4
488
Normal
0.4
514
Normal
0.4
883
Tumor
0.3
312
Normal
0.3
222
Normal
0.3
484
Normal
0.3
513
Tumor
0.3
298
Normal
0.3
128
Normal
0.3
526
Normal
0.3
695
Tumor
0.3
314
Normal
0.3
332
Normal
0.3
452
Normal
0.3
1041
Tumor
0.3
464
Normal
0.3
636
Normal
0.3
744
Normal
0.3
343
Tumor
0.3
356
Normal
0.3
125
Tumor
0.3
524
Normal
0.3
327
Tumor
0.3
342
Normal
0.3
278
Normal
0.3
376
Normal
0.3
477
Tumor
0.3
867
Tumor
0.2
925
Tumor
0.2
463
Tumor
0.2
436
Normal
0.2
823
Tumor
0.2
494
Normal
0.2
462
Normal
0.2
186
Normal
0.2
414
Normal
0.2
466
Normal
0.2
426
Normal
0.2
516
Normal
0.2
924
Normal
0.2
1046
Normal
0.2
313
Tumor
0.2
214
Normal
0.2
162
Normal
0.2
396
Normal
0.2
456
Normal
0.2
192
Normal
0.2
341
Tumor
0.2
1021
Tumor
0.2
616
Normal
0.2
964
Normal
0.2
172
Normal
0.2
912
Normal
0.2
344
Normal
0.2
1042
Normal
0.2
672
Normal
0.2
742
Normal
0.2
1026
Normal
0.2
366
Normal
0.2
1014
Normal
0.2
628
Normal
0.2
741
Tumor
0.2
427
Tumor
0.2
424
Normal
0.1
423
Tumor
0.1
518
Normal
0.1
498
Normal
0.1
722
Normal
0.1
714
Normal
0.1
472
Normal
0.1
696
Normal
0.1
331
Tumor
0.1
425
Tumor
0.1
218
Normal
0.1
728
Normal
0.1
362
Normal
0.1
1028
Normal
0.1
421
Tumor
0.1
816
Normal
0.1
981
Tumor
0.1
926
Normal
0.1
1032
Normal
0.1
878
Normal
0.1
482
Normal
0.1
161
Tumor
0.1
142
Normal
0.1
127
Tumor
0.1
443
Tumor
0.1
328
Normal
0.1
864
Normal
0.1
957
Tumor
0.1
716
Normal
0.1
146
Normal
0.1
455
Tumor
0.1
818
Normal
0.1
617
Tumor
0.1
641
Tumor
0.1
433
Tumor
0.1
446
Normal
0.1
412
Normal
0.1
361
Tumor
0.1
286
Normal
0.0
132
Normal
0.0
428
Normal
0.0
874
Normal
0.0
191
Tumor
0.0
483
Tumor
0.0
882
Normal
0.0
411
Tumor
0.0
1044
Normal
0.0
738
Normal
0.0
915
Tumor
0.0
536
Normal
0.0
422
Normal
0.0
982
Normal
0.0
918
Normal
0.0
365
Tumor
0.0
448
Normal
0.0
968
Normal
0.0
196
Normal
0.0
364
Normal
0.0
148
Normal
0.0
434
Normal
0.0
922
Normal
0.0
978
Normal
0.0
368
Normal
0.0
474
Normal
0.0
884
Normal
0.0
938
Normal
0.0
858
Normal
0.0
383
Tumor
0.0
523
Tumor
0.0
515
Tumor
0.0
187
Tumor
0.0
1016
Normal
0.0
188
Normal
0.0
944
Normal
0.0
478
Normal
0.0
965
Tumor
0.0
966
Normal
0.0
954
Normal
0.0
715
Tumor
0.0
525
Tumor
0.0
367
Tumor
0.0
147
Tumor
0.0
1031
Tumor
-0.1
984
Normal
-0.1
914
Normal
-0.1
956
Normal
-0.1
713
Tumor
-0.1
686
Normal
-0.1
432
Normal
-0.1
471
Tumor
-0.1
413
Tumor
-0.1
861
Tumor
-0.1
355
Tumor
-0.1
481
Tumor
-0.1
921
Tumor
-0.1
415
Tumor
-0.1
866
Normal
-0.1
473
Tumor
-0.1
217
Tumor
-0.1
857
Tumor
-0.1
461
Tumor
-0.1
447
Tumor
-0.1
814
Normal
-0.1
311
Tumor
-0.1
648
Normal
-0.1
852
Normal
-0.1
435
Tumor
-0.1
917
Tumor
-0.1
224
Normal
-0.1
958
Normal
-0.1
1043
Tumor
-0.1
664
Normal
-0.2
221
Tumor
-0.2
352
Normal
-0.2
363
Tumor
-0.2
817
Tumor
-0.2
662
Normal
-0.2
138
Normal
-0.2
145
Tumor
-0.2
445
Tumor
-0.2
951
Tumor
-0.2
976
Normal
-0.2
394
Normal
-0.2
685
Tumor
-0.2
284
Normal
-0.2
354
Normal
-0.2
467
Tumor
-0.2
743
Tumor
-0.2
786
Normal
-0.2
492
Normal
-0.2
916
Normal
-0.2
952
Normal
-0.2
824
Normal
-0.2
136
Normal
-0.2
353
Tumor
-0.2
297
Tumor
-0.2
881
Tumor
-0.2
756
Normal
-0.2
666
Normal
-0.2
213
Tumor
-0.2
953
Tumor
-0.2
745
Tumor
-0.2
534
Normal
-0.3
975
Tumor
-0.3
468
Normal
-0.3
358
Normal
-0.3
977
Tumor
-0.3
721
Tumor
-0.3
351
Tumor
-0.3
746
Normal
-0.3
1025
Tumor
-0.3
228
Normal
-0.3
131
Tumor
-0.3
778
Normal
-0.3
865
Tumor
-0.3
195
Tumor
-0.3
697
Tumor
-0.3
967
Tumor
-0.3
1015
Tumor
-0.3
943
Tumor
-0.3
491
Tumor
-0.3
955
Tumor
-0.3
493
Tumor
-0.4
923
Tumor
-0.4
141
Tumor
-0.4
546
Normal
-0.4
937
Tumor
-0.4
227
Tumor
-0.4
851
Tumor
-0.4
431
Tumor
-0.4
212
Normal
-0.4
815
Tumor
-0.4
777
Tumor
-0.4
647
Tumor
-0.4
444
Normal
-0.4
223
Tumor
-0.4
375
Tumor
-0.5
873
Tumor
-0.5
737
Tumor
-0.5
724
Normal
-0.5
755
Tumor
-0.5
1027
Tumor
-0.5
727
Tumor
-0.5
497
Tumor
-0.5
661
Tumor
-0.5
665
Tumor
-0.5
813
Tumor
-0.6
671
Tumor
-0.6
535
Tumor
-0.6
285
Tumor
-0.6
963
Tumor
-0.6
211
Tumor
-0.7
538
Normal
-0.7
877
Tumor
-0.7
528
Normal
-0.7
283
Tumor
-0.7
663
Tumor
-0.8
983
Tumor
-0.8
527
Tumor
-0.9
135
Tumor
-0.9
785
Tumor
-1.0
533
Tumor
-1.0
137
Tumor
-1.0
553
Tumor
-1.3
1013
Tumor
-1.3
545
Tumor
-1.3
537
Tumor
-1.4
231
Tumor
N/A
232
Normal
N/A
257
Tumor
N/A
258
Normal
N/A
261
Tumor
N/A
262
Normal
N/A
267
Tumor
N/A
268
Normal
N/A
271
Tumor
N/A
272
Normal
N/A
557
Tumor
N/A
558
Normal
N/A
563
Tumor
N/A
564
Normal
N/A
567
Tumor
N/A
568
Normal
N/A
571
Tumor
N/A
572
Normal
N/A
573
Tumor
N/A
574
Normal
N/A
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
