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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
h
m
l
n
Glial cells:
Not detected
Neuronal cells:
Medium
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
22.6
nTPM
HPA Brain:
44.5
nTPM
GTEx:
22.6
nTPM
FANTOM5:
47.4
Scaled Tags Per Million
Pig:
23.2
nTPM
Mouse:
20.4
nTPM
Allen mouse:
3.8
Expression energy
HIPPOCAMPUS - Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
Antibody HPA069116
Antibody CAB005429
Antibody CAB039240
Antibody CAB069907
Glial cells
Medium
Medium
Not detected
Low
Neuronal cells
Medium
High
Medium
Medium
HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
44.5
Sample id
Sample description
nTPM
Hippocampus nTPM: 35.3
2529
Female, age 94, left hemisphere
39.6
1911
Female, age 85, right hemisphere
39.3
2621
Female, age 67, right hemisphere
37.5
1855
Male, age 76, left hemisphere
37.0
1898
Male, age 80, left hemisphere
30.5
2148
Female, age 91, left hemisphere
27.7
Dentate gyrus nTPM: 36.7
2010
Male, age 76, both hemispheres
74.9
2528
Male, age 74, both hemispheres
36.6
2246
Female, age 85, both hemispheres
31.9
2531
Female, age 67, both hemispheres
29.2
2530
Female, age 94, left hemisphere
24.8
1927
Female, age 91, both hemispheres
23.0
Entorhinal gyrus nTPM: 22.7
2686
Male, age 75, right hemisphere
32.5
1787
Male, age 76, left hemisphere
25.9
2613
Female, age 94, left hemisphere
20.3
1938
Female, age 85, left hemisphere
19.5
2764
Male, age 80, right hemisphere
19.5
2117
Female, age 91, right hemisphere
18.6
Hippocampus, CA1 nTPM: 44.5
2527
Male, age 74, both hemispheres
63.2
2045
Male, age 76, both hemispheres
59.7
2082
Female, age 91, right hemisphere
38.2
2749
Male, age 80, left hemisphere
33.0
1873
Female, age 85, both hemispheres
28.3
Hippocampus, CA2 nTPM: 36.3
2249
Male, age 74, both hemispheres
61.6
1963
Male, age 80, left hemisphere
33.5
2437
Female, age 94, left hemisphere
33.1
2113
Female, age 91, right hemisphere
33.0
1940
Female, age 85, left hemisphere
28.8
1892
Male, age 76, both hemispheres
27.9
Hippocampus, CA3 nTPM: 38.7
2436
Male, age 74, both hemispheres
70.7
1867
Male, age 76, both hemispheres
40.0
2137
Male, age 80, left hemisphere
36.5
2861
Female, age 67, both hemispheres
33.8
1891
Female, age 85, both hemispheres
30.8
2620
Female, age 94, left hemisphere
20.6
Parahippocampal cortex nTPM: 31.6
2018
Male, age 76, both hemispheres
65.3
2692
Male, age 74, both hemispheres
41.5
2250
Female, age 67, right hemisphere
38.5
2622
Female, age 67, right hemisphere
32.3
2532
Female, age 72, left hemisphere
27.4
1933
Female, age 85, both hemispheres
25.4
2245
Female, age 91, both hemispheres
24.0
2693
Female, age 94, both hemispheres
21.4
1990
Female, age 91, right hemisphere
21.0
1850
Male, age 80, both hemispheres
19.0
Perirhinal gyrus nTPM: 19.5
1841
Female, age 85, right hemisphere
23.5
2521
Female, age 94, right hemisphere
22.4
1847
Female, age 91, left hemisphere
20.5
2848
Male, age 76, right hemisphere
15.9
1794
Male, age 80, right hemisphere
15.5
Subiculum nTPM: 33.1
2042
Male, age 76, both hemispheres
44.2
2619
Male, age 74, both hemispheres
43.9
2438
Female, age 94, left hemisphere
31.8
1901
Male, age 80, both hemispheres
31.3
1977
Female, age 85, both hemispheres
26.8
2729
Female, age 91, right hemisphere
20.9
HIPPOCAMPAL FORMATION - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
22.6
GTEx sample id
Sample description
nTPM
Brain - Hippocampus Average nTPM: 22.6
Samples: 197
Max nTPM: 114.0
Min nTPM: 3.1
Std nTPM: 17.9
Median nTPM: 16.6
GTEX-1GZHY-0011-R1a-SM-CE6RR
50-59 years, female
114.0
GTEX-17EVQ-0011-R1a-SM-7189S
70-79 years, male
96.1
GTEX-13SLW-0011-R1a-SM-5S2W7
70-79 years, male
87.8
GTEX-1EH9U-0011-R1b-SM-CJI2B
60-69 years, male
85.5
GTEX-13RTL-0011-R1a-SM-5PNZ8
40-49 years, male
83.6
GTEX-11ONC-0011-R1a-SM-57WD4
60-69 years, male
80.5
GTEX-WWYW-0011-R1A-SM-3TW8G
50-59 years, female
72.1
GTEX-13OW5-0011-R1b-SM-5L3GE
60-69 years, male
71.9
GTEX-17F97-0011-R1b-SM-7IGM9
50-59 years, male
63.8
GTEX-X4EP-0011-R1A-SM-3P624
60-69 years, female
55.3
GTEX-1IKK5-0011-R1b-SM-CE6SQ
60-69 years, male
52.2
GTEX-1A3MX-0011-R1b-SM-7P8PH
60-69 years, male
52.0
GTEX-13NYS-0011-R1b-SM-5MR55
60-69 years, male
49.9
GTEX-17HG3-0011-R1a-SM-7LG6H
30-39 years, female
49.7
GTEX-16GPK-0011-R1b-SM-7EWDH
60-69 years, male
49.6
GTEX-13OVJ-0011-R1b-SM-5L3I6
50-59 years, female
47.2
GTEX-1GN1U-0011-R1a-SM-CJI25
50-59 years, female
47.2
GTEX-1A32A-0011-R1a-SM-7P8SQ
50-59 years, female
45.8
GTEX-11TUW-0011-R1a-SM-DO92S
60-69 years, male
45.4
GTEX-13JUV-0011-R1a-SM-5LZY4
40-49 years, female
42.4
GTEX-1LG7Y-0011-R1a-SM-EYYWV
50-59 years, male
42.4
GTEX-1212Z-0011-R1b-SM-5BC72
60-69 years, male
42.2
GTEX-1J8Q2-0011-R1a-SM-D4P2D
60-69 years, male
42.0
GTEX-13JVG-0011-R1a-SM-5KM32
60-69 years, male
41.0
GTEX-16XZZ-0011-R1a-SM-7LTAH
60-69 years, male
40.2
GTEX-1HGF4-0011-R1a-SM-CJI3S
60-69 years, male
40.0
GTEX-11GS4-0011-R1a-SM-DO129
60-69 years, male
39.3
GTEX-1CAV2-0011-R1a-SM-ARZML
40-49 years, female
38.4
GTEX-17JCI-0011-R1b-SM-718A3
60-69 years, female
37.9
GTEX-T5JC-0011-R1A-SM-32PM6
20-29 years, male
37.0
GTEX-11WQC-0011-R1b-SM-DO932
60-69 years, male
36.7
GTEX-WHSE-0011-R1A-SM-3P5ZK
20-29 years, male
36.6
GTEX-14PJO-0011-R1b-SM-6AJAK
60-69 years, male
36.5
GTEX-P44H-0011-R1A-SM-3NM8J
40-49 years, male
36.0
GTEX-1GMR8-0011-R1b-SM-CJI2O
50-59 years, female
35.6
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y
40-49 years, male
34.9
GTEX-1GTWX-0011-R1a-SM-CE6RL
60-69 years, male
34.7
GTEX-1I1GQ-0011-R1a-SM-CY8GG
50-59 years, male
34.0
GTEX-12WSD-0011-R1b-SM-5LZVY
60-69 years, female
33.9
GTEX-13QIC-0011-R1a-SM-5O9CJ
60-69 years, female
33.7
GTEX-11GSO-0011-R1b-SM-57WD3
60-69 years, male
31.9
GTEX-ZUA1-0011-R1a-SM-4YCE2
40-49 years, male
30.5
GTEX-15DCD-0011-R1b-SM-6LPIJ
70-79 years, female
30.4
GTEX-11GSP-0011-R1a-SM-9QEJ3
60-69 years, female
30.4
GTEX-1B996-0011-R1b-SM-7P8PO
60-69 years, male
29.4
GTEX-131YS-0011-R1a-SM-5DUXC
60-69 years, female
28.7
GTEX-1I1GS-0011-R1a-SM-CJI43
60-69 years, male
28.5
GTEX-1IDJH-0011-R1b-SM-ARU6U
70-79 years, male
28.1
GTEX-1C64N-0011-R1b-SM-7P8Q7
50-59 years, male
28.0
GTEX-1H3VE-0011-R1a-SM-A9G1K
40-49 years, male
27.2
GTEX-13FTY-0011-R1a-SM-5LZXE
40-49 years, female
26.3
GTEX-1J1OQ-0011-R1a-SM-A9G1Z
40-49 years, female
26.1
GTEX-1A8G6-0011-R1a-SM-7P8PC
60-69 years, male
25.9
GTEX-13N1W-0011-R1b-SM-5MR4T
70-79 years, male
25.7
GTEX-1H4P4-0011-R1b-SM-CL54V
50-59 years, male
25.5
GTEX-11ZTS-0011-R1a-SM-5BC71
60-69 years, female
24.6
GTEX-17MF6-0011-R1a-SM-72D6O
40-49 years, male
24.4
GTEX-1H1DG-0011-R1b-SM-CKZP1
70-79 years, male
24.4
GTEX-1E1VI-0011-R1a-SM-ARZMM
50-59 years, male
24.2
GTEX-1GF9V-0011-R1a-SM-CKZNQ
60-69 years, male
24.1
GTEX-ZVZQ-0011-R1a-SM-57WBU
60-69 years, female
23.8
GTEX-13QJC-0011-R1b-SM-5S2UU
60-69 years, female
23.1
GTEX-1F6I4-0011-R1a-SM-9OSWU
60-69 years, male
22.8
GTEX-13PDP-0011-R1a-SM-5PNX5
60-69 years, male
22.5
GTEX-145LS-0011-R1b-SM-5PNUP
60-69 years, female
22.3
GTEX-YFC4-0011-R1a-SM-4V6EH
40-49 years, female
22.0
GTEX-1GN73-0011-R1a-SM-CKZNT
60-69 years, male
22.0
GTEX-P44G-0011-R1A-SM-2I3FE
30-39 years, male
21.7
GTEX-139TT-0011-R1a-SM-5LZVD
60-69 years, male
21.6
GTEX-1HBPI-0011-R1b-SM-A9SKF
50-59 years, male
21.6
GTEX-1I1GV-0011-R1a-SM-CL559
60-69 years, male
21.3
GTEX-1H1CY-0011-R1a-SM-CKZOZ
60-69 years, female
21.2
GTEX-WVLH-0011-R1A-SM-4MVOK
50-59 years, male
21.1
GTEX-1HSKV-0011-R1b-SM-CMKH7
60-69 years, male
21.0
GTEX-X4XX-0011-R1B-SM-3P622
60-69 years, male
20.9
GTEX-NPJ8-0011-R1a-SM-33HCB
40-49 years, male
20.8
GTEX-OHPN-0011-R1A-SM-2I5GB
60-69 years, female
20.8
GTEX-1EMGI-0011-R1b-SM-9OSWZ
60-69 years, male
20.7
GTEX-1LB8K-0011-R1b-SM-EZ6MV
50-59 years, male
20.4
GTEX-145LU-0011-R1a-SM-5Q5CE
50-59 years, male
20.2
GTEX-QDT8-0011-R1A-SM-32PKS
30-39 years, female
20.0
GTEX-1C6VR-0011-R1a-SM-7MXUE
60-69 years, male
20.0
GTEX-131XH-0011-R1a-SM-5DUWA
50-59 years, male
19.9
GTEX-11UD1-0011-R1b-SM-5BC7D
40-49 years, female
19.7
GTEX-Q2AG-0011-R1A-SM-2HMJI
40-49 years, female
19.4
GTEX-12WSM-0011-R1a-SM-5LZW6
60-69 years, male
19.3
GTEX-13FHP-0011-R1b-SM-5K7XL
50-59 years, male
19.0
GTEX-12WSH-0011-R1a-SM-5GU5V
50-59 years, male
18.9
GTEX-13NZ8-0011-R1b-SM-5KM3V
60-69 years, female
18.7
GTEX-16Z82-0011-R1b-SM-7EPHZ
60-69 years, male
18.7
GTEX-14PJM-0011-R1a-SM-CNPO3
50-59 years, female
17.8
GTEX-1B933-0011-R1b-SM-9QEGW
50-59 years, female
17.8
GTEX-18A6Q-0011-R1b-SM-731DI
60-69 years, male
17.5
GTEX-16YQH-0011-R1a-SM-7LT8R
30-39 years, male
17.0
GTEX-145MH-0011-R1b-SM-5PNWY
50-59 years, male
16.9
GTEX-1C6VQ-0011-R1a-SM-7P8Q2
50-59 years, male
16.9
GTEX-PVOW-0011-R1A-SM-32PL6
40-49 years, male
16.8
GTEX-1F48J-0011-R1a-SM-9QEIC
50-59 years, female
16.8
GTEX-1CB4J-0011-R1a-SM-9WG64
60-69 years, male
16.6
GTEX-17HHY-0011-R1a-SM-7189V
50-59 years, male
16.4
GTEX-13S7M-0011-R1b-SM-5PNZE
60-69 years, female
16.1
GTEX-1CB4G-0011-R1b-SM-9QEHT
60-69 years, male
16.1
GTEX-14ASI-0011-R1b-SM-5S2TY
60-69 years, male
16.0
GTEX-ZDXO-0011-R1a-SM-4WKF4
60-69 years, male
15.9
GTEX-11DXW-0011-R1a-SM-DNZZD
40-49 years, male
15.8
GTEX-1BAJH-0011-R1a-SM-7P8SV
70-79 years, male
15.8
GTEX-13NZA-0011-R1b-SM-5LUAF
60-69 years, male
15.4
GTEX-WZTO-0011-R1B-SM-3NMAR
40-49 years, male
15.3
GTEX-1F75A-0011-R1b-SM-CE6RA
50-59 years, male
15.3
GTEX-1I1HK-0011-R1b-SM-CM2T7
60-69 years, male
15.2
GTEX-1F75W-0011-R1a-SM-ARU81
60-69 years, male
15.0
GTEX-13O3Q-0011-R1b-SM-5KM3L
50-59 years, male
14.9
GTEX-1ICLZ-0011-R1b-SM-A9SM3
60-69 years, male
14.9
GTEX-1E2YA-0011-R1b-SM-CJI29
50-59 years, male
14.8
GTEX-TSE9-0011-R1A-SM-3DB7E
60-69 years, female
14.7
GTEX-1HSMO-0011-R1a-SM-CM2SV
60-69 years, male
14.7
GTEX-14E7W-0011-R1b-SM-5YYAT
70-79 years, male
14.6
GTEX-13FHO-0011-R1b-SM-5KLZG
60-69 years, male
14.5
GTEX-13112-0011-R1b-SM-5HL7K
50-59 years, male
14.4
GTEX-1IY9M-0011-R1a-SM-EXURZ
60-69 years, male
14.4
GTEX-14C5O-0011-R1b-SM-6AJBW
60-69 years, male
14.3
GTEX-1EKGG-0011-R1b-SM-9QEI1
60-69 years, male
14.3
GTEX-13OW7-0011-R1b-SM-5L3HF
50-59 years, male
14.2
GTEX-13X6I-0011-R1b-SM-5PNZC
60-69 years, male
14.2
GTEX-13OW6-0011-R1a-SM-5L3HQ
50-59 years, male
14.0
GTEX-1F6IF-0011-R1b-SM-9WG78
60-69 years, male
13.9
GTEX-15UF6-0011-R1a-SM-9QEGH
70-79 years, female
13.7
GTEX-R55E-0011-R1A-SM-2TC6N
20-29 years, male
13.3
GTEX-14E6D-0011-R1b-SM-5YYAW
50-59 years, male
13.1
GTEX-S7SE-0011-R1A-SM-2XCDE
50-59 years, male
13.1
GTEX-X585-0011-R1B-SM-46MVE
50-59 years, male
13.1
GTEX-1B8SF-0011-R1b-SM-7P8Q8
60-69 years, male
13.1
GTEX-1313W-0011-R1b-SM-5EQ4A
50-59 years, female
12.6
GTEX-14PN4-0011-R1b-SM-69LP8
50-59 years, male
12.6
GTEX-ZE7O-0011-R1a-SM-57WDM
50-59 years, female
12.6
GTEX-1GF9W-0011-R1a-SM-9QEIQ
60-69 years, male
12.6
GTEX-RNOR-0011-R1A-SM-CNNP5
50-59 years, female
12.6
GTEX-14ABY-0011-R1a-SM-6EU2W
50-59 years, male
12.4
GTEX-13N2G-0011-R1b-SM-5MR3G
60-69 years, male
12.3
GTEX-13OW8-0011-R1a-SM-5L3HI
60-69 years, male
12.3
GTEX-YJ89-0011-R1a-SM-4RGLS
60-69 years, male
12.2
GTEX-Y8DK-0011-R1A-SM-4RGLO
60-69 years, male
12.1
GTEX-13CF2-0011-R1a-SM-5LZY1
60-69 years, male
12.0
GTEX-1399T-0011-R1b-SM-5DUWN
60-69 years, male
11.8
GTEX-14PQA-0011-R1b-SM-6EU1G
50-59 years, female
11.7
GTEX-11ZVC-0011-R1b-SM-5BC6M
50-59 years, female
11.6
GTEX-1HT8W-0011-R1b-SM-CJI3V
30-39 years, male
11.6
GTEX-14LLW-0011-R1a-SM-5ZZVD
70-79 years, female
11.5
GTEX-11EI6-0011-R1a-SM-DO93L
60-69 years, male
11.4
GTEX-13RTJ-0011-R1a-SM-5O9D9
60-69 years, male
11.3
GTEX-13FLW-0011-R1b-SM-5LZX2
50-59 years, male
11.2
GTEX-13O3O-0011-R1b-SM-5KM2K
60-69 years, female
11.2
GTEX-13NYB-0011-R1b-SM-5KM4F
40-49 years, male
11.0
GTEX-139T8-0011-R1a-SM-5HL75
60-69 years, male
10.9
GTEX-13G51-0011-R1a-SM-5LZYR
60-69 years, male
10.7
GTEX-1B8L1-0011-R1a-SM-7P8SS
60-69 years, male
10.7
GTEX-1H23P-0011-R1a-SM-ACKVC
60-69 years, male
10.6
GTEX-1IOXB-0011-R1a-SM-D4P27
50-59 years, male
10.6
GTEX-13FXS-0011-R1a-SM-5K7U6
50-59 years, male
10.4
GTEX-15ER7-0011-R1b-SM-7KUE1
20-29 years, female
10.1
GTEX-1H1ZS-0011-R1b-SM-A9G1E
70-79 years, male
10.0
GTEX-13OVL-0011-R1a-SM-5L3H5
50-59 years, male
9.8
GTEX-144GO-0011-R1a-SM-5PNWO
60-69 years, male
9.7
GTEX-N7MT-0011-R1a-SM-CNPO1
60-69 years, female
9.7
GTEX-12WSE-0011-R1b-SM-5GU4V
20-29 years, male
9.6
GTEX-15CHQ-0011-R1a-SM-COH27
60-69 years, male
9.4
GTEX-1EWIQ-0011-R1a-SM-9OSX7
70-79 years, female
9.3
GTEX-QMR6-0011-R1A-SM-32PKW
50-59 years, male
9.1
GTEX-16NPV-0011-R1b-SM-7MGVZ
50-59 years, female
9.1
GTEX-132Q8-0011-R1a-SM-5EGLK
60-69 years, male
9.0
GTEX-1GN2E-0011-R1b-SM-CE6RJ
60-69 years, male
8.9
GTEX-144GL-0011-R1a-SM-5PNZ5
50-59 years, male
8.7
GTEX-14LZ3-0011-R1a-SM-69LP5
60-69 years, female
8.6
GTEX-14JIY-0011-R1a-SM-68713
60-69 years, male
8.4
GTEX-N7MS-0011-R1a-SM-2HMJG
60-69 years, male
8.1
GTEX-17EVP-0011-R1a-SM-7DHLA
40-49 years, male
8.0
GTEX-ZF28-0011-R1a-SM-4WWD1
60-69 years, male
7.7
GTEX-1AX9I-0011-R1b-SM-7RHG2
60-69 years, male
7.5
GTEX-17HII-0011-R1b-SM-7MGVW
50-59 years, male
7.4
GTEX-1EX96-0011-R1a-SM-CE6R5
50-59 years, male
7.4
GTEX-XMD1-0011-R1A-SM-4AT4C
60-69 years, male
7.3
GTEX-NL3H-0011-R1a-SM-48TDJ
60-69 years, male
7.2
GTEX-UTHO-0011-R1A-SM-3GIJO
60-69 years, male
7.0
GTEX-1HR98-0011-R1a-SM-ARZLQ
60-69 years, male
6.5
GTEX-QVUS-0011-R1A-SM-3GAD2
60-69 years, female
6.4
GTEX-1H3O1-0011-R1b-SM-CL554
60-69 years, male
5.9
GTEX-ZAB4-0011-R1a-SM-4RGNO
40-49 years, male
5.6
GTEX-PWO3-0011-R1A-SM-2I5EW
60-69 years, female
5.5
GTEX-T6MN-0011-R1A-SM-32QOY
50-59 years, male
5.2
GTEX-12ZZX-0011-R1a-SM-5EQ6B
40-49 years, female
5.0
GTEX-QVJO-0011-R1A-SM-2S1QI
60-69 years, female
4.9
GTEX-12WSF-0011-R1a-SM-5DUVI
70-79 years, male
4.8
GTEX-WL46-0011-R1A-SM-3LK6M
50-59 years, male
4.8
GTEX-14BIM-0011-R1a-SM-69LQI
60-69 years, female
4.5
GTEX-NPJ7-0011-R1a-SM-3GACT
60-69 years, female
4.2
GTEX-183WM-0011-R1a-SM-718A8
70-79 years, female
3.4
GTEX-1H3NZ-0011-R1a-SM-CKZP5
60-69 years, male
3.1
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
20.4
Mouse sample
Sample description
nTPM
Entorhinal cortex nTPM: 20.4
Samples: 4
Max nTPM: 23.5
Min nTPM: 16.9
Sample A
Male
23.5
Sample B
Male
23.2
Sample C
Female
17.9
Sample D
Female
16.9
Hippocampal formation nTPM: 16.0
Samples: 4
Max nTPM: 20.0
Min nTPM: 10.5
Sample A
Male
17.4
Sample B
Male
20.0
Sample C
Female
10.5
Sample D
Female
16.0
HIPPOCAMPAL FORMATION - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.