We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
155.2
nTPM
HPA Brain:
652.4
nTPM
GTEx:
155.2
nTPM
FANTOM5:
651.8
Scaled Tags Per Million
Pig:
396.5
nTPM
Mouse:
111.3
nTPM
Allen mouse:
10.0
Expression energy
HIPPOCAMPUS - Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
652.4
Sample id
Sample description
nTPM
Hippocampus nTPM: 552.8
2529
Female, age 94, left hemisphere
641.0
1911
Female, age 85, right hemisphere
624.2
1855
Male, age 76, left hemisphere
561.1
2621
Female, age 67, right hemisphere
511.2
1898
Male, age 80, left hemisphere
503.0
2148
Female, age 91, left hemisphere
476.3
Dentate gyrus nTPM: 472.7
2530
Female, age 94, left hemisphere
601.5
2010
Male, age 76, both hemispheres
553.3
2246
Female, age 85, both hemispheres
497.4
2528
Male, age 74, both hemispheres
471.1
2531
Female, age 67, both hemispheres
363.0
1927
Female, age 91, both hemispheres
350.2
Entorhinal gyrus nTPM: 512.4
2117
Female, age 91, right hemisphere
800.4
2686
Male, age 75, right hemisphere
502.9
1938
Female, age 85, left hemisphere
489.2
2764
Male, age 80, right hemisphere
484.0
1787
Male, age 76, left hemisphere
434.2
2613
Female, age 94, left hemisphere
363.7
Hippocampus, CA1 nTPM: 459.2
2527
Male, age 74, both hemispheres
569.9
1873
Female, age 85, both hemispheres
511.6
2082
Female, age 91, right hemisphere
462.4
2045
Male, age 76, both hemispheres
400.0
2749
Male, age 80, left hemisphere
352.1
Hippocampus, CA2 nTPM: 504.3
1963
Male, age 80, left hemisphere
566.0
2249
Male, age 74, both hemispheres
547.4
2113
Female, age 91, right hemisphere
530.0
1940
Female, age 85, left hemisphere
514.0
2437
Female, age 94, left hemisphere
513.5
1892
Male, age 76, both hemispheres
355.2
Hippocampus, CA3 nTPM: 417.6
1891
Female, age 85, both hemispheres
703.8
1867
Male, age 76, both hemispheres
450.0
2436
Male, age 74, both hemispheres
406.2
2137
Male, age 80, left hemisphere
330.3
2861
Female, age 67, both hemispheres
311.3
2620
Female, age 94, left hemisphere
304.2
Parahippocampal cortex nTPM: 479.0
2692
Male, age 74, both hemispheres
619.8
2018
Male, age 76, both hemispheres
543.7
2532
Female, age 72, left hemisphere
517.2
1990
Female, age 91, right hemisphere
492.8
1933
Female, age 85, both hemispheres
488.0
1850
Male, age 80, both hemispheres
479.0
2245
Female, age 91, both hemispheres
464.0
2693
Female, age 94, both hemispheres
429.0
2250
Female, age 67, right hemisphere
426.8
2622
Female, age 67, right hemisphere
330.0
Perirhinal gyrus nTPM: 367.1
2521
Female, age 94, right hemisphere
413.3
2848
Male, age 76, right hemisphere
367.2
1794
Male, age 80, right hemisphere
363.5
1847
Female, age 91, left hemisphere
356.4
1841
Female, age 85, right hemisphere
334.9
Subiculum nTPM: 652.4
2042
Male, age 76, both hemispheres
827.0
1901
Male, age 80, both hemispheres
751.4
2438
Female, age 94, left hemisphere
660.6
1977
Female, age 85, both hemispheres
582.7
2619
Male, age 74, both hemispheres
549.9
2729
Female, age 91, right hemisphere
542.9
HIPPOCAMPAL FORMATION - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
155.2
GTEx sample id
Sample description
nTPM
Brain - Hippocampus Average nTPM: 155.2
Samples: 197
Max nTPM: 351.9
Min nTPM: 52.9
Std nTPM: 65.3
Median nTPM: 139.8
GTEX-13QIC-0011-R1a-SM-5O9CJ
60-69 years, female
351.9
GTEX-1H23P-0011-R1a-SM-ACKVC
60-69 years, male
350.6
GTEX-17MF6-0011-R1a-SM-72D6O
40-49 years, male
343.4
GTEX-11ZVC-0011-R1b-SM-5BC6M
50-59 years, female
311.3
GTEX-11ZTS-0011-R1a-SM-5BC71
60-69 years, female
311.1
GTEX-13RTJ-0011-R1a-SM-5O9D9
60-69 years, male
310.6
GTEX-UTHO-0011-R1A-SM-3GIJO
60-69 years, male
302.8
GTEX-1212Z-0011-R1b-SM-5BC72
60-69 years, male
294.4
GTEX-18A6Q-0011-R1b-SM-731DI
60-69 years, male
292.7
GTEX-145LU-0011-R1a-SM-5Q5CE
50-59 years, male
291.7
GTEX-1H4P4-0011-R1b-SM-CL54V
50-59 years, male
286.8
GTEX-13NZA-0011-R1b-SM-5LUAF
60-69 years, male
282.8
GTEX-13QJC-0011-R1b-SM-5S2UU
60-69 years, female
278.4
GTEX-NPJ8-0011-R1a-SM-33HCB
40-49 years, male
277.0
GTEX-QMR6-0011-R1A-SM-32PKW
50-59 years, male
275.6
GTEX-11UD1-0011-R1b-SM-5BC7D
40-49 years, female
272.9
GTEX-1C6VQ-0011-R1a-SM-7P8Q2
50-59 years, male
265.3
GTEX-14LZ3-0011-R1a-SM-69LP5
60-69 years, female
259.1
GTEX-1LB8K-0011-R1b-SM-EZ6MV
50-59 years, male
258.9
GTEX-15UF6-0011-R1a-SM-9QEGH
70-79 years, female
255.8
GTEX-1I1GV-0011-R1a-SM-CL559
60-69 years, male
251.9
GTEX-WZTO-0011-R1B-SM-3NMAR
40-49 years, male
248.9
GTEX-13OVL-0011-R1a-SM-5L3H5
50-59 years, male
240.7
GTEX-11GSO-0011-R1b-SM-57WD3
60-69 years, male
240.1
GTEX-13JVG-0011-R1a-SM-5KM32
60-69 years, male
236.6
GTEX-XMD1-0011-R1A-SM-4AT4C
60-69 years, male
233.5
GTEX-13S7M-0011-R1b-SM-5PNZE
60-69 years, female
231.9
GTEX-1GN2E-0011-R1b-SM-CE6RJ
60-69 years, male
225.1
GTEX-PWO3-0011-R1A-SM-2I5EW
60-69 years, female
222.4
GTEX-1H3O1-0011-R1b-SM-CL554
60-69 years, male
221.1
GTEX-1E2YA-0011-R1b-SM-CJI29
50-59 years, male
219.8
GTEX-P44H-0011-R1A-SM-3NM8J
40-49 years, male
219.3
GTEX-17EVP-0011-R1a-SM-7DHLA
40-49 years, male
218.6
GTEX-13RTL-0011-R1a-SM-5PNZ8
40-49 years, male
217.2
GTEX-144GO-0011-R1a-SM-5PNWO
60-69 years, male
212.4
GTEX-145LS-0011-R1b-SM-5PNUP
60-69 years, female
208.0
GTEX-1HBPI-0011-R1b-SM-A9SKF
50-59 years, male
208.0
GTEX-13OW5-0011-R1b-SM-5L3GE
60-69 years, male
206.8
GTEX-1CAV2-0011-R1a-SM-ARZML
40-49 years, female
204.8
GTEX-16GPK-0011-R1b-SM-7EWDH
60-69 years, male
203.8
GTEX-ZAB4-0011-R1a-SM-4RGNO
40-49 years, male
203.7
GTEX-1H1CY-0011-R1a-SM-CKZOZ
60-69 years, female
201.1
GTEX-1A32A-0011-R1a-SM-7P8SQ
50-59 years, female
199.7
GTEX-1HGF4-0011-R1a-SM-CJI3S
60-69 years, male
198.8
GTEX-14PQA-0011-R1b-SM-6EU1G
50-59 years, female
197.8
GTEX-1BAJH-0011-R1a-SM-7P8SV
70-79 years, male
197.7
GTEX-14PJO-0011-R1b-SM-6AJAK
60-69 years, male
195.5
GTEX-1J8Q2-0011-R1a-SM-D4P2D
60-69 years, male
193.0
GTEX-16NPV-0011-R1b-SM-7MGVZ
50-59 years, female
192.6
GTEX-QDT8-0011-R1A-SM-32PKS
30-39 years, female
191.4
GTEX-1HR98-0011-R1a-SM-ARZLQ
60-69 years, male
190.3
GTEX-ZVZQ-0011-R1a-SM-57WBU
60-69 years, female
189.8
GTEX-12WSH-0011-R1a-SM-5GU5V
50-59 years, male
188.4
GTEX-17EVQ-0011-R1a-SM-7189S
70-79 years, male
185.4
GTEX-1EH9U-0011-R1b-SM-CJI2B
60-69 years, male
184.1
GTEX-ZUA1-0011-R1a-SM-4YCE2
40-49 years, male
183.5
GTEX-13G51-0011-R1a-SM-5LZYR
60-69 years, male
181.8
GTEX-13OW8-0011-R1a-SM-5L3HI
60-69 years, male
181.6
GTEX-14E7W-0011-R1b-SM-5YYAT
70-79 years, male
181.0
GTEX-QVUS-0011-R1A-SM-3GAD2
60-69 years, female
178.9
GTEX-T6MN-0011-R1A-SM-32QOY
50-59 years, male
176.6
GTEX-12ZZX-0011-R1a-SM-5EQ6B
40-49 years, female
176.4
GTEX-15ER7-0011-R1b-SM-7KUE1
20-29 years, female
176.3
GTEX-1I1GQ-0011-R1a-SM-CY8GG
50-59 years, male
175.9
GTEX-11WQC-0011-R1b-SM-DO932
60-69 years, male
175.5
GTEX-ZE7O-0011-R1a-SM-57WDM
50-59 years, female
175.4
GTEX-13FHP-0011-R1b-SM-5K7XL
50-59 years, male
175.2
GTEX-1F6IF-0011-R1b-SM-9WG78
60-69 years, male
174.1
GTEX-1A8G6-0011-R1a-SM-7P8PC
60-69 years, male
172.2
GTEX-1C64N-0011-R1b-SM-7P8Q7
50-59 years, male
170.7
GTEX-1F75W-0011-R1a-SM-ARU81
60-69 years, male
170.7
GTEX-11TUW-0011-R1a-SM-DO92S
60-69 years, male
170.0
GTEX-13OW6-0011-R1a-SM-5L3HQ
50-59 years, male
168.5
GTEX-1GF9V-0011-R1a-SM-CKZNQ
60-69 years, male
166.6
GTEX-YJ89-0011-R1a-SM-4RGLS
60-69 years, male
163.9
GTEX-17HII-0011-R1b-SM-7MGVW
50-59 years, male
161.6
GTEX-183WM-0011-R1a-SM-718A8
70-79 years, female
161.3
GTEX-17JCI-0011-R1b-SM-718A3
60-69 years, female
161.2
GTEX-1HSMO-0011-R1a-SM-CM2SV
60-69 years, male
160.9
GTEX-13SLW-0011-R1a-SM-5S2W7
70-79 years, male
160.7
GTEX-1HSKV-0011-R1b-SM-CMKH7
60-69 years, male
160.6
GTEX-15DCD-0011-R1b-SM-6LPIJ
70-79 years, female
158.8
GTEX-1E1VI-0011-R1a-SM-ARZMM
50-59 years, male
158.5
GTEX-13CF2-0011-R1a-SM-5LZY1
60-69 years, male
158.0
GTEX-132Q8-0011-R1a-SM-5EGLK
60-69 years, male
157.2
GTEX-1CB4J-0011-R1a-SM-9WG64
60-69 years, male
156.0
GTEX-1C6VR-0011-R1a-SM-7MXUE
60-69 years, male
154.6
GTEX-14PJM-0011-R1a-SM-CNPO3
50-59 years, female
152.5
GTEX-1EKGG-0011-R1b-SM-9QEI1
60-69 years, male
151.5
GTEX-1313W-0011-R1b-SM-5EQ4A
50-59 years, female
151.1
GTEX-1H1DG-0011-R1b-SM-CKZP1
70-79 years, male
147.6
GTEX-13OVJ-0011-R1b-SM-5L3I6
50-59 years, female
147.5
GTEX-13NYS-0011-R1b-SM-5MR55
60-69 years, male
146.4
GTEX-16XZZ-0011-R1a-SM-7LTAH
60-69 years, male
146.2
GTEX-1B933-0011-R1b-SM-9QEGW
50-59 years, female
142.8
GTEX-13N2G-0011-R1b-SM-5MR3G
60-69 years, male
141.9
GTEX-1H3VE-0011-R1a-SM-A9G1K
40-49 years, male
141.9
GTEX-QVJO-0011-R1A-SM-2S1QI
60-69 years, female
141.0
GTEX-13PDP-0011-R1a-SM-5PNX5
60-69 years, male
139.8
GTEX-13FHO-0011-R1b-SM-5KLZG
60-69 years, male
139.2
GTEX-1GN73-0011-R1a-SM-CKZNT
60-69 years, male
137.9
GTEX-ZDXO-0011-R1a-SM-4WKF4
60-69 years, male
137.8
GTEX-1B8L1-0011-R1a-SM-7P8SS
60-69 years, male
137.8
GTEX-X4XX-0011-R1B-SM-3P622
60-69 years, male
137.2
GTEX-13N1W-0011-R1b-SM-5MR4T
70-79 years, male
136.7
GTEX-1LG7Y-0011-R1a-SM-EYYWV
50-59 years, male
136.5
GTEX-14ABY-0011-R1a-SM-6EU2W
50-59 years, male
135.8
GTEX-11DXW-0011-R1a-SM-DNZZD
40-49 years, male
135.6
GTEX-1A3MX-0011-R1b-SM-7P8PH
60-69 years, male
135.6
GTEX-13FTY-0011-R1a-SM-5LZXE
40-49 years, female
134.7
GTEX-13OW7-0011-R1b-SM-5L3HF
50-59 years, male
134.3
GTEX-PVOW-0011-R1A-SM-32PL6
40-49 years, male
134.0
GTEX-14ASI-0011-R1b-SM-5S2TY
60-69 years, male
133.5
GTEX-1I1GS-0011-R1a-SM-CJI43
60-69 years, male
131.6
GTEX-12WSF-0011-R1a-SM-5DUVI
70-79 years, male
129.0
GTEX-1GN1U-0011-R1a-SM-CJI25
50-59 years, female
127.8
GTEX-144GL-0011-R1a-SM-5PNZ5
50-59 years, male
127.6
GTEX-1B8SF-0011-R1b-SM-7P8Q8
60-69 years, male
127.0
GTEX-1HT8W-0011-R1b-SM-CJI3V
30-39 years, male
126.7
GTEX-17HHY-0011-R1a-SM-7189V
50-59 years, male
125.6
GTEX-12WSM-0011-R1a-SM-5LZW6
60-69 years, male
124.6
GTEX-16Z82-0011-R1b-SM-7EPHZ
60-69 years, male
124.6
GTEX-12WSD-0011-R1b-SM-5LZVY
60-69 years, female
124.4
GTEX-13NZ8-0011-R1b-SM-5KM3V
60-69 years, female
123.7
GTEX-ZF28-0011-R1a-SM-4WWD1
60-69 years, male
123.6
GTEX-R55E-0011-R1A-SM-2TC6N
20-29 years, male
123.5
GTEX-131YS-0011-R1a-SM-5DUXC
60-69 years, female
123.2
GTEX-1GMR8-0011-R1b-SM-CJI2O
50-59 years, female
121.2
GTEX-NPJ7-0011-R1a-SM-3GACT
60-69 years, female
119.3
GTEX-Q2AG-0011-R1A-SM-2HMJI
40-49 years, female
119.2
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y
40-49 years, male
118.4
GTEX-13X6I-0011-R1b-SM-5PNZC
60-69 years, male
117.7
GTEX-OHPN-0011-R1A-SM-2I5GB
60-69 years, female
117.6
GTEX-1AX9I-0011-R1b-SM-7RHG2
60-69 years, male
117.1
GTEX-N7MT-0011-R1a-SM-CNPO1
60-69 years, female
115.5
GTEX-1B996-0011-R1b-SM-7P8PO
60-69 years, male
115.4
GTEX-WVLH-0011-R1A-SM-4MVOK
50-59 years, male
113.8
GTEX-1F6I4-0011-R1a-SM-9OSWU
60-69 years, male
112.5
GTEX-14E6D-0011-R1b-SM-5YYAW
50-59 years, male
111.3
GTEX-11ONC-0011-R1a-SM-57WD4
60-69 years, male
110.7
GTEX-1I1HK-0011-R1b-SM-CM2T7
60-69 years, male
109.0
GTEX-1H3NZ-0011-R1a-SM-CKZP5
60-69 years, male
108.9
GTEX-1GTWX-0011-R1a-SM-CE6RL
60-69 years, male
107.7
GTEX-WL46-0011-R1A-SM-3LK6M
50-59 years, male
106.8
GTEX-1H1ZS-0011-R1b-SM-A9G1E
70-79 years, male
106.8
GTEX-16YQH-0011-R1a-SM-7LT8R
30-39 years, male
106.2
GTEX-13112-0011-R1b-SM-5HL7K
50-59 years, male
105.9
GTEX-1IY9M-0011-R1a-SM-EXURZ
60-69 years, male
105.6
GTEX-1IKK5-0011-R1b-SM-CE6SQ
60-69 years, male
103.5
GTEX-17F97-0011-R1b-SM-7IGM9
50-59 years, male
103.0
GTEX-S7SE-0011-R1A-SM-2XCDE
50-59 years, male
102.7
GTEX-1IOXB-0011-R1a-SM-D4P27
50-59 years, male
102.6
GTEX-11GSP-0011-R1a-SM-9QEJ3
60-69 years, female
102.4
GTEX-1J1OQ-0011-R1a-SM-A9G1Z
40-49 years, female
102.3
GTEX-15CHQ-0011-R1a-SM-COH27
60-69 years, male
101.6
GTEX-14PN4-0011-R1b-SM-69LP8
50-59 years, male
101.0
GTEX-11EI6-0011-R1a-SM-DO93L
60-69 years, male
100.7
GTEX-13NYB-0011-R1b-SM-5KM4F
40-49 years, male
98.8
GTEX-1IDJH-0011-R1b-SM-ARU6U
70-79 years, male
98.8
GTEX-139T8-0011-R1a-SM-5HL75
60-69 years, male
98.0
GTEX-1CB4G-0011-R1b-SM-9QEHT
60-69 years, male
97.6
GTEX-1399T-0011-R1b-SM-5DUWN
60-69 years, male
97.4
GTEX-13JUV-0011-R1a-SM-5LZY4
40-49 years, female
96.7
GTEX-17HG3-0011-R1a-SM-7LG6H
30-39 years, female
96.4
GTEX-13FLW-0011-R1b-SM-5LZX2
50-59 years, male
95.8
GTEX-Y8DK-0011-R1A-SM-4RGLO
60-69 years, male
92.6
GTEX-13O3Q-0011-R1b-SM-5KM3L
50-59 years, male
88.7
GTEX-P44G-0011-R1A-SM-2I3FE
30-39 years, male
87.0
GTEX-131XH-0011-R1a-SM-5DUWA
50-59 years, male
85.7
GTEX-YFC4-0011-R1a-SM-4V6EH
40-49 years, female
84.9
GTEX-14JIY-0011-R1a-SM-68713
60-69 years, male
84.4
GTEX-1ICLZ-0011-R1b-SM-A9SM3
60-69 years, male
84.3
GTEX-14LLW-0011-R1a-SM-5ZZVD
70-79 years, female
83.9
GTEX-1EMGI-0011-R1b-SM-9OSWZ
60-69 years, male
83.2
GTEX-14C5O-0011-R1b-SM-6AJBW
60-69 years, male
83.1
GTEX-N7MS-0011-R1a-SM-2HMJG
60-69 years, male
82.7
GTEX-14BIM-0011-R1a-SM-69LQI
60-69 years, female
81.7
GTEX-139TT-0011-R1a-SM-5LZVD
60-69 years, male
79.9
GTEX-11GS4-0011-R1a-SM-DO129
60-69 years, male
79.3
GTEX-NL3H-0011-R1a-SM-48TDJ
60-69 years, male
77.0
GTEX-13FXS-0011-R1a-SM-5K7U6
50-59 years, male
76.4
GTEX-1GF9W-0011-R1a-SM-9QEIQ
60-69 years, male
76.2
GTEX-T5JC-0011-R1A-SM-32PM6
20-29 years, male
75.7
GTEX-1F48J-0011-R1a-SM-9QEIC
50-59 years, female
75.2
GTEX-TSE9-0011-R1A-SM-3DB7E
60-69 years, female
75.0
GTEX-1F75A-0011-R1b-SM-CE6RA
50-59 years, male
74.8
GTEX-WWYW-0011-R1A-SM-3TW8G
50-59 years, female
74.3
GTEX-145MH-0011-R1b-SM-5PNWY
50-59 years, male
72.4
GTEX-X4EP-0011-R1A-SM-3P624
60-69 years, female
71.8
GTEX-1GZHY-0011-R1a-SM-CE6RR
50-59 years, female
69.6
GTEX-RNOR-0011-R1A-SM-CNNP5
50-59 years, female
68.6
GTEX-13O3O-0011-R1b-SM-5KM2K
60-69 years, female
66.1
GTEX-12WSE-0011-R1b-SM-5GU4V
20-29 years, male
63.9
GTEX-WHSE-0011-R1A-SM-3P5ZK
20-29 years, male
63.6
GTEX-X585-0011-R1B-SM-46MVE
50-59 years, male
56.5
GTEX-1EX96-0011-R1a-SM-CE6R5
50-59 years, male
55.1
GTEX-1EWIQ-0011-R1a-SM-9OSX7
70-79 years, female
52.9
Show allShow less
HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
111.3
Mouse sample
Sample description
nTPM
Entorhinal cortex nTPM: 101.6
Samples: 4
Max nTPM: 121.1
Min nTPM: 88.5
Sample A
Male
121.1
Sample B
Male
96.9
Sample C
Female
99.8
Sample D
Female
88.5
Hippocampal formation nTPM: 111.3
Samples: 4
Max nTPM: 131.0
Min nTPM: 101.2
Sample A
Male
101.2
Sample B
Male
110.2
Sample C
Female
131.0
Sample D
Female
102.8
HIPPOCAMPAL FORMATION - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.