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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
25.9
nTPM
HPA Brain:
4.2
nTPM
GTEx:
25.9
nTPM
FANTOM5:
43.1
Scaled Tags Per Million
Pig:
55.5
nTPM
Mouse:
58.8
nTPM
Allen mouse:
9.8
Expression energy
MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
4.2
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 3.7
2411
Female, age 72, unknown
7.8
1870
Female, age 42, unknown
3.8
2666
Male, age 74, left hemisphere
3.6
1833
Male, age 53, unknown
3.5
2019
Male, age 18, unknown
3.4
2219
Male, age 76, both hemispheres
3.2
2586
Male, age 75, left hemisphere
3.2
2828
Female, age 72, unknown
3.1
1827
Male, age 72, unknown
2.9
1830
Male, age 51, unknown
2.7
Dorsal raphe nucleus nTPM: 4.1
2047
Male, age 72, unknown
5.6
1828
Male, age 53, unknown
4.4
2298
Female, age 72, unknown
4.1
2750
Male, age 76, both hemispheres
3.2
2016
Female, age 72, unknown
3.0
Inferior colliculus nTPM: 2.9
1848
Female, age 42, unknown
3.4
1890
Male, age 53, unknown
3.2
2097
Female, age 72, unknown
3.0
2849
Male, age 72, unknown
2.1
Median raphe nucleus nTPM: 3.1
2220
Male, age 76, midline
3.1
Periaquaductal grey, anterior nTPM: 3.1
2502
Female, age 75, unknown
3.4
1947
Male, age 18, unknown
3.1
1795
Male, age 51, unknown
2.7
Periaquaductal grey, dorsal nTPM: 2.7
2850
Male, age 76, both hemispheres
3.6
1840
Male, age 53, unknown
2.8
2464
Female, age 72, unknown
2.5
1831
Male, age 72, unknown
2.0
Periaquaductal grey, lateral nTPM: 2.9
2140
Male, age 76, both hemispheres
3.5
2272
Male, age 74, both hemispheres
2.9
2053
Male, age 18, unknown
2.3
Pretectal area nTPM: 3.6
1944
Female, age 72, unknown
8.9
1817
Female, age 42, unknown
4.0
2273
Male, age 74, both hemispheres
3.5
2667
Female, age 75, unknown
3.5
2224
Female, age 72, unknown
3.4
2316
Male, age 76, right hemisphere
3.4
1815
Male, age 53, unknown
3.1
1816
Male, age 51, unknown
2.8
2007
Male, age 72, unknown
2.6
2407
Male, age 75, both hemispheres
2.6
2825
Male, age 18, unknown
2.4
Red nucleus nTPM: 3.6
2785
Male, age 18, unknown
7.2
1904
Male, age 53, unknown
3.7
2503
Female, age 72, unknown
3.7
1954
Female, age 42, unknown
3.5
2725
Female, age 75, unknown
3.5
1865
Male, age 51, unknown
3.4
2769
Male, age 72, unknown
3.3
1821
Female, age 72, unknown
3.2
2227
Male, age 72, unknown
3.2
2588
Male, age 74, left hemisphere
3.0
2823
Male, age 76, right hemisphere
3.0
2584
Male, age 75, left hemisphere
2.0
Substantia nigra nTPM: 4.1
2241
Male, age 72, unknown
8.5
1916
Female, age 42, unknown
5.1
1851
Male, age 51, unknown
4.2
1941
Male, age 53, unknown
4.1
2665
Male, age 74, both hemispheres
3.7
2699
Male, age 18, unknown
3.6
2409
Female, age 72, unknown
3.4
2590
Female, age 75, unknown
3.2
1889
Female, age 72, unknown
2.7
2583
Male, age 75, right hemisphere
2.6
Superior colliculus nTPM: 2.9
1796
Male, age 53, unknown
3.4
1895
Male, age 76, right hemisphere
3.3
2587
Male, age 74, left hemisphere
3.3
1913
Female, age 42, unknown
3.2
2668
Female, age 75, unknown
3.2
1839
Male, age 51, unknown
2.9
1995
Male, age 72, unknown
2.7
2261
Male, age 18, unknown
2.6
2664
Male, age 75, both hemispheres
2.5
2087
Female, age 72, unknown
2.0
Ventral tegmental area nTPM: 4.2
1942
Male, age 51, unknown
6.5
1915
Female, age 42, unknown
4.6
2410
Female, age 72, unknown
4.4
2218
Male, age 76, both hemispheres
3.5
2223
Female, age 72, unknown
3.4
2021
Male, age 53, unknown
2.6
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
25.9
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 25.9
Samples: 139
Max nTPM: 53.7
Min nTPM: 11.1
Std nTPM: 8.0
Median nTPM: 24.6
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
53.7
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
48.9
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
43.5
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
41.9
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
41.4
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
40.6
GTEX-T5JC-0011-R2A-SM-32PLZ
20-29 years, male
40.5
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
39.8
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
39.8
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
38.9
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
38.3
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
37.5
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
37.3
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
35.9
GTEX-N7MS-0011-R2a-SM-2HML6
60-69 years, male
35.6
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
35.6
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
35.4
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
35.3
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
35.1
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
34.6
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
34.4
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
34.3
GTEX-N7MT-0011-R2a-SM-2I3GI
60-69 years, female
34.3
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
34.0
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
33.9
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
33.7
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
33.7
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
33.6
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
33.2
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
32.8
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
32.7
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
31.4
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
31.2
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
31.1
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
30.8
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
30.7
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
30.6
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
30.5
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
30.4
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
30.3
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
30.3
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
29.9
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
29.7
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
29.5
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
29.5
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
29.4
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
29.1
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
29.0
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
29.0
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
28.8
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
28.5
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
28.3
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
28.3
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
27.9
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
27.8
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
27.7
GTEX-P44G-0011-R2A-SM-2XCD2
30-39 years, male
27.1
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
26.9
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
26.9
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
26.1
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
25.8
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
25.8
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
25.4
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
25.3
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
25.2
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
25.0
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
25.0
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
25.0
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
24.9
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
24.6
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
24.5
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
24.2
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
24.2
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
24.1
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
24.1
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
24.0
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
23.9
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
23.8
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
23.7
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
23.5
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
23.4
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
23.3
GTEX-NL4W-0011-R2a-SM-2I5GV
50-59 years, male
23.0
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
22.9
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
22.9
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
22.8
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
22.6
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
22.4
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
22.3
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
22.2
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
21.7
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
21.7
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
21.6
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
21.3
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
21.3
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
21.1
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
21.1
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
20.9
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
20.9
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
20.8
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
20.7
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
20.3
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
20.1
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
20.1
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
20.1
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
19.9
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
19.8
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
19.7
GTEX-NPJ8-0011-R2a-SM-2TC6M
40-49 years, male
19.7
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
19.5
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
19.1
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
19.1
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
19.0
GTEX-PWO3-0011-R2A-SM-2S1OX
60-69 years, female
18.1
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
18.0
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
17.7
GTEX-18464-0011-R2a-SM-731AL
50-59 years, male
17.7
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
17.7
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
17.7
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
17.5
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
17.0
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
17.0
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
16.8
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
16.6
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
16.3
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
15.9
GTEX-OXRO-0011-R2A-SM-3NB1W
60-69 years, female
15.7
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
15.7
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
15.7
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
15.4
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
13.7
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
13.4
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
13.3
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
12.9
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
12.1
GTEX-1IKOH-0011-R2a-SM-CMKHO
60-69 years, female
12.1
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
11.4
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
11.4
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
11.1
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MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
58.8
Mouse sample
Sample description
nTPM
Midbrain nTPM: 58.8
Samples: 4
Max nTPM: 62.3
Min nTPM: 54.0
Sample A
Male
62.3
Sample B
Male
54.0
Sample C
Female
59.1
Sample D
Female
59.6
MIDBRAIN - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.