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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
7.4
nTPM
HPA Brain:
70.6
nTPM
GTEx:
7.4
nTPM
FANTOM5:
71.0
Scaled Tags Per Million
Pig:
29.9
nTPM
Mouse:
13.5
nTPM
Allen mouse:
5.1
Expression energy
MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
70.6
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 52.3
2219
Male, age 76, both hemispheres
64.3
2411
Female, age 72, unknown
62.8
1833
Male, age 53, unknown
54.1
2019
Male, age 18, unknown
52.6
1830
Male, age 51, unknown
50.9
1827
Male, age 72, unknown
50.6
1870
Female, age 42, unknown
48.8
2666
Male, age 74, left hemisphere
47.2
2586
Male, age 75, left hemisphere
46.9
2828
Female, age 72, unknown
44.5
Dorsal raphe nucleus nTPM: 48.9
2750
Male, age 76, both hemispheres
65.7
2047
Male, age 72, unknown
51.6
2298
Female, age 72, unknown
45.5
1828
Male, age 53, unknown
44.0
2016
Female, age 72, unknown
37.8
Inferior colliculus nTPM: 42.1
2097
Female, age 72, unknown
48.5
1890
Male, age 53, unknown
42.5
1848
Female, age 42, unknown
40.6
2849
Male, age 72, unknown
36.7
Median raphe nucleus nTPM: 70.6
2220
Male, age 76, midline
70.6
Periaquaductal grey, anterior nTPM: 42.6
1795
Male, age 51, unknown
43.8
1947
Male, age 18, unknown
43.2
2502
Female, age 75, unknown
40.6
Periaquaductal grey, dorsal nTPM: 36.1
2464
Female, age 72, unknown
42.9
1831
Male, age 72, unknown
38.7
1840
Male, age 53, unknown
35.0
2850
Male, age 76, both hemispheres
27.9
Periaquaductal grey, lateral nTPM: 32.5
2053
Male, age 18, unknown
36.4
2272
Male, age 74, both hemispheres
34.4
2140
Male, age 76, both hemispheres
26.8
Pretectal area nTPM: 44.6
2007
Male, age 72, unknown
55.4
1815
Male, age 53, unknown
55.3
1817
Female, age 42, unknown
50.5
1816
Male, age 51, unknown
49.1
1944
Female, age 72, unknown
46.7
2407
Male, age 75, both hemispheres
44.1
2224
Female, age 72, unknown
43.6
2316
Male, age 76, right hemisphere
39.5
2825
Male, age 18, unknown
38.8
2667
Female, age 75, unknown
38.2
2273
Male, age 74, both hemispheres
29.7
Red nucleus nTPM: 49.6
1904
Male, age 53, unknown
54.9
2785
Male, age 18, unknown
53.9
1821
Female, age 72, unknown
53.2
2503
Female, age 72, unknown
52.7
2588
Male, age 74, left hemisphere
52.0
1865
Male, age 51, unknown
50.6
2584
Male, age 75, left hemisphere
49.5
2823
Male, age 76, right hemisphere
49.5
1954
Female, age 42, unknown
48.4
2227
Male, age 72, unknown
45.1
2769
Male, age 72, unknown
44.3
2725
Female, age 75, unknown
41.0
Substantia nigra nTPM: 50.9
1916
Female, age 42, unknown
64.6
2409
Female, age 72, unknown
59.2
2241
Male, age 72, unknown
57.4
1851
Male, age 51, unknown
56.9
1889
Female, age 72, unknown
53.3
2583
Male, age 75, right hemisphere
50.0
1941
Male, age 53, unknown
45.3
2590
Female, age 75, unknown
42.3
2699
Male, age 18, unknown
41.7
2665
Male, age 74, both hemispheres
38.2
Superior colliculus nTPM: 47.0
2668
Female, age 75, unknown
78.6
2261
Male, age 18, unknown
49.4
1913
Female, age 42, unknown
48.9
1796
Male, age 53, unknown
47.1
1895
Male, age 76, right hemisphere
46.9
2587
Male, age 74, left hemisphere
45.0
2087
Female, age 72, unknown
40.7
1839
Male, age 51, unknown
40.6
1995
Male, age 72, unknown
39.1
2664
Male, age 75, both hemispheres
33.3
Ventral tegmental area nTPM: 53.3
2410
Female, age 72, unknown
65.5
2218
Male, age 76, both hemispheres
58.7
2223
Female, age 72, unknown
57.0
1915
Female, age 42, unknown
50.2
1942
Male, age 51, unknown
45.5
2021
Male, age 53, unknown
42.9
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
7.4
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 7.4
Samples: 139
Max nTPM: 13.6
Min nTPM: 2.2
Std nTPM: 2.2
Median nTPM: 7.3
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
13.6
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
12.9
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
12.3
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
12.2
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
11.7
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
11.7
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
11.6
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
11.6
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
11.6
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
11.4
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
11.3
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
11.0
GTEX-N7MT-0011-R2a-SM-2I3GI
60-69 years, female
11.0
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
10.6
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
10.4
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
9.9
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
9.8
GTEX-N7MS-0011-R2a-SM-2HML6
60-69 years, male
9.8
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
9.7
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
9.7
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
9.5
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
9.5
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
9.5
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
9.4
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
9.4
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
9.4
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
9.3
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
9.2
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
9.2
GTEX-T5JC-0011-R2A-SM-32PLZ
20-29 years, male
9.2
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
9.1
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
9.1
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
9.0
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
9.0
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
8.9
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
8.9
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
8.9
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
8.8
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
8.8
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
8.8
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
8.7
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
8.7
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
8.6
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
8.4
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
8.3
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
8.1
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
8.1
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
8.1
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
8.1
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
8.0
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
7.9
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
7.8
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
7.8
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
7.8
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
7.8
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
7.7
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
7.7
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
7.6
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
7.6
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
7.5
GTEX-18464-0011-R2a-SM-731AL
50-59 years, male
7.5
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
7.5
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
7.5
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
7.5
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
7.4
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
7.4
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
7.4
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
7.3
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
7.3
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
7.3
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
7.2
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
7.1
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
7.1
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
7.1
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
7.1
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
7.1
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
7.1
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
7.0
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
7.0
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
7.0
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
7.0
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
7.0
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
6.9
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
6.8
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
6.8
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
6.8
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
6.7
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
6.7
GTEX-P44G-0011-R2A-SM-2XCD2
30-39 years, male
6.7
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
6.6
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
6.6
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
6.5
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
6.4
GTEX-NL4W-0011-R2a-SM-2I5GV
50-59 years, male
6.4
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
6.4
GTEX-OXRO-0011-R2A-SM-3NB1W
60-69 years, female
6.3
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
6.2
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
6.2
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
6.2
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
6.1
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
6.1
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
6.0
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
6.0
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
5.9
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
5.9
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
5.7
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
5.6
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
5.6
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
5.6
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
5.6
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
5.6
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
5.6
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
5.6
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
5.5
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
5.5
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
5.4
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
5.3
GTEX-1IKOH-0011-R2a-SM-CMKHO
60-69 years, female
5.3
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
5.2
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
5.2
GTEX-PWO3-0011-R2A-SM-2S1OX
60-69 years, female
5.0
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
5.0
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
4.9
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
4.9
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
4.9
GTEX-NPJ8-0011-R2a-SM-2TC6M
40-49 years, male
4.8
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
4.5
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
4.4
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
4.3
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
4.0
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
4.0
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
4.0
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
3.7
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
3.4
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
3.3
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
3.1
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
2.6
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
2.4
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
2.2
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MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
13.5
Mouse sample
Sample description
nTPM
Midbrain nTPM: 13.5
Samples: 4
Max nTPM: 15.2
Min nTPM: 10.1
Sample A
Male
10.1
Sample B
Male
15.2
Sample C
Female
14.0
Sample D
Female
14.7
MIDBRAIN - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.