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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
h
m
l
n
Glial cells:
Not detected
Neuronal cells:
Medium
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
8.5
nTPM
HPA Brain:
66.1
nTPM
GTEx:
8.5
nTPM
FANTOM5:
58.1
Scaled Tags Per Million
Pig:
40.5
nTPM
Mouse:
21.2
nTPM
Allen mouse:
9.2
Expression energy
HIPPOCAMPUS - Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
Antibody HPA036350
Glial cells
Not detected
Neuronal cells
Medium
HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
66.1
Sample id
Sample description
nTPM
Hippocampus nTPM: 57.7
1855
Male, age 76, left hemisphere
68.4
2148
Female, age 91, left hemisphere
63.9
1898
Male, age 80, left hemisphere
61.5
2621
Female, age 67, right hemisphere
55.4
1911
Female, age 85, right hemisphere
49.6
2529
Female, age 94, left hemisphere
47.4
Dentate gyrus nTPM: 64.9
2531
Female, age 67, both hemispheres
84.3
1927
Female, age 91, both hemispheres
73.1
2010
Male, age 76, both hemispheres
63.9
2246
Female, age 85, both hemispheres
62.7
2528
Male, age 74, both hemispheres
54.3
2530
Female, age 94, left hemisphere
50.9
Entorhinal gyrus nTPM: 57.5
2764
Male, age 80, right hemisphere
68.4
2613
Female, age 94, left hemisphere
59.8
1938
Female, age 85, left hemisphere
58.8
1787
Male, age 76, left hemisphere
57.4
2117
Female, age 91, right hemisphere
57.0
2686
Male, age 75, right hemisphere
43.9
Hippocampus, CA1 nTPM: 66.0
2045
Male, age 76, both hemispheres
97.1
1873
Female, age 85, both hemispheres
68.4
2749
Male, age 80, left hemisphere
65.8
2082
Female, age 91, right hemisphere
49.7
2527
Male, age 74, both hemispheres
49.1
Hippocampus, CA2 nTPM: 54.5
1963
Male, age 80, left hemisphere
71.5
1892
Male, age 76, both hemispheres
68.7
2113
Female, age 91, right hemisphere
51.8
1940
Female, age 85, left hemisphere
47.2
2437
Female, age 94, left hemisphere
45.7
2249
Male, age 74, both hemispheres
42.3
Hippocampus, CA3 nTPM: 60.3
2620
Female, age 94, left hemisphere
83.4
2861
Female, age 67, both hemispheres
62.2
1891
Female, age 85, both hemispheres
61.1
1867
Male, age 76, both hemispheres
58.8
2137
Male, age 80, left hemisphere
56.2
2436
Male, age 74, both hemispheres
39.9
Parahippocampal cortex nTPM: 53.2
1850
Male, age 80, both hemispheres
62.8
1933
Female, age 85, both hemispheres
59.4
2245
Female, age 91, both hemispheres
58.3
1990
Female, age 91, right hemisphere
56.3
2532
Female, age 72, left hemisphere
55.5
2693
Female, age 94, both hemispheres
52.8
2018
Male, age 76, both hemispheres
51.8
2250
Female, age 67, right hemisphere
51.1
2692
Male, age 74, both hemispheres
45.8
2622
Female, age 67, right hemisphere
37.9
Perirhinal gyrus nTPM: 66.1
1847
Female, age 91, left hemisphere
68.6
1794
Male, age 80, right hemisphere
68.3
2521
Female, age 94, right hemisphere
66.2
2848
Male, age 76, right hemisphere
66.0
1841
Female, age 85, right hemisphere
61.6
Subiculum nTPM: 53.0
1977
Female, age 85, both hemispheres
65.5
2729
Female, age 91, right hemisphere
55.8
1901
Male, age 80, both hemispheres
54.7
2438
Female, age 94, left hemisphere
50.7
2042
Male, age 76, both hemispheres
46.9
2619
Male, age 74, both hemispheres
44.3
HIPPOCAMPAL FORMATION - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
8.5
GTEx sample id
Sample description
nTPM
Brain - Hippocampus Average nTPM: 8.5
Samples: 197
Max nTPM: 18.6
Min nTPM: 2.4
Std nTPM: 2.5
Median nTPM: 8.2
GTEX-13NZ8-0011-R1b-SM-5KM3V
60-69 years, female
18.6
GTEX-131XH-0011-R1a-SM-5DUWA
50-59 years, male
18.0
GTEX-1H23P-0011-R1a-SM-ACKVC
60-69 years, male
16.5
GTEX-17MF6-0011-R1a-SM-72D6O
40-49 years, male
14.7
GTEX-15ER7-0011-R1b-SM-7KUE1
20-29 years, female
14.6
GTEX-13QIC-0011-R1a-SM-5O9CJ
60-69 years, female
14.5
GTEX-13QJC-0011-R1b-SM-5S2UU
60-69 years, female
14.3
GTEX-11GSP-0011-R1a-SM-9QEJ3
60-69 years, female
13.9
GTEX-Y8DK-0011-R1A-SM-4RGLO
60-69 years, male
13.8
GTEX-14LZ3-0011-R1a-SM-69LP5
60-69 years, female
13.4
GTEX-1IY9M-0011-R1a-SM-EXURZ
60-69 years, male
13.3
GTEX-145LU-0011-R1a-SM-5Q5CE
50-59 years, male
13.1
GTEX-11WQC-0011-R1b-SM-DO932
60-69 years, male
12.9
GTEX-1H1ZS-0011-R1b-SM-A9G1E
70-79 years, male
12.7
GTEX-15UF6-0011-R1a-SM-9QEGH
70-79 years, female
12.5
GTEX-1E2YA-0011-R1b-SM-CJI29
50-59 years, male
12.5
GTEX-14BIM-0011-R1a-SM-69LQI
60-69 years, female
12.4
GTEX-18A6Q-0011-R1b-SM-731DI
60-69 years, male
12.3
GTEX-UTHO-0011-R1A-SM-3GIJO
60-69 years, male
12.3
GTEX-NPJ8-0011-R1a-SM-33HCB
40-49 years, male
11.9
GTEX-13NZA-0011-R1b-SM-5LUAF
60-69 years, male
11.7
GTEX-13RTJ-0011-R1a-SM-5O9D9
60-69 years, male
11.7
GTEX-1B8L1-0011-R1a-SM-7P8SS
60-69 years, male
11.7
GTEX-1I1GV-0011-R1a-SM-CL559
60-69 years, male
11.7
GTEX-1212Z-0011-R1b-SM-5BC72
60-69 years, male
11.4
GTEX-11ONC-0011-R1a-SM-57WD4
60-69 years, male
11.3
GTEX-13S7M-0011-R1b-SM-5PNZE
60-69 years, female
11.3
GTEX-T6MN-0011-R1A-SM-32QOY
50-59 years, male
11.1
GTEX-13O3O-0011-R1b-SM-5KM2K
60-69 years, female
11.0
GTEX-14C5O-0011-R1b-SM-6AJBW
60-69 years, male
11.0
GTEX-WL46-0011-R1A-SM-3LK6M
50-59 years, male
11.0
GTEX-WZTO-0011-R1B-SM-3NMAR
40-49 years, male
11.0
GTEX-S7SE-0011-R1A-SM-2XCDE
50-59 years, male
10.5
GTEX-1IKK5-0011-R1b-SM-CE6SQ
60-69 years, male
10.5
GTEX-1LB8K-0011-R1b-SM-EZ6MV
50-59 years, male
10.5
GTEX-13OVL-0011-R1a-SM-5L3H5
50-59 years, male
10.2
GTEX-NPJ7-0011-R1a-SM-3GACT
60-69 years, female
10.2
GTEX-1GN2E-0011-R1b-SM-CE6RJ
60-69 years, male
10.2
GTEX-145MH-0011-R1b-SM-5PNWY
50-59 years, male
10.1
GTEX-ZAB4-0011-R1a-SM-4RGNO
40-49 years, male
10.1
GTEX-1H3O1-0011-R1b-SM-CL554
60-69 years, male
10.1
GTEX-1H4P4-0011-R1b-SM-CL54V
50-59 years, male
10.1
GTEX-11UD1-0011-R1b-SM-5BC7D
40-49 years, female
10.0
GTEX-13JUV-0011-R1a-SM-5LZY4
40-49 years, female
10.0
GTEX-13OW6-0011-R1a-SM-5L3HQ
50-59 years, male
9.9
GTEX-1EMGI-0011-R1b-SM-9OSWZ
60-69 years, male
9.9
GTEX-1313W-0011-R1b-SM-5EQ4A
50-59 years, female
9.8
GTEX-144GO-0011-R1a-SM-5PNWO
60-69 years, male
9.8
GTEX-16YQH-0011-R1a-SM-7LT8R
30-39 years, male
9.8
GTEX-17EVP-0011-R1a-SM-7DHLA
40-49 years, male
9.8
GTEX-XMD1-0011-R1A-SM-4AT4C
60-69 years, male
9.8
GTEX-13G51-0011-R1a-SM-5LZYR
60-69 years, male
9.7
GTEX-WHSE-0011-R1A-SM-3P5ZK
20-29 years, male
9.7
GTEX-11GS4-0011-R1a-SM-DO129
60-69 years, male
9.7
GTEX-R55E-0011-R1A-SM-2TC6N
20-29 years, male
9.6
GTEX-1HBPI-0011-R1b-SM-A9SKF
50-59 years, male
9.6
GTEX-RNOR-0011-R1A-SM-CNNP5
50-59 years, female
9.6
GTEX-11ZVC-0011-R1b-SM-5BC6M
50-59 years, female
9.5
GTEX-T5JC-0011-R1A-SM-32PM6
20-29 years, male
9.5
GTEX-1HSKV-0011-R1b-SM-CMKH7
60-69 years, male
9.5
GTEX-12WSF-0011-R1a-SM-5DUVI
70-79 years, male
9.4
GTEX-15DCD-0011-R1b-SM-6LPIJ
70-79 years, female
9.4
GTEX-N7MS-0011-R1a-SM-2HMJG
60-69 years, male
9.4
GTEX-PVOW-0011-R1A-SM-32PL6
40-49 years, male
9.4
GTEX-ZVZQ-0011-R1a-SM-57WBU
60-69 years, female
9.4
GTEX-1HSMO-0011-R1a-SM-CM2SV
60-69 years, male
9.4
GTEX-1J1OQ-0011-R1a-SM-A9G1Z
40-49 years, female
9.4
GTEX-139T8-0011-R1a-SM-5HL75
60-69 years, male
9.3
GTEX-13OW7-0011-R1b-SM-5L3HF
50-59 years, male
9.3
GTEX-13X6I-0011-R1b-SM-5PNZC
60-69 years, male
9.3
GTEX-14PJM-0011-R1a-SM-CNPO3
50-59 years, female
9.2
GTEX-1AX9I-0011-R1b-SM-7RHG2
60-69 years, male
9.2
GTEX-16GPK-0011-R1b-SM-7EWDH
60-69 years, male
9.1
GTEX-YFC4-0011-R1a-SM-4V6EH
40-49 years, female
9.1
GTEX-1CB4J-0011-R1a-SM-9WG64
60-69 years, male
9.0
GTEX-16Z82-0011-R1b-SM-7EPHZ
60-69 years, male
8.9
GTEX-P44H-0011-R1A-SM-3NM8J
40-49 years, male
8.9
GTEX-13RTL-0011-R1a-SM-5PNZ8
40-49 years, male
8.8
GTEX-WWYW-0011-R1A-SM-3TW8G
50-59 years, female
8.8
GTEX-1E1VI-0011-R1a-SM-ARZMM
50-59 years, male
8.8
GTEX-1H3NZ-0011-R1a-SM-CKZP5
60-69 years, male
8.8
GTEX-1HGF4-0011-R1a-SM-CJI3S
60-69 years, male
8.8
GTEX-11GSO-0011-R1b-SM-57WD3
60-69 years, male
8.7
GTEX-13PDP-0011-R1a-SM-5PNX5
60-69 years, male
8.7
GTEX-17EVQ-0011-R1a-SM-7189S
70-79 years, male
8.7
GTEX-1A3MX-0011-R1b-SM-7P8PH
60-69 years, male
8.7
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y
40-49 years, male
8.6
GTEX-1I1GS-0011-R1a-SM-CJI43
60-69 years, male
8.6
GTEX-14ABY-0011-R1a-SM-6EU2W
50-59 years, male
8.5
GTEX-14PJO-0011-R1b-SM-6AJAK
60-69 years, male
8.5
GTEX-14PQA-0011-R1b-SM-6EU1G
50-59 years, female
8.5
GTEX-Q2AG-0011-R1A-SM-2HMJI
40-49 years, female
8.5
GTEX-14JIY-0011-R1a-SM-68713
60-69 years, male
8.4
GTEX-YJ89-0011-R1a-SM-4RGLS
60-69 years, male
8.4
GTEX-1H1CY-0011-R1a-SM-CKZOZ
60-69 years, female
8.4
GTEX-11ZTS-0011-R1a-SM-5BC71
60-69 years, female
8.3
GTEX-145LS-0011-R1b-SM-5PNUP
60-69 years, female
8.3
GTEX-N7MT-0011-R1a-SM-CNPO1
60-69 years, female
8.3
GTEX-13FLW-0011-R1b-SM-5LZX2
50-59 years, male
8.2
GTEX-ZUA1-0011-R1a-SM-4YCE2
40-49 years, male
8.2
GTEX-132Q8-0011-R1a-SM-5EGLK
60-69 years, male
8.1
GTEX-1B8SF-0011-R1b-SM-7P8Q8
60-69 years, male
8.1
GTEX-12WSD-0011-R1b-SM-5LZVY
60-69 years, female
7.9
GTEX-139TT-0011-R1a-SM-5LZVD
60-69 years, male
7.9
GTEX-17F97-0011-R1b-SM-7IGM9
50-59 years, male
7.9
GTEX-QDT8-0011-R1A-SM-32PKS
30-39 years, female
7.9
GTEX-X585-0011-R1B-SM-46MVE
50-59 years, male
7.9
GTEX-1I1HK-0011-R1b-SM-CM2T7
60-69 years, male
7.9
GTEX-1C6VR-0011-R1a-SM-7MXUE
60-69 years, male
7.8
GTEX-13112-0011-R1b-SM-5HL7K
50-59 years, male
7.7
GTEX-16NPV-0011-R1b-SM-7MGVZ
50-59 years, female
7.7
GTEX-12WSE-0011-R1b-SM-5GU4V
20-29 years, male
7.6
GTEX-12WSH-0011-R1a-SM-5GU5V
50-59 years, male
7.6
GTEX-14E6D-0011-R1b-SM-5YYAW
50-59 years, male
7.6
GTEX-17HHY-0011-R1a-SM-7189V
50-59 years, male
7.6
GTEX-1F6I4-0011-R1a-SM-9OSWU
60-69 years, male
7.6
GTEX-WVLH-0011-R1A-SM-4MVOK
50-59 years, male
7.5
GTEX-1C6VQ-0011-R1a-SM-7P8Q2
50-59 years, male
7.5
GTEX-1GTWX-0011-R1a-SM-CE6RL
60-69 years, male
7.5
GTEX-14ASI-0011-R1b-SM-5S2TY
60-69 years, male
7.4
GTEX-17HII-0011-R1b-SM-7MGVW
50-59 years, male
7.4
GTEX-1C64N-0011-R1b-SM-7P8Q7
50-59 years, male
7.4
GTEX-1HT8W-0011-R1b-SM-CJI3V
30-39 years, male
7.4
GTEX-12WSM-0011-R1a-SM-5LZW6
60-69 years, male
7.3
GTEX-183WM-0011-R1a-SM-718A8
70-79 years, female
7.3
GTEX-QMR6-0011-R1A-SM-32PKW
50-59 years, male
7.3
GTEX-1EX96-0011-R1a-SM-CE6R5
50-59 years, male
7.3
GTEX-1I1GQ-0011-R1a-SM-CY8GG
50-59 years, male
7.3
GTEX-ZDXO-0011-R1a-SM-4WKF4
60-69 years, male
7.2
GTEX-11TUW-0011-R1a-SM-DO92S
60-69 years, male
7.2
GTEX-13N1W-0011-R1b-SM-5MR4T
70-79 years, male
7.1
GTEX-16XZZ-0011-R1a-SM-7LTAH
60-69 years, male
7.1
GTEX-1EKGG-0011-R1b-SM-9QEI1
60-69 years, male
7.1
GTEX-1GN73-0011-R1a-SM-CKZNT
60-69 years, male
7.1
GTEX-1ICLZ-0011-R1b-SM-A9SM3
60-69 years, male
7.1
GTEX-1IDJH-0011-R1b-SM-ARU6U
70-79 years, male
7.1
GTEX-1J8Q2-0011-R1a-SM-D4P2D
60-69 years, male
7.1
GTEX-13OW5-0011-R1b-SM-5L3GE
60-69 years, male
7.0
GTEX-OHPN-0011-R1A-SM-2I5GB
60-69 years, female
7.0
GTEX-1GF9V-0011-R1a-SM-CKZNQ
60-69 years, male
7.0
GTEX-1H1DG-0011-R1b-SM-CKZP1
70-79 years, male
7.0
GTEX-13JVG-0011-R1a-SM-5KM32
60-69 years, male
6.9
GTEX-1EWIQ-0011-R1a-SM-9OSX7
70-79 years, female
6.9
GTEX-13SLW-0011-R1a-SM-5S2W7
70-79 years, male
6.8
GTEX-NL3H-0011-R1a-SM-48TDJ
60-69 years, male
6.8
GTEX-11DXW-0011-R1a-SM-DNZZD
40-49 years, male
6.8
GTEX-1F75A-0011-R1b-SM-CE6RA
50-59 years, male
6.8
GTEX-QVJO-0011-R1A-SM-2S1QI
60-69 years, female
6.7
GTEX-1F6IF-0011-R1b-SM-9WG78
60-69 years, male
6.7
GTEX-1F75W-0011-R1a-SM-ARU81
60-69 years, male
6.7
GTEX-1IOXB-0011-R1a-SM-D4P27
50-59 years, male
6.7
GTEX-13N2G-0011-R1b-SM-5MR3G
60-69 years, male
6.6
GTEX-14E7W-0011-R1b-SM-5YYAT
70-79 years, male
6.6
GTEX-17JCI-0011-R1b-SM-718A3
60-69 years, female
6.6
GTEX-P44G-0011-R1A-SM-2I3FE
30-39 years, male
6.6
GTEX-X4XX-0011-R1B-SM-3P622
60-69 years, male
6.6
GTEX-1GF9W-0011-R1a-SM-9QEIQ
60-69 years, male
6.6
GTEX-13CF2-0011-R1a-SM-5LZY1
60-69 years, male
6.5
GTEX-1BAJH-0011-R1a-SM-7P8SV
70-79 years, male
6.5
GTEX-1CB4G-0011-R1b-SM-9QEHT
60-69 years, male
6.5
GTEX-131YS-0011-R1a-SM-5DUXC
60-69 years, female
6.4
GTEX-1HR98-0011-R1a-SM-ARZLQ
60-69 years, male
6.4
GTEX-13FHP-0011-R1b-SM-5K7XL
50-59 years, male
6.2
GTEX-13FXS-0011-R1a-SM-5K7U6
50-59 years, male
6.2
GTEX-PWO3-0011-R1A-SM-2I5EW
60-69 years, female
6.2
GTEX-15CHQ-0011-R1a-SM-COH27
60-69 years, male
6.2
GTEX-1A8G6-0011-R1a-SM-7P8PC
60-69 years, male
6.2
GTEX-ZE7O-0011-R1a-SM-57WDM
50-59 years, female
5.9
GTEX-1F48J-0011-R1a-SM-9QEIC
50-59 years, female
5.9
GTEX-17HG3-0011-R1a-SM-7LG6H
30-39 years, female
5.8
GTEX-1GN1U-0011-R1a-SM-CJI25
50-59 years, female
5.8
GTEX-1399T-0011-R1b-SM-5DUWN
60-69 years, male
5.7
GTEX-1B933-0011-R1b-SM-9QEGW
50-59 years, female
5.7
GTEX-1EH9U-0011-R1b-SM-CJI2B
60-69 years, male
5.7
GTEX-13OW8-0011-R1a-SM-5L3HI
60-69 years, male
5.6
GTEX-144GL-0011-R1a-SM-5PNZ5
50-59 years, male
5.6
GTEX-13FTY-0011-R1a-SM-5LZXE
40-49 years, female
5.5
GTEX-13NYB-0011-R1b-SM-5KM4F
40-49 years, male
5.5
GTEX-TSE9-0011-R1A-SM-3DB7E
60-69 years, female
5.5
GTEX-11EI6-0011-R1a-SM-DO93L
60-69 years, male
5.5
GTEX-13O3Q-0011-R1b-SM-5KM3L
50-59 years, male
5.4
GTEX-1LG7Y-0011-R1a-SM-EYYWV
50-59 years, male
5.4
GTEX-14LLW-0011-R1a-SM-5ZZVD
70-79 years, female
5.2
GTEX-14PN4-0011-R1b-SM-69LP8
50-59 years, male
5.2
GTEX-1CAV2-0011-R1a-SM-ARZML
40-49 years, female
5.1
GTEX-13FHO-0011-R1b-SM-5KLZG
60-69 years, male
5.0
GTEX-1H3VE-0011-R1a-SM-A9G1K
40-49 years, male
5.0
GTEX-QVUS-0011-R1A-SM-3GAD2
60-69 years, female
4.9
GTEX-ZF28-0011-R1a-SM-4WWD1
60-69 years, male
4.9
GTEX-1A32A-0011-R1a-SM-7P8SQ
50-59 years, female
4.7
GTEX-1B996-0011-R1b-SM-7P8PO
60-69 years, male
4.5
GTEX-1GMR8-0011-R1b-SM-CJI2O
50-59 years, female
4.5
GTEX-12ZZX-0011-R1a-SM-5EQ6B
40-49 years, female
4.4
GTEX-13OVJ-0011-R1b-SM-5L3I6
50-59 years, female
4.4
GTEX-1GZHY-0011-R1a-SM-CE6RR
50-59 years, female
4.4
GTEX-13NYS-0011-R1b-SM-5MR55
60-69 years, male
3.7
GTEX-X4EP-0011-R1A-SM-3P624
60-69 years, female
2.4
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
21.2
Mouse sample
Sample description
nTPM
Entorhinal cortex nTPM: 21.2
Samples: 4
Max nTPM: 26.3
Min nTPM: 16.6
Sample A
Male
20.7
Sample B
Male
21.2
Sample C
Female
16.6
Sample D
Female
26.3
Hippocampal formation nTPM: 16.1
Samples: 4
Max nTPM: 20.7
Min nTPM: 12.1
Sample A
Male
12.8
Sample B
Male
18.6
Sample C
Female
20.7
Sample D
Female
12.1
HIPPOCAMPAL FORMATION - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.