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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
12.2
nTPM
HPA Brain:
34.1
nTPM
GTEx:
12.2
nTPM
FANTOM5:
52.6
Scaled Tags Per Million
Pig:
26.8
nTPM
Mouse:
11.5
nTPM
MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
34.1
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 30.4
2586
Male, age 75, left hemisphere
45.2
2219
Male, age 76, both hemispheres
34.7
2666
Male, age 74, left hemisphere
31.1
1833
Male, age 53, unknown
30.8
1827
Male, age 72, unknown
28.8
2828
Female, age 72, unknown
27.6
1870
Female, age 42, unknown
27.0
1830
Male, age 51, unknown
26.8
2411
Female, age 72, unknown
26.3
2019
Male, age 18, unknown
25.3
Dorsal raphe nucleus nTPM: 26.9
2750
Male, age 76, both hemispheres
30.2
1828
Male, age 53, unknown
27.5
2047
Male, age 72, unknown
26.8
2016
Female, age 72, unknown
26.3
2298
Female, age 72, unknown
23.4
Inferior colliculus nTPM: 32.0
2849
Male, age 72, unknown
34.4
1890
Male, age 53, unknown
33.7
1848
Female, age 42, unknown
30.0
2097
Female, age 72, unknown
29.8
Median raphe nucleus nTPM: 34.1
2220
Male, age 76, midline
34.1
Periaquaductal grey, anterior nTPM: 30.9
2502
Female, age 75, unknown
34.7
1947
Male, age 18, unknown
30.0
1795
Male, age 51, unknown
28.1
Periaquaductal grey, dorsal nTPM: 28.9
1840
Male, age 53, unknown
33.3
1831
Male, age 72, unknown
27.9
2464
Female, age 72, unknown
27.8
2850
Male, age 76, both hemispheres
26.4
Periaquaductal grey, lateral nTPM: 25.9
2053
Male, age 18, unknown
29.5
2272
Male, age 74, both hemispheres
25.6
2140
Male, age 76, both hemispheres
22.7
Pretectal area nTPM: 29.1
1944
Female, age 72, unknown
36.4
1816
Male, age 51, unknown
35.3
1815
Male, age 53, unknown
30.5
2825
Male, age 18, unknown
30.3
2007
Male, age 72, unknown
28.9
2407
Male, age 75, both hemispheres
28.6
1817
Female, age 42, unknown
28.1
2667
Female, age 75, unknown
27.5
2224
Female, age 72, unknown
26.7
2316
Male, age 76, right hemisphere
25.1
2273
Male, age 74, both hemispheres
23.0
Red nucleus nTPM: 28.4
2588
Male, age 74, left hemisphere
33.6
2584
Male, age 75, left hemisphere
33.2
1904
Male, age 53, unknown
29.2
2503
Female, age 72, unknown
29.1
1954
Female, age 42, unknown
28.5
2227
Male, age 72, unknown
28.4
2769
Male, age 72, unknown
27.8
1865
Male, age 51, unknown
27.0
2823
Male, age 76, right hemisphere
27.0
2725
Female, age 75, unknown
26.3
2785
Male, age 18, unknown
25.8
1821
Female, age 72, unknown
25.2
Substantia nigra nTPM: 31.2
2665
Male, age 74, both hemispheres
35.4
1916
Female, age 42, unknown
34.9
2241
Male, age 72, unknown
34.4
2699
Male, age 18, unknown
32.6
1851
Male, age 51, unknown
32.0
2583
Male, age 75, right hemisphere
31.6
1889
Female, age 72, unknown
30.7
1941
Male, age 53, unknown
27.4
2590
Female, age 75, unknown
27.3
2409
Female, age 72, unknown
25.3
Superior colliculus nTPM: 30.1
2664
Male, age 75, both hemispheres
35.9
2668
Female, age 75, unknown
34.1
2087
Female, age 72, unknown
33.1
2261
Male, age 18, unknown
31.7
1913
Female, age 42, unknown
28.2
2587
Male, age 74, left hemisphere
28.1
1839
Male, age 51, unknown
27.8
1796
Male, age 53, unknown
27.7
1895
Male, age 76, right hemisphere
27.5
1995
Male, age 72, unknown
27.2
Ventral tegmental area nTPM: 29.9
2223
Female, age 72, unknown
32.8
1942
Male, age 51, unknown
32.5
2218
Male, age 76, both hemispheres
32.4
1915
Female, age 42, unknown
28.8
2410
Female, age 72, unknown
26.8
2021
Male, age 53, unknown
26.0
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
12.2
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 12.2
Samples: 139
Max nTPM: 19.3
Min nTPM: 7.9
Std nTPM: 2.2
Median nTPM: 12.2
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
19.3
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
17.9
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
17.8
GTEX-1IKOH-0011-R2a-SM-CMKHO
60-69 years, female
17.2
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
16.9
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
16.3
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
16.2
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
15.6
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
15.6
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
15.5
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
15.4
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
15.4
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
15.3
GTEX-18464-0011-R2a-SM-731AL
50-59 years, male
15.2
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
15.1
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
14.8
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
14.8
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
14.8
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
14.8
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
14.7
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
14.6
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
14.5
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
14.5
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
14.3
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
14.1
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
14.1
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
14.1
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
14.0
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
14.0
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
13.9
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
13.7
GTEX-NL4W-0011-R2a-SM-2I5GV
50-59 years, male
13.7
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
13.7
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
13.7
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
13.6
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
13.6
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
13.5
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
13.5
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
13.4
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
13.4
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
13.4
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
13.3
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
13.3
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
13.2
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
13.2
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
13.2
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
13.0
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
13.0
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
13.0
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
12.9
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
12.9
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
12.9
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
12.9
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
12.9
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
12.8
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
12.8
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
12.7
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
12.7
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
12.6
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
12.6
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
12.5
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
12.5
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
12.4
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
12.4
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
12.4
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
12.3
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
12.3
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
12.3
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
12.3
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
12.2
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
12.2
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
12.2
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
12.2
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
12.1
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
12.1
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
12.1
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
12.0
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
11.9
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
11.9
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
11.9
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
11.8
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
11.8
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
11.7
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
11.7
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
11.6
GTEX-PWO3-0011-R2A-SM-2S1OX
60-69 years, female
11.4
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
11.3
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
11.3
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
11.3
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
11.2
GTEX-N7MS-0011-R2a-SM-2HML6
60-69 years, male
11.2
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
11.2
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
11.1
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
11.0
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
10.9
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
10.9
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
10.8
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
10.8
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
10.8
GTEX-P44G-0011-R2A-SM-2XCD2
30-39 years, male
10.8
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
10.8
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
10.6
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
10.5
GTEX-OXRO-0011-R2A-SM-3NB1W
60-69 years, female
10.4
GTEX-T5JC-0011-R2A-SM-32PLZ
20-29 years, male
10.4
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
10.4
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
10.3
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
10.3
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
10.3
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
10.2
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
10.2
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
10.1
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
10.1
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
10.1
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
10.0
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
9.9
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
9.7
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
9.6
GTEX-N7MT-0011-R2a-SM-2I3GI
60-69 years, female
9.6
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
9.6
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
9.5
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
9.4
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
9.3
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
9.3
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
9.3
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
9.2
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
9.2
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
9.0
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
8.9
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
8.8
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
8.7
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
8.6
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
8.6
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
8.5
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
8.5
GTEX-NPJ8-0011-R2a-SM-2TC6M
40-49 years, male
8.4
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
8.3
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
8.2
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
7.9
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MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.